EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000011724 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 55983 bases
Position: chrJH000296.1:85110-141092
Accession: 100751937
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000016161	RRM_1	PF00076.22	2.6e-32	1	2
ENSCGRP00000016161	RRM_1	PF00076.22	2.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000016399	-	3687	XM_003502033	ENSCGRP00000016161	522 (aa)	XP_003502081	G3HDG6

Gene Model

Click here to download ENSCGRG00000011724's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000011724's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000011724	Pspc1	89	60.173	ENSCGRG00000004508	Nono	89	68.097
ENSCGRG00000011724	Pspc1	88	58.584	ENSCGRG00000010128	Sfpq	80	68.306

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000011724	Pspc1	100	97.132	ENSG00000121390	PSPC1	100	97.132	Homo_sapiens
ENSCGRG00000011724	Pspc1	88	70.650	ENSAPOG00000015946	pspc1	88	68.776	Acanthochromis_polyacanthus
ENSCGRG00000011724	Pspc1	100	96.941	ENSAMEG00000017420	PSPC1	100	96.941	Ailuropoda_melanoleuca
ENSCGRG00000011724	Pspc1	91	60.563	ENSACIG00000018695	pspc1	92	58.149	Amphilophus_citrinellus
ENSCGRG00000011724	Pspc1	88	69.602	ENSAOCG00000005279	pspc1	85	69.584	Amphiprion_ocellaris
ENSCGRG00000011724	Pspc1	88	70.726	ENSAPEG00000015927	pspc1	85	69.584	Amphiprion_percula
ENSCGRG00000011724	Pspc1	88	58.174	ENSATEG00000004878	pspc1	96	55.684	Anabas_testudineus
ENSCGRG00000011724	Pspc1	77	93.069	ENSAPLG00000006246	PSPC1	100	93.069	Anas_platyrhynchos
ENSCGRG00000011724	Pspc1	89	60.730	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSCGRG00000011724	Pspc1	99	85.143	ENSACAG00000002093	PSPC1	99	84.615	Anolis_carolinensis
ENSCGRG00000011724	Pspc1	89	52.854	ENSACAG00000013307	-	56	65.027	Anolis_carolinensis
ENSCGRG00000011724	Pspc1	100	97.514	ENSANAG00000000059	PSPC1	100	97.514	Aotus_nancymaae
ENSCGRG00000011724	Pspc1	99	57.037	ENSACLG00000027220	pspc1	100	53.959	Astatotilapia_calliptera
ENSCGRG00000011724	Pspc1	88	68.958	ENSAMXG00000036881	pspc1	100	64.630	Astyanax_mexicanus
ENSCGRG00000011724	Pspc1	100	95.029	ENSBTAG00000003934	PSPC1	100	95.029	Bos_taurus
ENSCGRG00000011724	Pspc1	100	97.514	ENSCJAG00000004554	PSPC1	100	97.514	Callithrix_jacchus
ENSCGRG00000011724	Pspc1	100	97.132	ENSCAFG00020002009	PSPC1	100	97.132	Canis_lupus_dingo
ENSCGRG00000011724	Pspc1	100	95.029	ENSCHIG00000016708	PSPC1	100	95.029	Capra_hircus
ENSCGRG00000011724	Pspc1	80	87.678	ENSTSYG00000032882	PSPC1	93	85.036	Carlito_syrichta
ENSCGRG00000011724	Pspc1	100	95.985	ENSCPOG00000000395	PSPC1	100	95.985	Cavia_porcellus
ENSCGRG00000011724	Pspc1	100	97.514	ENSCCAG00000033498	PSPC1	100	97.514	Cebus_capucinus
ENSCGRG00000011724	Pspc1	100	96.941	ENSCATG00000036434	PSPC1	100	96.941	Cercocebus_atys
ENSCGRG00000011724	Pspc1	88	87.473	ENSCLAG00000005241	PSPC1	99	87.473	Chinchilla_lanigera
ENSCGRG00000011724	Pspc1	100	90.249	ENSCHOG00000008913	PSPC1	100	90.057	Choloepus_hoffmanni
ENSCGRG00000011724	Pspc1	89	93.576	ENSCPBG00000020859	PSPC1	99	86.742	Chrysemys_picta_bellii
ENSCGRG00000011724	Pspc1	59	58.766	ENSCSAVG00000003533	-	58	58.306	Ciona_savignyi
ENSCGRG00000011724	Pspc1	78	84.938	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCGRG00000011724	Pspc1	100	100.000	ENSCGRG00001018368	Pspc1	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000011724	Pspc1	87	66.307	ENSCVAG00000007679	-	92	63.804	Cyprinodon_variegatus
ENSCGRG00000011724	Pspc1	99	67.103	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSCGRG00000011724	Pspc1	100	95.602	ENSDNOG00000011078	PSPC1	100	95.793	Dasypus_novemcinctus
ENSCGRG00000011724	Pspc1	100	94.455	ENSDORG00000016050	Pspc1	100	94.455	Dipodomys_ordii
ENSCGRG00000011724	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCGRG00000011724	Pspc1	88	59.504	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSCGRG00000011724	Pspc1	58	46.037	ENSEBUG00000010133	pspc1	78	48.485	Eptatretus_burgeri
ENSCGRG00000011724	Pspc1	100	97.126	ENSEASG00005000119	PSPC1	100	97.126	Equus_asinus_asinus
ENSCGRG00000011724	Pspc1	100	97.126	ENSECAG00000017286	PSPC1	100	97.126	Equus_caballus
ENSCGRG00000011724	Pspc1	73	95.082	ENSEEUG00000011288	-	88	84.112	Erinaceus_europaeus
ENSCGRG00000011724	Pspc1	99	65.683	ENSELUG00000003746	pspc1	94	72.308	Esox_lucius
ENSCGRG00000011724	Pspc1	100	97.132	ENSFCAG00000027841	PSPC1	100	97.132	Felis_catus
ENSCGRG00000011724	Pspc1	99	87.572	ENSFALG00000008750	PSPC1	99	86.704	Ficedula_albicollis
ENSCGRG00000011724	Pspc1	100	94.061	ENSFDAG00000002617	PSPC1	100	94.061	Fukomys_damarensis
ENSCGRG00000011724	Pspc1	88	66.379	ENSGMOG00000015074	pspc1	86	65.806	Gadus_morhua
ENSCGRG00000011724	Pspc1	99	86.957	ENSGALG00000017142	PSPC1	99	87.194	Gallus_gallus
ENSCGRG00000011724	Pspc1	66	75.072	ENSGAFG00000006327	pspc1	72	75.072	Gambusia_affinis
ENSCGRG00000011724	Pspc1	88	65.733	ENSGACG00000014901	pspc1	93	72.836	Gasterosteus_aculeatus
ENSCGRG00000011724	Pspc1	92	58.848	ENSGAGG00000017325	-	58	66.580	Gopherus_agassizii
ENSCGRG00000011724	Pspc1	89	93.576	ENSGAGG00000019164	PSPC1	99	87.259	Gopherus_agassizii
ENSCGRG00000011724	Pspc1	100	96.941	ENSGGOG00000003414	PSPC1	100	96.941	Gorilla_gorilla
ENSCGRG00000011724	Pspc1	99	64.193	ENSHBUG00000001139	pspc1	100	63.265	Haplochromis_burtoni
ENSCGRG00000011724	Pspc1	100	95.602	ENSHGLG00000018811	PSPC1	100	95.602	Heterocephalus_glaber_female
ENSCGRG00000011724	Pspc1	67	91.977	ENSHGLG00100007962	PSPC1	100	91.977	Heterocephalus_glaber_male
ENSCGRG00000011724	Pspc1	75	67.568	ENSHCOG00000013251	pspc1	93	66.588	Hippocampus_comes
ENSCGRG00000011724	Pspc1	99	68.148	ENSIPUG00000013192	pspc1	91	73.140	Ictalurus_punctatus
ENSCGRG00000011724	Pspc1	100	97.323	ENSSTOG00000026833	PSPC1	100	97.323	Ictidomys_tridecemlineatus
ENSCGRG00000011724	Pspc1	100	97.126	ENSJJAG00000018334	Pspc1	100	97.126	Jaculus_jaculus
ENSCGRG00000011724	Pspc1	88	55.508	ENSKMAG00000013525	-	96	50.382	Kryptolebias_marmoratus
ENSCGRG00000011724	Pspc1	92	65.415	ENSLBEG00000004474	pspc1	80	70.942	Labrus_bergylta
ENSCGRG00000011724	Pspc1	99	77.052	ENSLACG00000010762	PSPC1	99	77.444	Latimeria_chalumnae
ENSCGRG00000011724	Pspc1	88	84.599	ENSLOCG00000010832	pspc1	99	77.543	Lepisosteus_oculatus
ENSCGRG00000011724	Pspc1	100	95.785	ENSLAFG00000010968	PSPC1	100	95.785	Loxodonta_africana
ENSCGRG00000011724	Pspc1	100	96.750	ENSMFAG00000032728	PSPC1	100	96.750	Macaca_fascicularis
ENSCGRG00000011724	Pspc1	100	96.750	ENSMMUG00000020262	PSPC1	100	96.750	Macaca_mulatta
ENSCGRG00000011724	Pspc1	100	96.750	ENSMNEG00000027401	PSPC1	100	96.750	Macaca_nemestrina
ENSCGRG00000011724	Pspc1	100	98.496	ENSMLEG00000039043	PSPC1	100	98.496	Mandrillus_leucophaeus
ENSCGRG00000011724	Pspc1	88	67.423	ENSMAMG00000004333	pspc1	87	62.260	Mastacembelus_armatus
ENSCGRG00000011724	Pspc1	99	57.037	ENSMZEG00005005726	pspc1	100	53.959	Maylandia_zebra
ENSCGRG00000011724	Pspc1	78	92.857	ENSMGAG00000015134	PSPC1	100	92.857	Meleagris_gallopavo
ENSCGRG00000011724	Pspc1	88	94.360	ENSMAUG00000021067	Pspc1	99	94.360	Mesocricetus_auratus
ENSCGRG00000011724	Pspc1	100	96.743	ENSMICG00000013970	PSPC1	100	96.743	Microcebus_murinus
ENSCGRG00000011724	Pspc1	100	98.659	ENSMOCG00000006060	Pspc1	100	98.659	Microtus_ochrogaster
ENSCGRG00000011724	Pspc1	88	44.332	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSCGRG00000011724	Pspc1	93	95.670	ENSMODG00000008029	PSPC1	78	95.670	Monodelphis_domestica
ENSCGRG00000011724	Pspc1	91	67.073	ENSMALG00000008914	pspc1	93	65.580	Monopterus_albus
ENSCGRG00000011724	Pspc1	100	98.662	MGP_CAROLIEiJ_G0019341	Pspc1	100	98.662	Mus_caroli
ENSCGRG00000011724	Pspc1	100	98.853	ENSMUSG00000021938	Pspc1	100	98.853	Mus_musculus
ENSCGRG00000011724	Pspc1	100	98.662	MGP_PahariEiJ_G0030359	Pspc1	100	98.662	Mus_pahari
ENSCGRG00000011724	Pspc1	100	98.853	MGP_SPRETEiJ_G0020232	Pspc1	100	98.853	Mus_spretus
ENSCGRG00000011724	Pspc1	100	96.750	ENSMPUG00000013347	PSPC1	100	96.750	Mustela_putorius_furo
ENSCGRG00000011724	Pspc1	100	95.817	ENSMLUG00000017663	PSPC1	100	95.817	Myotis_lucifugus
ENSCGRG00000011724	Pspc1	100	97.893	ENSNGAG00000011271	Pspc1	100	97.893	Nannospalax_galili
ENSCGRG00000011724	Pspc1	74	65.228	ENSNBRG00000014059	pspc1	92	62.312	Neolamprologus_brichardi
ENSCGRG00000011724	Pspc1	100	97.132	ENSNLEG00000001294	PSPC1	100	97.132	Nomascus_leucogenys
ENSCGRG00000011724	Pspc1	84	94.922	ENSMEUG00000000476	PSPC1	84	94.922	Notamacropus_eugenii
ENSCGRG00000011724	Pspc1	100	84.321	ENSODEG00000007817	-	100	80.907	Octodon_degus
ENSCGRG00000011724	Pspc1	100	84.160	ENSODEG00000019012	-	100	85.444	Octodon_degus
ENSCGRG00000011724	Pspc1	99	64.259	ENSONIG00000012010	pspc1	99	62.752	Oreochromis_niloticus
ENSCGRG00000011724	Pspc1	76	96.992	ENSOANG00000009017	-	100	96.992	Ornithorhynchus_anatinus
ENSCGRG00000011724	Pspc1	99	65.966	ENSOANG00000011381	-	99	63.862	Ornithorhynchus_anatinus
ENSCGRG00000011724	Pspc1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSCGRG00000011724	Pspc1	88	70.000	ENSORLG00000004232	-	92	62.745	Oryzias_latipes
ENSCGRG00000011724	Pspc1	88	69.574	ENSORLG00020000578	PSPC1	92	63.889	Oryzias_latipes_hni
ENSCGRG00000011724	Pspc1	88	70.426	ENSORLG00015017480	pspc1	92	62.941	Oryzias_latipes_hsok
ENSCGRG00000011724	Pspc1	100	97.514	ENSOGAG00000012643	PSPC1	100	97.514	Otolemur_garnettii
ENSCGRG00000011724	Pspc1	100	90.840	ENSOARG00000014163	PSPC1	100	90.840	Ovis_aries
ENSCGRG00000011724	Pspc1	89	92.043	ENSPPAG00000009836	PSPC1	98	95.677	Pan_paniscus
ENSCGRG00000011724	Pspc1	100	97.132	ENSPPRG00000008833	PSPC1	100	97.132	Panthera_pardus
ENSCGRG00000011724	Pspc1	100	82.375	ENSPTIG00000016917	PSPC1	100	82.375	Panthera_tigris_altaica
ENSCGRG00000011724	Pspc1	98	95.720	ENSPTRG00000005677	PSPC1	99	97.119	Pan_troglodytes
ENSCGRG00000011724	Pspc1	100	96.941	ENSPANG00000001992	PSPC1	100	96.941	Papio_anubis
ENSCGRG00000011724	Pspc1	90	74.741	ENSPKIG00000003578	pspc1	90	72.464	Paramormyrops_kingsleyae
ENSCGRG00000011724	Pspc1	99	86.226	ENSPSIG00000005168	PSPC1	99	86.604	Pelodiscus_sinensis
ENSCGRG00000011724	Pspc1	59	71.474	ENSPMGG00000015135	pspc1	85	71.383	Periophthalmus_magnuspinnatus
ENSCGRG00000011724	Pspc1	100	99.425	ENSPEMG00000015214	Pspc1	100	99.425	Peromyscus_maniculatus_bairdii
ENSCGRG00000011724	Pspc1	99	95.977	ENSPCIG00000017680	PSPC1	100	95.977	Phascolarctos_cinereus
ENSCGRG00000011724	Pspc1	92	67.409	ENSPFOG00000003362	pspc1	93	66.329	Poecilia_formosa
ENSCGRG00000011724	Pspc1	92	67.409	ENSPLAG00000011540	pspc1	92	66.329	Poecilia_latipinna
ENSCGRG00000011724	Pspc1	70	64.499	ENSPLAG00000004407	-	53	60.105	Poecilia_latipinna
ENSCGRG00000011724	Pspc1	92	67.004	ENSPMEG00000008322	pspc1	92	65.923	Poecilia_mexicana
ENSCGRG00000011724	Pspc1	70	64.499	ENSPMEG00000001025	-	53	60.105	Poecilia_mexicana
ENSCGRG00000011724	Pspc1	92	67.004	ENSPREG00000007786	pspc1	92	65.517	Poecilia_reticulata
ENSCGRG00000011724	Pspc1	100	96.743	ENSPPYG00000005186	PSPC1	100	96.743	Pongo_abelii
ENSCGRG00000011724	Pspc1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCGRG00000011724	Pspc1	100	93.117	ENSPCOG00000014364	PSPC1	100	93.117	Propithecus_coquereli
ENSCGRG00000011724	Pspc1	100	92.529	ENSPVAG00000005036	PSPC1	100	94.253	Pteropus_vampyrus
ENSCGRG00000011724	Pspc1	99	57.037	ENSPNYG00000008893	pspc1	100	53.959	Pundamilia_nyererei
ENSCGRG00000011724	Pspc1	90	72.443	ENSPNAG00000016511	pspc1	100	68.097	Pygocentrus_nattereri
ENSCGRG00000011724	Pspc1	100	98.851	ENSRNOG00000020782	Pspc1	100	98.851	Rattus_norvegicus
ENSCGRG00000011724	Pspc1	93	97.331	ENSRBIG00000036057	PSPC1	100	97.331	Rhinopithecus_bieti
ENSCGRG00000011724	Pspc1	100	96.941	ENSRROG00000036334	PSPC1	100	96.941	Rhinopithecus_roxellana
ENSCGRG00000011724	Pspc1	79	87.893	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCGRG00000011724	Pspc1	100	90.667	ENSSHAG00000004696	PSPC1	100	90.667	Sarcophilus_harrisii
ENSCGRG00000011724	Pspc1	82	79.157	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSCGRG00000011724	Pspc1	96	64.023	ENSSMAG00000001761	pspc1	86	75.145	Scophthalmus_maximus
ENSCGRG00000011724	Pspc1	88	68.966	ENSSDUG00000010651	pspc1	85	69.038	Seriola_dumerili
ENSCGRG00000011724	Pspc1	88	64.502	ENSSLDG00000004284	pspc1	96	56.731	Seriola_lalandi_dorsalis
ENSCGRG00000011724	Pspc1	100	89.080	ENSSARG00000000888	PSPC1	100	90.421	Sorex_araneus
ENSCGRG00000011724	Pspc1	99	74.532	ENSSPUG00000008550	PSPC1	99	74.719	Sphenodon_punctatus
ENSCGRG00000011724	Pspc1	90	53.361	ENSSPUG00000001136	-	53	61.219	Sphenodon_punctatus
ENSCGRG00000011724	Pspc1	88	68.866	ENSSPAG00000001921	pspc1	86	67.932	Stegastes_partitus
ENSCGRG00000011724	Pspc1	100	95.211	ENSSSCG00000009569	PSPC1	100	95.992	Sus_scrofa
ENSCGRG00000011724	Pspc1	89	94.004	ENSTGUG00000011295	PSPC1	100	94.004	Taeniopygia_guttata
ENSCGRG00000011724	Pspc1	88	63.057	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSCGRG00000011724	Pspc1	88	64.592	ENSTNIG00000010358	pspc1	89	64.560	Tetraodon_nigroviridis
ENSCGRG00000011724	Pspc1	100	75.526	ENSTBEG00000002361	PSPC1	100	75.670	Tupaia_belangeri
ENSCGRG00000011724	Pspc1	100	95.785	ENSTTRG00000003343	PSPC1	100	95.785	Tursiops_truncatus
ENSCGRG00000011724	Pspc1	67	96.866	ENSUAMG00000012309	PSPC1	100	96.866	Ursus_americanus
ENSCGRG00000011724	Pspc1	93	97.125	ENSUMAG00000013993	PSPC1	100	97.125	Ursus_maritimus
ENSCGRG00000011724	Pspc1	76	98.246	ENSVPAG00000010029	PSPC1	100	98.246	Vicugna_pacos
ENSCGRG00000011724	Pspc1	100	97.132	ENSVVUG00000006414	PSPC1	100	97.409	Vulpes_vulpes
ENSCGRG00000011724	Pspc1	69	71.662	ENSXCOG00000017438	pspc1	85	71.662	Xiphophorus_couchianus
ENSCGRG00000011724	Pspc1	69	71.935	ENSXMAG00000007929	pspc1	85	71.935	Xiphophorus_maculatus