EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000009398 (Gene tree)
Gene ID: -
Gene Symbol: Lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 6081 bases
Position: chrJH000137.1:965144-971224
Accession: 100769464
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000012911	LSM	PF01423.22	8e-17	1	1
ENSCGRP00000012910	LSM	PF01423.22	8.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000013113	-	2197	-	ENSCGRP00000012909	103 (aa)	-	-
ENSCGRT00000013114	-	426	-	ENSCGRP00000012910	141 (aa)	-	-
ENSCGRT00000013115	-	1620	XM_007637814	ENSCGRP00000012911	137 (aa)	XP_007636004	-
ENSCGRT00000013116	-	315	-	ENSCGRP00000012912	104 (aa)	-	-

Gene Model

Click here to download ENSCGRG00000009398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000009398's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000009398	Lsm4	67	31.250	ENSCGRG00000004280	Snrpd3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000009398	Lsm4	100	95.652	ENSG00000130520	LSM4	100	95.200	Homo_sapiens
ENSCGRG00000009398	Lsm4	71	93.878	ENSAPOG00000005643	lsm4	58	95.402	Acanthochromis_polyacanthus
ENSCGRG00000009398	Lsm4	100	95.652	ENSAMEG00000011162	LSM4	95	95.652	Ailuropoda_melanoleuca
ENSCGRG00000009398	Lsm4	99	74.648	ENSAOCG00000006414	lsm4	59	95.402	Amphiprion_ocellaris
ENSCGRG00000009398	Lsm4	71	93.878	ENSAPEG00000006238	lsm4	58	95.402	Amphiprion_percula
ENSCGRG00000009398	Lsm4	71	93.878	ENSATEG00000016559	lsm4	57	95.402	Anabas_testudineus
ENSCGRG00000009398	Lsm4	100	95.652	ENSANAG00000034659	LSM4	100	95.200	Aotus_nancymaae
ENSCGRG00000009398	Lsm4	79	81.301	ENSACLG00000022738	lsm4	59	95.402	Astatotilapia_calliptera
ENSCGRG00000009398	Lsm4	96	81.159	ENSAMXG00000016932	lsm4	61	95.402	Astyanax_mexicanus
ENSCGRG00000009398	Lsm4	100	95.652	ENSBTAG00000008578	LSM4	99	95.652	Bos_taurus
ENSCGRG00000009398	Lsm4	60	74.390	WBGene00003078	lsm-4	67	74.390	Caenorhabditis_elegans
ENSCGRG00000009398	Lsm4	100	95.652	ENSCJAG00000014171	LSM4	100	95.200	Callithrix_jacchus
ENSCGRG00000009398	Lsm4	99	95.620	ENSCAFG00000014900	LSM4	90	95.620	Canis_familiaris
ENSCGRG00000009398	Lsm4	100	95.652	ENSCAFG00020012137	LSM4	99	95.652	Canis_lupus_dingo
ENSCGRG00000009398	Lsm4	100	95.652	ENSCHIG00000010928	LSM4	91	95.652	Capra_hircus
ENSCGRG00000009398	Lsm4	100	96.377	ENSTSYG00000030906	LSM4	100	96.000	Carlito_syrichta
ENSCGRG00000009398	Lsm4	100	94.928	ENSCAPG00000014140	LSM4	99	94.928	Cavia_aperea
ENSCGRG00000009398	Lsm4	100	94.928	ENSCPOG00000024117	LSM4	99	94.928	Cavia_porcellus
ENSCGRG00000009398	Lsm4	100	95.652	ENSCCAG00000036308	LSM4	100	95.200	Cebus_capucinus
ENSCGRG00000009398	Lsm4	100	95.652	ENSCATG00000029311	LSM4	100	95.200	Cercocebus_atys
ENSCGRG00000009398	Lsm4	100	92.029	ENSCLAG00000010828	LSM4	99	92.029	Chinchilla_lanigera
ENSCGRG00000009398	Lsm4	100	95.652	ENSCSAG00000005370	LSM4	99	95.652	Chlorocebus_sabaeus
ENSCGRG00000009398	Lsm4	100	75.912	ENSCPBG00000012925	LSM4	99	75.912	Chrysemys_picta_bellii
ENSCGRG00000009398	Lsm4	60	92.683	ENSCING00000007519	-	69	90.805	Ciona_intestinalis
ENSCGRG00000009398	Lsm4	60	93.902	ENSCSAVG00000008596	-	70	91.954	Ciona_savignyi
ENSCGRG00000009398	Lsm4	100	95.652	ENSCANG00000043686	LSM4	100	95.200	Colobus_angolensis_palliatus
ENSCGRG00000009398	Lsm4	100	100.000	ENSCGRG00001014436	Lsm4	100	99.275	Cricetulus_griseus_chok1gshd
ENSCGRG00000009398	Lsm4	69	93.750	ENSCSEG00000016127	lsm4	61	95.402	Cynoglossus_semilaevis
ENSCGRG00000009398	Lsm4	99	75.182	ENSCVAG00000010601	lsm4	61	95.402	Cyprinodon_variegatus
ENSCGRG00000009398	Lsm4	88	72.358	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSCGRG00000009398	Lsm4	97	76.429	ENSDARG00000023852	lsm4	61	95.402	Danio_rerio
ENSCGRG00000009398	Lsm4	100	94.928	ENSDORG00000024225	Lsm4	99	94.928	Dipodomys_ordii
ENSCGRG00000009398	Lsm4	64	87.640	FBgn0032240	CG17768	56	88.506	Drosophila_melanogaster
ENSCGRG00000009398	Lsm4	90	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
ENSCGRG00000009398	Lsm4	100	95.652	ENSECAG00000010141	LSM4	56	95.652	Equus_caballus
ENSCGRG00000009398	Lsm4	96	82.090	ENSELUG00000012821	lsm4	66	95.402	Esox_lucius
ENSCGRG00000009398	Lsm4	100	95.652	ENSFCAG00000040580	LSM4	100	95.200	Felis_catus
ENSCGRG00000009398	Lsm4	100	75.182	ENSFALG00000009478	LSM4	99	75.182	Ficedula_albicollis
ENSCGRG00000009398	Lsm4	100	92.754	ENSFDAG00000010124	LSM4	100	92.754	Fukomys_damarensis
ENSCGRG00000009398	Lsm4	69	93.750	ENSGMOG00000007729	lsm4	59	95.402	Gadus_morhua
ENSCGRG00000009398	Lsm4	100	75.182	ENSGALG00000003385	LSM4	99	75.182	Gallus_gallus
ENSCGRG00000009398	Lsm4	79	81.301	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSCGRG00000009398	Lsm4	68	95.745	ENSGACG00000008140	lsm4	58	95.402	Gasterosteus_aculeatus
ENSCGRG00000009398	Lsm4	100	75.912	ENSGAGG00000017812	LSM4	99	75.912	Gopherus_agassizii
ENSCGRG00000009398	Lsm4	100	95.652	ENSGGOG00000012914	-	100	95.200	Gorilla_gorilla
ENSCGRG00000009398	Lsm4	100	92.754	ENSHGLG00000006568	LSM4	99	92.754	Heterocephalus_glaber_female
ENSCGRG00000009398	Lsm4	66	96.703	ENSHGLG00100007894	LSM4	98	96.703	Heterocephalus_glaber_male
ENSCGRG00000009398	Lsm4	99	75.735	ENSHCOG00000008819	lsm4	61	95.402	Hippocampus_comes
ENSCGRG00000009398	Lsm4	99	78.102	ENSIPUG00000005368	Lsm4	61	95.402	Ictalurus_punctatus
ENSCGRG00000009398	Lsm4	100	95.652	ENSSTOG00000016494	LSM4	99	95.652	Ictidomys_tridecemlineatus
ENSCGRG00000009398	Lsm4	100	97.101	ENSJJAG00000017420	Lsm4	100	96.403	Jaculus_jaculus
ENSCGRG00000009398	Lsm4	61	95.181	ENSKMAG00000005073	lsm4	60	94.253	Kryptolebias_marmoratus
ENSCGRG00000009398	Lsm4	71	93.878	ENSLBEG00000027930	lsm4	58	95.402	Labrus_bergylta
ENSCGRG00000009398	Lsm4	99	80.882	ENSLACG00000015861	LSM4	97	80.882	Latimeria_chalumnae
ENSCGRG00000009398	Lsm4	93	82.812	ENSLOCG00000002025	lsm4	62	95.402	Lepisosteus_oculatus
ENSCGRG00000009398	Lsm4	100	94.928	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
ENSCGRG00000009398	Lsm4	100	95.652	ENSMFAG00000031194	LSM4	100	95.200	Macaca_fascicularis
ENSCGRG00000009398	Lsm4	100	95.652	ENSMMUG00000004405	LSM4	100	95.200	Macaca_mulatta
ENSCGRG00000009398	Lsm4	100	95.652	ENSMNEG00000042899	LSM4	100	95.200	Macaca_nemestrina
ENSCGRG00000009398	Lsm4	100	95.652	ENSMLEG00000027948	LSM4	100	95.200	Mandrillus_leucophaeus
ENSCGRG00000009398	Lsm4	99	77.372	ENSMAMG00000006190	lsm4	61	95.402	Mastacembelus_armatus
ENSCGRG00000009398	Lsm4	96	70.199	ENSMZEG00005016420	lsm4	60	95.402	Maylandia_zebra
ENSCGRG00000009398	Lsm4	100	80.576	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSCGRG00000009398	Lsm4	100	94.928	ENSMICG00000000222	LSM4	100	94.400	Microcebus_murinus
ENSCGRG00000009398	Lsm4	100	99.270	ENSMOCG00000020861	Lsm4	100	98.551	Microtus_ochrogaster
ENSCGRG00000009398	Lsm4	90	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSCGRG00000009398	Lsm4	99	73.723	ENSMALG00000018159	lsm4	61	94.253	Monopterus_albus
ENSCGRG00000009398	Lsm4	100	99.270	MGP_CAROLIEiJ_G0031158	Lsm4	100	98.551	Mus_caroli
ENSCGRG00000009398	Lsm4	100	99.270	ENSMUSG00000031848	Lsm4	100	98.551	Mus_musculus
ENSCGRG00000009398	Lsm4	100	99.270	MGP_PahariEiJ_G0021623	Lsm4	100	98.551	Mus_pahari
ENSCGRG00000009398	Lsm4	100	99.270	MGP_SPRETEiJ_G0032276	Lsm4	100	98.551	Mus_spretus
ENSCGRG00000009398	Lsm4	100	95.652	ENSMPUG00000015589	LSM4	99	95.652	Mustela_putorius_furo
ENSCGRG00000009398	Lsm4	100	95.652	ENSMLUG00000004010	LSM4	99	95.652	Myotis_lucifugus
ENSCGRG00000009398	Lsm4	100	98.551	ENSNGAG00000008644	Lsm4	100	98.496	Nannospalax_galili
ENSCGRG00000009398	Lsm4	71	93.878	ENSNBRG00000022150	lsm4	54	95.402	Neolamprologus_brichardi
ENSCGRG00000009398	Lsm4	90	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSCGRG00000009398	Lsm4	90	89.516	ENSOPRG00000005575	LSM4	100	79.839	Ochotona_princeps
ENSCGRG00000009398	Lsm4	100	92.754	ENSODEG00000020549	-	99	92.754	Octodon_degus
ENSCGRG00000009398	Lsm4	100	83.212	ENSODEG00000004519	-	99	72.993	Octodon_degus
ENSCGRG00000009398	Lsm4	79	81.301	ENSONIG00000012724	lsm4	59	95.402	Oreochromis_niloticus
ENSCGRG00000009398	Lsm4	63	90.110	ENSOANG00000007434	LSM4	78	90.110	Ornithorhynchus_anatinus
ENSCGRG00000009398	Lsm4	100	81.159	ENSORLG00000008391	lsm4	60	94.253	Oryzias_latipes
ENSCGRG00000009398	Lsm4	100	81.159	ENSORLG00020014829	lsm4	60	94.253	Oryzias_latipes_hni
ENSCGRG00000009398	Lsm4	98	81.295	ENSORLG00015010205	lsm4	60	94.253	Oryzias_latipes_hsok
ENSCGRG00000009398	Lsm4	100	80.435	ENSOMEG00000003606	lsm4	60	94.253	Oryzias_melastigma
ENSCGRG00000009398	Lsm4	72	94.949	ENSOGAG00000027992	LSM4	60	96.552	Otolemur_garnettii
ENSCGRG00000009398	Lsm4	63	96.552	ENSOARG00000012553	LSM4	60	96.552	Ovis_aries
ENSCGRG00000009398	Lsm4	100	95.652	ENSPPAG00000044045	-	100	95.200	Pan_paniscus
ENSCGRG00000009398	Lsm4	100	95.652	ENSPPRG00000018264	LSM4	100	95.200	Panthera_pardus
ENSCGRG00000009398	Lsm4	100	95.652	ENSPTIG00000006306	LSM4	100	95.652	Panthera_tigris_altaica
ENSCGRG00000009398	Lsm4	100	95.652	ENSPTRG00000031470	LSM4	100	95.200	Pan_troglodytes
ENSCGRG00000009398	Lsm4	100	95.652	ENSPANG00000014399	LSM4	100	95.200	Papio_anubis
ENSCGRG00000009398	Lsm4	99	80.147	ENSPKIG00000006154	lsm4	62	95.402	Paramormyrops_kingsleyae
ENSCGRG00000009398	Lsm4	100	75.182	ENSPSIG00000012358	LSM4	100	75.182	Pelodiscus_sinensis
ENSCGRG00000009398	Lsm4	100	99.270	ENSPEMG00000001358	Lsm4	100	98.551	Peromyscus_maniculatus_bairdii
ENSCGRG00000009398	Lsm4	99	78.417	ENSPLAG00000016267	lsm4	61	95.402	Poecilia_latipinna
ENSCGRG00000009398	Lsm4	99	82.734	ENSPMEG00000016378	lsm4	63	95.402	Poecilia_mexicana
ENSCGRG00000009398	Lsm4	100	95.652	ENSPPYG00000009736	LSM4	99	95.652	Pongo_abelii
ENSCGRG00000009398	Lsm4	90	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
ENSCGRG00000009398	Lsm4	100	94.928	ENSPCOG00000019837	LSM4	100	94.400	Propithecus_coquereli
ENSCGRG00000009398	Lsm4	100	95.652	ENSPVAG00000015383	LSM4	99	95.652	Pteropus_vampyrus
ENSCGRG00000009398	Lsm4	96	70.199	ENSPNYG00000016794	lsm4	60	95.402	Pundamilia_nyererei
ENSCGRG00000009398	Lsm4	96	80.597	ENSPNAG00000016598	lsm4	65	95.402	Pygocentrus_nattereri
ENSCGRG00000009398	Lsm4	100	99.270	ENSRNOG00000019572	Lsm4	100	98.551	Rattus_norvegicus
ENSCGRG00000009398	Lsm4	100	95.652	ENSRBIG00000024717	LSM4	100	95.200	Rhinopithecus_bieti
ENSCGRG00000009398	Lsm4	100	95.652	ENSRROG00000045706	LSM4	100	95.200	Rhinopithecus_roxellana
ENSCGRG00000009398	Lsm4	91	95.200	ENSSBOG00000022455	LSM4	100	95.200	Saimiri_boliviensis_boliviensis
ENSCGRG00000009398	Lsm4	100	94.203	ENSSHAG00000011559	LSM4	99	94.203	Sarcophilus_harrisii
ENSCGRG00000009398	Lsm4	99	78.676	ENSSFOG00015021067	lsm4	62	95.402	Scleropages_formosus
ENSCGRG00000009398	Lsm4	71	92.857	ENSSMAG00000021020	lsm4	58	95.402	Scophthalmus_maximus
ENSCGRG00000009398	Lsm4	71	93.878	ENSSDUG00000009588	lsm4	52	95.402	Seriola_dumerili
ENSCGRG00000009398	Lsm4	71	93.878	ENSSLDG00000006827	lsm4	52	95.402	Seriola_lalandi_dorsalis
ENSCGRG00000009398	Lsm4	63	95.402	ENSSPUG00000010166	LSM4	56	95.402	Sphenodon_punctatus
ENSCGRG00000009398	Lsm4	71	93.878	ENSSPAG00000011615	lsm4	58	95.402	Stegastes_partitus
ENSCGRG00000009398	Lsm4	100	95.652	ENSSSCG00000034314	LSM4	99	95.652	Sus_scrofa
ENSCGRG00000009398	Lsm4	79	79.675	ENSTRUG00000021737	lsm4	61	94.253	Takifugu_rubripes
ENSCGRG00000009398	Lsm4	99	79.137	ENSTNIG00000010191	lsm4	60	95.402	Tetraodon_nigroviridis
ENSCGRG00000009398	Lsm4	100	95.652	ENSUAMG00000000665	LSM4	99	95.652	Ursus_americanus
ENSCGRG00000009398	Lsm4	100	95.652	ENSUMAG00000009013	LSM4	99	95.652	Ursus_maritimus
ENSCGRG00000009398	Lsm4	100	95.652	ENSVVUG00000008136	LSM4	71	95.652	Vulpes_vulpes
ENSCGRG00000009398	Lsm4	100	89.855	ENSXETG00000024933	lsm4	99	74.453	Xenopus_tropicalis