EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000012080 (Gene tree)
Gene ID: -
Gene Symbol: R3hdm1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 129579 bases
Position: chrJH000082.1:422945-552523
Accession: 100765787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000016631	R3H	PF01424.22	2.6e-12	1	1
ENSCGRP00000016632	R3H	PF01424.22	6.5e-12	1	1
ENSCGRP00000016628	R3H	PF01424.22	1.8e-11	1	1
ENSCGRP00000016630	R3H	PF01424.22	1.9e-11	1	1
ENSCGRP00000016629	R3H	PF01424.22	1.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000016878	-	4435	-	ENSCGRP00000016633	427 (aa)	-	-
ENSCGRT00000016873	-	5585	XM_003497710	ENSCGRP00000016628	1137 (aa)	XP_003497758	UPI00022F3A6D
ENSCGRT00000016874	-	4734	-	ENSCGRP00000016629	1173 (aa)	-	-
ENSCGRT00000016875	-	4632	-	ENSCGRP00000016630	1139 (aa)	-	-
ENSCGRT00000016876	-	1270	-	ENSCGRP00000016631	287 (aa)	-	-
ENSCGRT00000016877	-	1458	-	ENSCGRP00000016632	486 (aa)	-	-

Gene Model

Click here to download ENSCGRG00000012080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000012080's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000012080	R3hdm1	80	69.658	ENSCGRG00000003862	R3hdm2	95	57.598
ENSCGRG00000012080	R3hdm1	86	59.132	ENSCGRG00000010727	Arpp21	99	47.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000012080	R3hdm1	99	95.406	ENSG00000048991	R3HDM1	99	95.406	Homo_sapiens
ENSCGRG00000012080	R3hdm1	100	64.548	ENSAPOG00000020850	r3hdm1	97	48.282	Acanthochromis_polyacanthus
ENSCGRG00000012080	R3hdm1	100	91.362	ENSAMEG00000014886	R3HDM1	99	92.091	Ailuropoda_melanoleuca
ENSCGRG00000012080	R3hdm1	90	54.911	ENSACIG00000018791	-	81	56.691	Amphilophus_citrinellus
ENSCGRG00000012080	R3hdm1	100	64.883	ENSAOCG00000005192	r3hdm1	99	47.955	Amphiprion_ocellaris
ENSCGRG00000012080	R3hdm1	100	59.727	ENSAPEG00000016108	r3hdm1	99	45.797	Amphiprion_percula
ENSCGRG00000012080	R3hdm1	100	58.904	ENSATEG00000000232	r3hdm1	99	45.037	Anabas_testudineus
ENSCGRG00000012080	R3hdm1	100	79.070	ENSAPLG00000015231	R3HDM1	99	78.029	Anas_platyrhynchos
ENSCGRG00000012080	R3hdm1	100	77.448	ENSACAG00000001676	R3HDM1	100	77.885	Anolis_carolinensis
ENSCGRG00000012080	R3hdm1	100	93.004	ENSANAG00000035334	R3HDM1	99	91.545	Aotus_nancymaae
ENSCGRG00000012080	R3hdm1	100	57.679	ENSACLG00000027282	r3hdm1	94	48.701	Astatotilapia_calliptera
ENSCGRG00000012080	R3hdm1	79	57.205	ENSAMXG00000020587	arpp21	84	58.130	Astyanax_mexicanus
ENSCGRG00000012080	R3hdm1	99	68.627	ENSAMXG00000012861	R3HDM1	100	70.913	Astyanax_mexicanus
ENSCGRG00000012080	R3hdm1	100	61.935	ENSAMXG00000003536	r3hdm1	100	62.326	Astyanax_mexicanus
ENSCGRG00000012080	R3hdm1	100	91.037	ENSBTAG00000013302	R3HDM1	100	91.125	Bos_taurus
ENSCGRG00000012080	R3hdm1	100	93.004	ENSCJAG00000011718	R3HDM1	99	91.182	Callithrix_jacchus
ENSCGRG00000012080	R3hdm1	100	91.362	ENSCAFG00000005075	R3HDM1	99	92.182	Canis_familiaris
ENSCGRG00000012080	R3hdm1	100	92.593	ENSCAFG00020016119	R3HDM1	100	92.260	Canis_lupus_dingo
ENSCGRG00000012080	R3hdm1	100	91.037	ENSCHIG00000020851	R3HDM1	100	91.125	Capra_hircus
ENSCGRG00000012080	R3hdm1	100	81.533	ENSCAPG00000013043	-	100	81.533	Cavia_aperea
ENSCGRG00000012080	R3hdm1	100	91.638	ENSCPOG00000012784	R3HDM1	100	91.983	Cavia_porcellus
ENSCGRG00000012080	R3hdm1	100	93.416	ENSCCAG00000027199	R3HDM1	99	91.174	Cebus_capucinus
ENSCGRG00000012080	R3hdm1	100	90.949	ENSCATG00000023642	R3HDM1	100	90.861	Cercocebus_atys
ENSCGRG00000012080	R3hdm1	100	93.728	ENSCLAG00000007962	R3HDM1	100	93.728	Chinchilla_lanigera
ENSCGRG00000012080	R3hdm1	100	90.861	ENSCSAG00000016356	R3HDM1	100	90.773	Chlorocebus_sabaeus
ENSCGRG00000012080	R3hdm1	88	76.440	ENSCHOG00000013638	R3HDM1	90	79.890	Choloepus_hoffmanni
ENSCGRG00000012080	R3hdm1	92	76.733	ENSCPBG00000009645	R3HDM1	100	90.406	Chrysemys_picta_bellii
ENSCGRG00000012080	R3hdm1	100	90.365	ENSCANG00000034748	R3HDM1	99	90.909	Colobus_angolensis_palliatus
ENSCGRG00000012080	R3hdm1	100	99.915	ENSCGRG00001012357	R3hdm1	100	99.915	Cricetulus_griseus_chok1gshd
ENSCGRG00000012080	R3hdm1	100	59.184	ENSCSEG00000008944	r3hdm1	99	43.243	Cynoglossus_semilaevis
ENSCGRG00000012080	R3hdm1	100	63.880	ENSCVAG00000007582	r3hdm1	99	47.015	Cyprinodon_variegatus
ENSCGRG00000012080	R3hdm1	79	55.263	ENSDARG00000061081	arpp21	71	40.722	Danio_rerio
ENSCGRG00000012080	R3hdm1	100	85.227	ENSDNOG00000000771	R3HDM1	99	87.794	Dasypus_novemcinctus
ENSCGRG00000012080	R3hdm1	100	96.864	ENSDORG00000027689	-	100	96.864	Dipodomys_ordii
ENSCGRG00000012080	R3hdm1	100	86.711	ENSETEG00000013606	R3HDM1	99	80.455	Echinops_telfairi
ENSCGRG00000012080	R3hdm1	87	48.673	ENSEBUG00000014746	arpp21	97	42.355	Eptatretus_burgeri
ENSCGRG00000012080	R3hdm1	100	91.557	ENSEASG00005007392	R3HDM1	100	95.320	Equus_asinus_asinus
ENSCGRG00000012080	R3hdm1	100	95.819	ENSECAG00000019114	R3HDM1	100	95.320	Equus_caballus
ENSCGRG00000012080	R3hdm1	100	78.405	ENSEEUG00000012589	R3HDM1	91	82.472	Erinaceus_europaeus
ENSCGRG00000012080	R3hdm1	77	69.196	ENSELUG00000014413	r3hdm1	99	52.076	Esox_lucius
ENSCGRG00000012080	R3hdm1	83	73.913	ENSELUG00000004909	R3HDM1	99	54.528	Esox_lucius
ENSCGRG00000012080	R3hdm1	100	94.033	ENSFCAG00000027113	R3HDM1	100	95.813	Felis_catus
ENSCGRG00000012080	R3hdm1	100	79.070	ENSFALG00000013731	R3HDM1	93	69.507	Ficedula_albicollis
ENSCGRG00000012080	R3hdm1	100	94.077	ENSFDAG00000016478	R3HDM1	100	94.077	Fukomys_damarensis
ENSCGRG00000012080	R3hdm1	100	65.870	ENSFHEG00000018713	r3hdm1	99	47.059	Fundulus_heteroclitus
ENSCGRG00000012080	R3hdm1	78	71.353	ENSGMOG00000006042	-	74	67.174	Gadus_morhua
ENSCGRG00000012080	R3hdm1	100	74.048	ENSGALG00000012246	R3HDM1	99	85.246	Gallus_gallus
ENSCGRG00000012080	R3hdm1	100	60.410	ENSGAFG00000006203	r3hdm1	99	45.717	Gambusia_affinis
ENSCGRG00000012080	R3hdm1	80	72.034	ENSGACG00000014925	r3hdm1	99	48.424	Gasterosteus_aculeatus
ENSCGRG00000012080	R3hdm1	95	85.615	ENSGAGG00000007840	R3HDM1	96	82.793	Gopherus_agassizii
ENSCGRG00000012080	R3hdm1	100	95.470	ENSGGOG00000008156	R3HDM1	99	91.273	Gorilla_gorilla
ENSCGRG00000012080	R3hdm1	100	62.876	ENSHBUG00000015737	R3HDM1	90	58.015	Haplochromis_burtoni
ENSCGRG00000012080	R3hdm1	100	94.077	ENSHGLG00000015718	R3HDM1	100	94.077	Heterocephalus_glaber_female
ENSCGRG00000012080	R3hdm1	100	65.963	ENSHGLG00100015374	-	99	68.091	Heterocephalus_glaber_male
ENSCGRG00000012080	R3hdm1	100	93.728	ENSHGLG00100003184	-	100	93.728	Heterocephalus_glaber_male
ENSCGRG00000012080	R3hdm1	56	58.896	ENSHCOG00000005036	-	71	38.028	Hippocampus_comes
ENSCGRG00000012080	R3hdm1	84	59.472	ENSHCOG00000013366	r3hdm1	88	60.500	Hippocampus_comes
ENSCGRG00000012080	R3hdm1	99	69.831	ENSIPUG00000001676	R3HDM1	99	65.311	Ictalurus_punctatus
ENSCGRG00000012080	R3hdm1	91	61.978	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSCGRG00000012080	R3hdm1	56	57.143	ENSIPUG00000020552	arpp21	85	32.500	Ictalurus_punctatus
ENSCGRG00000012080	R3hdm1	100	94.774	ENSSTOG00000007572	R3HDM1	100	94.774	Ictidomys_tridecemlineatus
ENSCGRG00000012080	R3hdm1	100	95.122	ENSJJAG00000018208	-	100	95.122	Jaculus_jaculus
ENSCGRG00000012080	R3hdm1	56	75.439	ENSKMAG00000013373	-	82	75.439	Kryptolebias_marmoratus
ENSCGRG00000012080	R3hdm1	100	58.020	ENSLBEG00000027981	-	94	60.592	Labrus_bergylta
ENSCGRG00000012080	R3hdm1	100	75.000	ENSLACG00000005334	R3HDM1	100	72.267	Latimeria_chalumnae
ENSCGRG00000012080	R3hdm1	99	72.697	ENSLOCG00000001641	r3hdm1	100	66.236	Lepisosteus_oculatus
ENSCGRG00000012080	R3hdm1	100	91.205	ENSLAFG00000009065	R3HDM1	100	91.205	Loxodonta_africana
ENSCGRG00000012080	R3hdm1	100	91.030	ENSMFAG00000030331	R3HDM1	100	95.813	Macaca_fascicularis
ENSCGRG00000012080	R3hdm1	100	91.030	ENSMMUG00000009844	R3HDM1	99	90.992	Macaca_mulatta
ENSCGRG00000012080	R3hdm1	100	91.030	ENSMNEG00000027793	R3HDM1	100	95.813	Macaca_nemestrina
ENSCGRG00000012080	R3hdm1	100	91.030	ENSMLEG00000043189	R3HDM1	99	91.182	Mandrillus_leucophaeus
ENSCGRG00000012080	R3hdm1	100	65.188	ENSMAMG00000004532	r3hdm1	92	58.969	Mastacembelus_armatus
ENSCGRG00000012080	R3hdm1	100	62.876	ENSMZEG00005003157	r3hdm1	92	58.206	Maylandia_zebra
ENSCGRG00000012080	R3hdm1	100	78.405	ENSMGAG00000012461	R3HDM1	99	77.355	Meleagris_gallopavo
ENSCGRG00000012080	R3hdm1	100	99.652	ENSMAUG00000010315	R3hdm1	100	99.652	Mesocricetus_auratus
ENSCGRG00000012080	R3hdm1	100	84.321	ENSMICG00000042655	-	100	84.729	Microcebus_murinus
ENSCGRG00000012080	R3hdm1	100	94.033	ENSMICG00000005900	-	99	90.554	Microcebus_murinus
ENSCGRG00000012080	R3hdm1	100	99.303	ENSMOCG00000019833	-	100	99.303	Microtus_ochrogaster
ENSCGRG00000012080	R3hdm1	100	81.090	ENSMODG00000000923	R3HDM1	97	78.727	Monodelphis_domestica
ENSCGRG00000012080	R3hdm1	100	65.646	ENSMALG00000009000	r3hdm1	92	57.714	Monopterus_albus
ENSCGRG00000012080	R3hdm1	100	98.606	MGP_CAROLIEiJ_G0014543	R3hdm1	100	98.606	Mus_caroli
ENSCGRG00000012080	R3hdm1	100	98.606	ENSMUSG00000056211	R3hdm1	100	98.606	Mus_musculus
ENSCGRG00000012080	R3hdm1	100	98.258	MGP_PahariEiJ_G0027779	R3hdm1	100	98.258	Mus_pahari
ENSCGRG00000012080	R3hdm1	100	98.606	MGP_SPRETEiJ_G0015350	R3hdm1	100	98.606	Mus_spretus
ENSCGRG00000012080	R3hdm1	100	91.362	ENSMPUG00000002412	R3HDM1	99	91.727	Mustela_putorius_furo
ENSCGRG00000012080	R3hdm1	100	91.030	ENSMLUG00000013824	R3HDM1	99	90.926	Myotis_lucifugus
ENSCGRG00000012080	R3hdm1	100	96.167	ENSNGAG00000001313	-	100	96.167	Nannospalax_galili
ENSCGRG00000012080	R3hdm1	100	90.365	ENSNLEG00000008622	R3HDM1	99	91.182	Nomascus_leucogenys
ENSCGRG00000012080	R3hdm1	85	73.253	ENSMEUG00000011784	R3HDM1	100	71.312	Notamacropus_eugenii
ENSCGRG00000012080	R3hdm1	100	94.774	ENSODEG00000008607	R3HDM1	100	94.774	Octodon_degus
ENSCGRG00000012080	R3hdm1	80	71.008	ENSONIG00000012017	r3hdm1	98	47.227	Oreochromis_niloticus
ENSCGRG00000012080	R3hdm1	100	85.714	ENSOANG00000007987	R3HDM1	99	79.566	Ornithorhynchus_anatinus
ENSCGRG00000012080	R3hdm1	100	90.365	ENSOCUG00000017366	R3HDM1	98	90.854	Oryctolagus_cuniculus
ENSCGRG00000012080	R3hdm1	100	64.846	ENSORLG00000004297	r3hdm1	99	46.754	Oryzias_latipes
ENSCGRG00000012080	R3hdm1	100	64.846	ENSORLG00020019252	-	93	60.526	Oryzias_latipes_hni
ENSCGRG00000012080	R3hdm1	100	64.846	ENSORLG00015017355	r3hdm1	99	46.604	Oryzias_latipes_hsok
ENSCGRG00000012080	R3hdm1	100	63.279	ENSOMEG00000003882	-	94	58.317	Oryzias_melastigma
ENSCGRG00000012080	R3hdm1	100	90.365	ENSOGAG00000003136	R3HDM1	99	91.182	Otolemur_garnettii
ENSCGRG00000012080	R3hdm1	100	90.698	ENSOARG00000010788	R3HDM1	99	90.909	Ovis_aries
ENSCGRG00000012080	R3hdm1	100	91.030	ENSPPAG00000027858	R3HDM1	99	91.371	Pan_paniscus
ENSCGRG00000012080	R3hdm1	100	94.239	ENSPPRG00000002626	R3HDM1	99	91.727	Panthera_pardus
ENSCGRG00000012080	R3hdm1	100	94.239	ENSPTIG00000016581	R3HDM1	99	91.455	Panthera_tigris_altaica
ENSCGRG00000012080	R3hdm1	100	91.030	ENSPTRG00000012494	R3HDM1	99	91.545	Pan_troglodytes
ENSCGRG00000012080	R3hdm1	100	91.030	ENSPANG00000026448	R3HDM1	99	91.091	Papio_anubis
ENSCGRG00000012080	R3hdm1	97	66.549	ENSPKIG00000004328	r3hdm1	91	74.921	Paramormyrops_kingsleyae
ENSCGRG00000012080	R3hdm1	100	65.862	ENSPKIG00000011224	R3HDM1	90	63.260	Paramormyrops_kingsleyae
ENSCGRG00000012080	R3hdm1	100	79.402	ENSPSIG00000012915	R3HDM1	99	76.944	Pelodiscus_sinensis
ENSCGRG00000012080	R3hdm1	87	54.139	ENSPMGG00000011264	-	91	54.691	Periophthalmus_magnuspinnatus
ENSCGRG00000012080	R3hdm1	100	99.303	ENSPEMG00000015187	R3hdm1	100	99.303	Peromyscus_maniculatus_bairdii
ENSCGRG00000012080	R3hdm1	80	62.857	ENSPMAG00000003369	-	98	43.008	Petromyzon_marinus
ENSCGRG00000012080	R3hdm1	100	89.619	ENSPCIG00000002491	R3HDM1	100	88.725	Phascolarctos_cinereus
ENSCGRG00000012080	R3hdm1	100	63.245	ENSPFOG00000015036	r3hdm1	99	47.179	Poecilia_formosa
ENSCGRG00000012080	R3hdm1	100	59.122	ENSPLAG00000018042	r3hdm1	99	45.533	Poecilia_latipinna
ENSCGRG00000012080	R3hdm1	100	59.122	ENSPMEG00000023947	r3hdm1	99	45.577	Poecilia_mexicana
ENSCGRG00000012080	R3hdm1	100	64.164	ENSPREG00000007902	r3hdm1	88	61.814	Poecilia_reticulata
ENSCGRG00000012080	R3hdm1	100	87.170	ENSPPYG00000012815	R3HDM1	99	90.091	Pongo_abelii
ENSCGRG00000012080	R3hdm1	100	87.375	ENSPCAG00000006208	R3HDM1	99	79.163	Procavia_capensis
ENSCGRG00000012080	R3hdm1	100	88.272	ENSPCOG00000012698	R3HDM1	99	89.672	Propithecus_coquereli
ENSCGRG00000012080	R3hdm1	100	81.728	ENSPVAG00000006098	R3HDM1	99	82.818	Pteropus_vampyrus
ENSCGRG00000012080	R3hdm1	100	62.876	ENSPNYG00000008701	-	97	60.287	Pundamilia_nyererei
ENSCGRG00000012080	R3hdm1	83	49.020	ENSPNAG00000004162	arpp21	57	57.600	Pygocentrus_nattereri
ENSCGRG00000012080	R3hdm1	93	63.084	ENSPNAG00000013952	r3hdm1	100	62.998	Pygocentrus_nattereri
ENSCGRG00000012080	R3hdm1	80	75.641	ENSPNAG00000005436	R3HDM1	99	75.563	Pygocentrus_nattereri
ENSCGRG00000012080	R3hdm1	100	96.130	ENSRNOG00000004099	R3hdm1	100	96.130	Rattus_norvegicus
ENSCGRG00000012080	R3hdm1	100	86.731	ENSRBIG00000033317	R3HDM1	100	97.417	Rhinopithecus_bieti
ENSCGRG00000012080	R3hdm1	100	91.030	ENSRROG00000034534	R3HDM1	99	91.083	Rhinopithecus_roxellana
ENSCGRG00000012080	R3hdm1	100	92.798	ENSSBOG00000020389	R3HDM1	99	91.000	Saimiri_boliviensis_boliviensis
ENSCGRG00000012080	R3hdm1	100	85.762	ENSSHAG00000016999	R3HDM1	99	82.305	Sarcophilus_harrisii
ENSCGRG00000012080	R3hdm1	100	66.124	ENSSFOG00015019851	-	99	56.453	Scleropages_formosus
ENSCGRG00000012080	R3hdm1	100	70.205	ENSSFOG00015014134	r3hdm1	100	69.660	Scleropages_formosus
ENSCGRG00000012080	R3hdm1	100	62.069	ENSSMAG00000001669	r3hdm1	99	43.819	Scophthalmus_maximus
ENSCGRG00000012080	R3hdm1	100	64.626	ENSSDUG00000010749	r3hdm1	99	47.137	Seriola_dumerili
ENSCGRG00000012080	R3hdm1	100	63.333	ENSSLDG00000004499	r3hdm1	99	46.574	Seriola_lalandi_dorsalis
ENSCGRG00000012080	R3hdm1	100	77.409	ENSSARG00000000352	-	69	82.060	Sorex_araneus
ENSCGRG00000012080	R3hdm1	100	80.795	ENSSPUG00000004167	R3HDM1	99	79.257	Sphenodon_punctatus
ENSCGRG00000012080	R3hdm1	100	65.870	ENSSPAG00000004648	r3hdm1	99	48.814	Stegastes_partitus
ENSCGRG00000012080	R3hdm1	100	95.122	ENSSSCG00000015692	R3HDM1	100	91.828	Sus_scrofa
ENSCGRG00000012080	R3hdm1	100	78.738	ENSTGUG00000011750	R3HDM1	99	72.267	Taeniopygia_guttata
ENSCGRG00000012080	R3hdm1	89	59.778	ENSTRUG00000011654	r3hdm1	93	46.708	Takifugu_rubripes
ENSCGRG00000012080	R3hdm1	89	65.926	ENSTNIG00000010362	r3hdm1	95	46.259	Tetraodon_nigroviridis
ENSCGRG00000012080	R3hdm1	91	93.424	ENSTTRG00000003935	R3HDM1	99	85.259	Tursiops_truncatus
ENSCGRG00000012080	R3hdm1	100	91.362	ENSUAMG00000024806	R3HDM1	99	91.697	Ursus_americanus
ENSCGRG00000012080	R3hdm1	100	86.063	ENSUMAG00000005552	R3HDM1	99	88.525	Ursus_maritimus
ENSCGRG00000012080	R3hdm1	93	89.474	ENSVPAG00000007333	R3HDM1	93	89.474	Vicugna_pacos
ENSCGRG00000012080	R3hdm1	100	95.470	ENSVVUG00000006457	R3HDM1	100	91.909	Vulpes_vulpes
ENSCGRG00000012080	R3hdm1	86	82.423	ENSXETG00000019330	r3hdm1	100	66.566	Xenopus_tropicalis
ENSCGRG00000012080	R3hdm1	83	61.190	ENSXCOG00000017448	r3hdm1	94	49.744	Xiphophorus_couchianus
ENSCGRG00000012080	R3hdm1	100	64.548	ENSXMAG00000007885	r3hdm1	99	46.901	Xiphophorus_maculatus