EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000008644 (Gene tree)
Gene ID: -
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 9244 bases
Position: chrJH001090.1:535662-544905
Accession: 100760326
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000011866	APOBEC_N	PF08210.11	1.8e-30	1	1
ENSCGRP00000011866	APOBEC_C	PF05240.14	2.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000012056	-	690	XM_003509224	ENSCGRP00000011866	229 (aa)	XP_003509272	UPI00022F5AA0

Gene Model

Click here to download ENSCGRG00000008644's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000008644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000008644	Apobec1	61	37.615	ENSCGRG00000005621	Apobec3	60	37.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000008644	Apobec1	100	71.616	ENSG00000111701	APOBEC1	97	71.616	Homo_sapiens
ENSCGRG00000008644	Apobec1	100	67.686	ENSAMEG00000007098	APOBEC1	97	67.686	Ailuropoda_melanoleuca
ENSCGRG00000008644	Apobec1	74	43.275	ENSACAG00000028578	-	93	43.275	Anolis_carolinensis
ENSCGRG00000008644	Apobec1	100	69.869	ENSANAG00000027743	APOBEC1	92	69.869	Aotus_nancymaae
ENSCGRG00000008644	Apobec1	100	67.249	ENSBTAG00000014683	APOBEC1	97	67.249	Bos_taurus
ENSCGRG00000008644	Apobec1	93	70.093	ENSCJAG00000005398	APOBEC1	97	70.093	Callithrix_jacchus
ENSCGRG00000008644	Apobec1	100	69.432	ENSCAFG00000013901	APOBEC1	97	69.432	Canis_familiaris
ENSCGRG00000008644	Apobec1	99	67.826	ENSCAFG00020003511	APOBEC1	96	67.826	Canis_lupus_dingo
ENSCGRG00000008644	Apobec1	100	65.502	ENSCHIG00000011898	APOBEC1	95	65.502	Capra_hircus
ENSCGRG00000008644	Apobec1	62	70.213	ENSTSYG00000029141	APOBEC1	100	70.213	Carlito_syrichta
ENSCGRG00000008644	Apobec1	93	62.150	ENSCAPG00000015882	-	99	62.150	Cavia_aperea
ENSCGRG00000008644	Apobec1	100	60.262	ENSCPOG00000033068	APOBEC1	97	60.262	Cavia_porcellus
ENSCGRG00000008644	Apobec1	100	70.306	ENSCCAG00000022258	APOBEC1	97	70.306	Cebus_capucinus
ENSCGRG00000008644	Apobec1	100	71.179	ENSCATG00000021613	APOBEC1	92	71.179	Cercocebus_atys
ENSCGRG00000008644	Apobec1	100	60.699	ENSCLAG00000014645	APOBEC1	99	60.699	Chinchilla_lanigera
ENSCGRG00000008644	Apobec1	79	71.111	ENSCSAG00000009817	APOBEC1	94	71.111	Chlorocebus_sabaeus
ENSCGRG00000008644	Apobec1	97	41.593	ENSCPBG00000014331	-	90	41.593	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	81	49.198	ENSCPBG00000014335	-	76	49.198	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	76	44.693	ENSCPBG00000017398	-	79	44.693	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	85	47.449	ENSCPBG00000014329	-	54	47.449	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	88	43.137	ENSCPBG00000014328	-	89	43.137	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	93	41.743	ENSCPBG00000014327	-	83	37.674	Chrysemys_picta_bellii
ENSCGRG00000008644	Apobec1	97	71.300	ENSCANG00000038359	APOBEC1	97	71.300	Colobus_angolensis_palliatus
ENSCGRG00000008644	Apobec1	100	100.000	ENSCGRG00001011130	Apobec1	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000008644	Apobec1	100	70.306	ENSDNOG00000010926	APOBEC1	97	70.306	Dasypus_novemcinctus
ENSCGRG00000008644	Apobec1	93	60.748	ENSDORG00000023717	Apobec1	100	60.748	Dipodomys_ordii
ENSCGRG00000008644	Apobec1	100	70.435	ENSETEG00000004867	APOBEC1	97	70.435	Echinops_telfairi
ENSCGRG00000008644	Apobec1	100	72.052	ENSEASG00005015951	APOBEC1	96	72.052	Equus_asinus_asinus
ENSCGRG00000008644	Apobec1	79	72.527	ENSECAG00000017163	APOBEC1	95	72.527	Equus_caballus
ENSCGRG00000008644	Apobec1	89	50.000	ENSEEUG00000007530	-	97	50.000	Erinaceus_europaeus
ENSCGRG00000008644	Apobec1	94	60.185	ENSEEUG00000009112	-	96	60.185	Erinaceus_europaeus
ENSCGRG00000008644	Apobec1	100	71.179	ENSFCAG00000009350	APOBEC1	97	71.179	Felis_catus
ENSCGRG00000008644	Apobec1	62	51.408	ENSFALG00000007257	-	70	51.408	Ficedula_albicollis
ENSCGRG00000008644	Apobec1	88	52.736	ENSFDAG00000018470	APOBEC1	97	52.736	Fukomys_damarensis
ENSCGRG00000008644	Apobec1	94	48.165	ENSGAGG00000011837	-	84	54.783	Gopherus_agassizii
ENSCGRG00000008644	Apobec1	75	47.977	ENSGAGG00000004947	-	86	47.977	Gopherus_agassizii
ENSCGRG00000008644	Apobec1	74	46.199	ENSGAGG00000006624	-	62	46.199	Gopherus_agassizii
ENSCGRG00000008644	Apobec1	74	41.379	ENSGAGG00000021745	-	64	41.379	Gopherus_agassizii
ENSCGRG00000008644	Apobec1	82	44.444	ENSGAGG00000021744	-	74	44.444	Gopherus_agassizii
ENSCGRG00000008644	Apobec1	100	58.079	ENSHGLG00000001495	APOBEC1	97	58.079	Heterocephalus_glaber_female
ENSCGRG00000008644	Apobec1	100	58.079	ENSHGLG00100002187	APOBEC1	97	58.079	Heterocephalus_glaber_male
ENSCGRG00000008644	Apobec1	93	57.477	ENSSTOG00000021971	APOBEC1	99	72.165	Ictidomys_tridecemlineatus
ENSCGRG00000008644	Apobec1	100	70.742	ENSJJAG00000022108	Apobec1	100	70.742	Jaculus_jaculus
ENSCGRG00000008644	Apobec1	94	70.370	ENSLAFG00000030837	APOBEC1	97	70.370	Loxodonta_africana
ENSCGRG00000008644	Apobec1	100	71.179	ENSMFAG00000000277	APOBEC1	97	71.179	Macaca_fascicularis
ENSCGRG00000008644	Apobec1	100	70.742	ENSMNEG00000029670	APOBEC1	97	70.742	Macaca_nemestrina
ENSCGRG00000008644	Apobec1	100	71.179	ENSMLEG00000036301	APOBEC1	97	71.179	Mandrillus_leucophaeus
ENSCGRG00000008644	Apobec1	94	86.574	ENSMAUG00000022167	Apobec1	97	86.574	Mesocricetus_auratus
ENSCGRG00000008644	Apobec1	100	69.432	ENSMICG00000043645	APOBEC1	97	69.432	Microcebus_murinus
ENSCGRG00000008644	Apobec1	100	63.755	ENSMODG00000018004	APOBEC1	97	63.755	Monodelphis_domestica
ENSCGRG00000008644	Apobec1	99	82.895	ENSMUSG00000040613	Apobec1	100	83.471	Mus_musculus
ENSCGRG00000008644	Apobec1	99	82.018	MGP_PahariEiJ_G0022580	-	100	82.645	Mus_pahari
ENSCGRG00000008644	Apobec1	99	82.895	MGP_SPRETEiJ_G0029857	Apobec1	100	83.471	Mus_spretus
ENSCGRG00000008644	Apobec1	100	68.122	ENSMPUG00000017532	APOBEC1	97	68.122	Mustela_putorius_furo
ENSCGRG00000008644	Apobec1	100	72.052	ENSNGAG00000022607	Apobec1	100	72.052	Nannospalax_galili
ENSCGRG00000008644	Apobec1	100	70.742	ENSNLEG00000005342	APOBEC1	97	70.742	Nomascus_leucogenys
ENSCGRG00000008644	Apobec1	100	61.135	ENSMEUG00000013406	APOBEC1	97	61.135	Notamacropus_eugenii
ENSCGRG00000008644	Apobec1	79	58.564	ENSOPRG00000009508	-	100	58.564	Ochotona_princeps
ENSCGRG00000008644	Apobec1	100	68.122	ENSOCUG00000025736	APOBEC1	86	68.122	Oryctolagus_cuniculus
ENSCGRG00000008644	Apobec1	100	69.869	ENSOGAG00000026415	APOBEC1	97	69.869	Otolemur_garnettii
ENSCGRG00000008644	Apobec1	100	65.502	ENSOARG00000002072	APOBEC1	96	65.502	Ovis_aries
ENSCGRG00000008644	Apobec1	100	65.939	ENSPPAG00000027657	APOBEC1	97	65.939	Pan_paniscus
ENSCGRG00000008644	Apobec1	100	71.179	ENSPPRG00000012182	APOBEC1	97	71.179	Panthera_pardus
ENSCGRG00000008644	Apobec1	100	71.179	ENSPTIG00000020280	APOBEC1	97	71.179	Panthera_tigris_altaica
ENSCGRG00000008644	Apobec1	100	71.179	ENSPTRG00000004614	APOBEC1	97	71.179	Pan_troglodytes
ENSCGRG00000008644	Apobec1	100	71.616	ENSPANG00000021027	APOBEC1	97	71.616	Papio_anubis
ENSCGRG00000008644	Apobec1	91	39.815	ENSPSIG00000012568	-	94	39.815	Pelodiscus_sinensis
ENSCGRG00000008644	Apobec1	55	50.000	ENSPSIG00000012791	-	71	50.000	Pelodiscus_sinensis
ENSCGRG00000008644	Apobec1	100	83.843	ENSPEMG00000023841	Apobec1	100	83.843	Peromyscus_maniculatus_bairdii
ENSCGRG00000008644	Apobec1	100	64.629	ENSPCIG00000023973	APOBEC1	97	64.629	Phascolarctos_cinereus
ENSCGRG00000008644	Apobec1	100	70.742	ENSPPYG00000004228	APOBEC1	92	70.742	Pongo_abelii
ENSCGRG00000008644	Apobec1	82	68.449	ENSPCAG00000008733	APOBEC1	100	68.449	Procavia_capensis
ENSCGRG00000008644	Apobec1	94	69.767	ENSPCOG00000013957	APOBEC1	95	69.767	Propithecus_coquereli
ENSCGRG00000008644	Apobec1	100	57.205	ENSPVAG00000010709	APOBEC1	97	57.205	Pteropus_vampyrus
ENSCGRG00000008644	Apobec1	99	82.018	ENSRNOG00000015411	Apobec1	99	82.018	Rattus_norvegicus
ENSCGRG00000008644	Apobec1	100	71.616	ENSRBIG00000031161	APOBEC1	97	71.616	Rhinopithecus_bieti
ENSCGRG00000008644	Apobec1	100	71.179	ENSRROG00000033576	APOBEC1	97	71.179	Rhinopithecus_roxellana
ENSCGRG00000008644	Apobec1	76	69.364	ENSSBOG00000030587	APOBEC1	98	69.364	Saimiri_boliviensis_boliviensis
ENSCGRG00000008644	Apobec1	96	63.927	ENSSHAG00000008925	APOBEC1	96	63.927	Sarcophilus_harrisii
ENSCGRG00000008644	Apobec1	75	62.209	ENSSARG00000000032	-	100	62.209	Sorex_araneus
ENSCGRG00000008644	Apobec1	56	67.442	ENSSARG00000011972	-	98	67.442	Sorex_araneus
ENSCGRG00000008644	Apobec1	89	45.192	ENSSPUG00000009044	-	79	45.192	Sphenodon_punctatus
ENSCGRG00000008644	Apobec1	100	70.742	ENSSSCG00000000668	APOBEC1	97	70.742	Sus_scrofa
ENSCGRG00000008644	Apobec1	63	52.740	ENSTGUG00000013118	-	100	52.740	Taeniopygia_guttata
ENSCGRG00000008644	Apobec1	93	67.290	ENSTBEG00000010043	APOBEC1	91	67.290	Tupaia_belangeri
ENSCGRG00000008644	Apobec1	82	66.845	ENSTTRG00000014015	APOBEC1	100	66.845	Tursiops_truncatus
ENSCGRG00000008644	Apobec1	100	67.249	ENSUAMG00000011636	APOBEC1	94	67.249	Ursus_americanus
ENSCGRG00000008644	Apobec1	100	67.249	ENSUMAG00000016552	APOBEC1	94	67.249	Ursus_maritimus
ENSCGRG00000008644	Apobec1	100	68.122	ENSVPAG00000001343	APOBEC1	97	68.122	Vicugna_pacos
ENSCGRG00000008644	Apobec1	100	69.432	ENSVVUG00000010522	APOBEC1	97	69.432	Vulpes_vulpes