EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00000013480 (Gene tree)
Gene ID: -
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 14079 bases
Position: chrJH000137.1:656557-670635
Accession: 100765798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000018518	UPF1_Zn_bind	PF09416.10	5.3e-75	1	1
ENSCGRP00000018518	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000018788	-	3213	XM_003499102	ENSCGRP00000018518	1070 (aa)	XP_003499150	-

Gene Model

Click here to download ENSCGRG00000013480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000013480's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000013480	Upf1	99	98.129	ENSG00000005007	UPF1	95	98.129	Homo_sapiens
ENSCGRG00000013480	Upf1	98	92.140	ENSAPOG00000023773	upf1	95	92.330	Acanthochromis_polyacanthus
ENSCGRG00000013480	Upf1	98	93.352	ENSAPOG00000010916	-	95	93.447	Acanthochromis_polyacanthus
ENSCGRG00000013480	Upf1	99	97.950	ENSAMEG00000011474	UPF1	95	97.950	Ailuropoda_melanoleuca
ENSCGRG00000013480	Upf1	98	91.769	ENSACIG00000019949	upf1	95	92.330	Amphilophus_citrinellus
ENSCGRG00000013480	Upf1	97	93.340	ENSACIG00000010985	-	100	93.436	Amphilophus_citrinellus
ENSCGRG00000013480	Upf1	98	91.627	ENSAOCG00000018519	upf1	95	92.221	Amphiprion_ocellaris
ENSCGRG00000013480	Upf1	98	93.257	ENSAOCG00000006352	-	100	90.848	Amphiprion_ocellaris
ENSCGRG00000013480	Upf1	98	91.627	ENSAPEG00000016344	upf1	95	92.221	Amphiprion_percula
ENSCGRG00000013480	Upf1	98	93.257	ENSAPEG00000006292	-	100	90.848	Amphiprion_percula
ENSCGRG00000013480	Upf1	98	89.658	ENSATEG00000017867	upf1	95	91.581	Anabas_testudineus
ENSCGRG00000013480	Upf1	98	93.352	ENSATEG00000016606	-	95	93.447	Anabas_testudineus
ENSCGRG00000013480	Upf1	98	97.621	ENSAPLG00000009175	UPF1	99	97.621	Anas_platyrhynchos
ENSCGRG00000013480	Upf1	99	97.441	ENSANAG00000024107	UPF1	95	97.441	Aotus_nancymaae
ENSCGRG00000013480	Upf1	98	91.580	ENSACLG00000007181	upf1	95	92.140	Astatotilapia_calliptera
ENSCGRG00000013480	Upf1	98	93.156	ENSACLG00000022630	-	95	93.156	Astatotilapia_calliptera
ENSCGRG00000013480	Upf1	98	93.637	ENSAMXG00000042187	upf1	95	94.207	Astyanax_mexicanus
ENSCGRG00000013480	Upf1	99	98.221	ENSBTAG00000020922	UPF1	95	98.221	Bos_taurus
ENSCGRG00000013480	Upf1	86	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSCGRG00000013480	Upf1	99	98.129	ENSCJAG00000019627	UPF1	95	98.129	Callithrix_jacchus
ENSCGRG00000013480	Upf1	99	98.221	ENSCAFG00000014578	UPF1	95	98.221	Canis_familiaris
ENSCGRG00000013480	Upf1	99	97.191	ENSCAFG00020012347	UPF1	94	97.191	Canis_lupus_dingo
ENSCGRG00000013480	Upf1	99	97.307	ENSCHIG00000011018	UPF1	96	97.307	Capra_hircus
ENSCGRG00000013480	Upf1	98	98.859	ENSTSYG00000008877	UPF1	99	97.572	Carlito_syrichta
ENSCGRG00000013480	Upf1	99	98.008	ENSCAPG00000005758	UPF1	96	98.008	Cavia_aperea
ENSCGRG00000013480	Upf1	99	97.453	ENSCPOG00000025463	UPF1	96	97.453	Cavia_porcellus
ENSCGRG00000013480	Upf1	99	98.129	ENSCCAG00000032175	UPF1	95	98.129	Cebus_capucinus
ENSCGRG00000013480	Upf1	98	99.046	ENSCATG00000040306	UPF1	98	99.046	Cercocebus_atys
ENSCGRG00000013480	Upf1	99	98.310	ENSCLAG00000004037	UPF1	100	99.240	Chinchilla_lanigera
ENSCGRG00000013480	Upf1	99	96.379	ENSCSAG00000005276	UPF1	95	96.379	Chlorocebus_sabaeus
ENSCGRG00000013480	Upf1	99	96.078	ENSCPBG00000012513	UPF1	95	96.078	Chrysemys_picta_bellii
ENSCGRG00000013480	Upf1	72	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSCGRG00000013480	Upf1	98	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSCGRG00000013480	Upf1	99	97.944	ENSCANG00000029819	UPF1	99	97.944	Colobus_angolensis_palliatus
ENSCGRG00000013480	Upf1	99	97.942	ENSCGRG00001021067	Upf1	95	97.942	Cricetulus_griseus_chok1gshd
ENSCGRG00000013480	Upf1	98	93.346	ENSCSEG00000016159	-	95	93.346	Cynoglossus_semilaevis
ENSCGRG00000013480	Upf1	98	86.895	ENSCSEG00000017239	upf1	94	87.226	Cynoglossus_semilaevis
ENSCGRG00000013480	Upf1	98	92.972	ENSCVAG00000010561	upf1	95	92.972	Cyprinodon_variegatus
ENSCGRG00000013480	Upf1	98	93.447	ENSDARG00000016302	upf1	95	94.017	Danio_rerio
ENSCGRG00000013480	Upf1	99	95.970	ENSDORG00000009984	Upf1	96	95.970	Dipodomys_ordii
ENSCGRG00000013480	Upf1	83	73.296	FBgn0030354	Upf1	80	69.239	Drosophila_melanogaster
ENSCGRG00000013480	Upf1	53	87.170	ENSEBUG00000010069	upf1	92	87.170	Eptatretus_burgeri
ENSCGRG00000013480	Upf1	99	97.285	ENSEASG00005006549	UPF1	95	97.285	Equus_asinus_asinus
ENSCGRG00000013480	Upf1	99	97.285	ENSECAG00000010639	UPF1	95	97.285	Equus_caballus
ENSCGRG00000013480	Upf1	98	91.974	ENSELUG00000012916	-	95	92.547	Esox_lucius
ENSCGRG00000013480	Upf1	98	91.210	ENSELUG00000020917	upf1	95	91.493	Esox_lucius
ENSCGRG00000013480	Upf1	99	98.127	ENSFCAG00000009757	UPF1	95	98.127	Felis_catus
ENSCGRG00000013480	Upf1	99	95.362	ENSFALG00000009312	UPF1	98	95.362	Ficedula_albicollis
ENSCGRG00000013480	Upf1	98	99.144	ENSFDAG00000014816	UPF1	100	99.144	Fukomys_damarensis
ENSCGRG00000013480	Upf1	98	89.380	ENSFHEG00000006428	upf1	94	89.380	Fundulus_heteroclitus
ENSCGRG00000013480	Upf1	90	92.740	ENSFHEG00000016276	-	96	92.922	Fundulus_heteroclitus
ENSCGRG00000013480	Upf1	98	92.877	ENSGMOG00000007541	upf1	95	93.827	Gadus_morhua
ENSCGRG00000013480	Upf1	99	96.442	ENSGALG00000003220	UPF1	95	96.442	Gallus_gallus
ENSCGRG00000013480	Upf1	98	92.395	ENSGAFG00000004831	upf1	95	92.871	Gambusia_affinis
ENSCGRG00000013480	Upf1	66	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSCGRG00000013480	Upf1	99	96.078	ENSGAGG00000022217	UPF1	96	96.078	Gopherus_agassizii
ENSCGRG00000013480	Upf1	98	98.004	ENSGGOG00000002608	UPF1	99	98.004	Gorilla_gorilla
ENSCGRG00000013480	Upf1	84	85.057	ENSHBUG00000014694	upf1	90	85.057	Haplochromis_burtoni
ENSCGRG00000013480	Upf1	85	100.000	ENSHBUG00000008939	upf1	90	100.000	Haplochromis_burtoni
ENSCGRG00000013480	Upf1	99	97.844	ENSHGLG00000010900	UPF1	95	97.844	Heterocephalus_glaber_female
ENSCGRG00000013480	Upf1	99	96.439	ENSHGLG00100005904	UPF1	98	96.439	Heterocephalus_glaber_male
ENSCGRG00000013480	Upf1	98	92.300	ENSHCOG00000008918	upf1	100	92.440	Hippocampus_comes
ENSCGRG00000013480	Upf1	98	94.112	ENSIPUG00000005108	UPF1	95	94.587	Ictalurus_punctatus
ENSCGRG00000013480	Upf1	99	98.129	ENSSTOG00000009196	UPF1	95	98.129	Ictidomys_tridecemlineatus
ENSCGRG00000013480	Upf1	99	98.597	ENSJJAG00000023151	Upf1	95	98.597	Jaculus_jaculus
ENSCGRG00000013480	Upf1	98	93.257	ENSKMAG00000004962	upf1	95	93.257	Kryptolebias_marmoratus
ENSCGRG00000013480	Upf1	99	92.568	ENSLBEG00000027848	-	95	93.257	Labrus_bergylta
ENSCGRG00000013480	Upf1	98	90.253	ENSLBEG00000014862	upf1	96	90.994	Labrus_bergylta
ENSCGRG00000013480	Upf1	65	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSCGRG00000013480	Upf1	98	95.627	ENSLOCG00000002072	upf1	95	95.627	Lepisosteus_oculatus
ENSCGRG00000013480	Upf1	99	98.034	ENSLAFG00000014963	UPF1	95	98.034	Loxodonta_africana
ENSCGRG00000013480	Upf1	99	98.129	ENSMFAG00000037748	UPF1	95	98.129	Macaca_fascicularis
ENSCGRG00000013480	Upf1	99	98.129	ENSMMUG00000023286	UPF1	95	98.129	Macaca_mulatta
ENSCGRG00000013480	Upf1	99	98.129	ENSMNEG00000000046	UPF1	95	98.129	Macaca_nemestrina
ENSCGRG00000013480	Upf1	98	99.049	ENSMLEG00000028404	UPF1	100	99.049	Mandrillus_leucophaeus
ENSCGRG00000013480	Upf1	98	92.593	ENSMAMG00000006231	-	95	93.162	Mastacembelus_armatus
ENSCGRG00000013480	Upf1	98	90.552	ENSMAMG00000006229	upf1	95	91.674	Mastacembelus_armatus
ENSCGRG00000013480	Upf1	98	90.561	ENSMZEG00005003489	upf1	95	91.823	Maylandia_zebra
ENSCGRG00000013480	Upf1	98	93.156	ENSMZEG00005016386	-	95	93.156	Maylandia_zebra
ENSCGRG00000013480	Upf1	98	97.148	ENSMGAG00000004745	UPF1	100	97.148	Meleagris_gallopavo
ENSCGRG00000013480	Upf1	99	99.154	ENSMAUG00000011398	Upf1	96	99.154	Mesocricetus_auratus
ENSCGRG00000013480	Upf1	99	97.194	ENSMICG00000001659	UPF1	95	97.194	Microcebus_murinus
ENSCGRG00000013480	Upf1	99	98.877	ENSMOCG00000005699	Upf1	95	98.877	Microtus_ochrogaster
ENSCGRG00000013480	Upf1	98	91.698	ENSMMOG00000007881	upf1	94	92.183	Mola_mola
ENSCGRG00000013480	Upf1	98	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSCGRG00000013480	Upf1	99	97.383	ENSMODG00000003689	UPF1	95	97.431	Monodelphis_domestica
ENSCGRG00000013480	Upf1	99	90.808	ENSMALG00000018100	-	96	90.901	Monopterus_albus
ENSCGRG00000013480	Upf1	98	91.627	ENSMALG00000000144	upf1	95	91.912	Monopterus_albus
ENSCGRG00000013480	Upf1	99	98.784	MGP_CAROLIEiJ_G0031142	Upf1	95	98.784	Mus_caroli
ENSCGRG00000013480	Upf1	99	98.784	ENSMUSG00000058301	Upf1	95	98.784	Mus_musculus
ENSCGRG00000013480	Upf1	99	98.784	MGP_PahariEiJ_G0021607	Upf1	95	98.784	Mus_pahari
ENSCGRG00000013480	Upf1	99	98.784	MGP_SPRETEiJ_G0032260	Upf1	95	98.784	Mus_spretus
ENSCGRG00000013480	Upf1	99	97.191	ENSMPUG00000015516	UPF1	94	97.191	Mustela_putorius_furo
ENSCGRG00000013480	Upf1	99	97.004	ENSMLUG00000012122	UPF1	95	97.004	Myotis_lucifugus
ENSCGRG00000013480	Upf1	99	98.690	ENSNGAG00000024107	Upf1	95	98.690	Nannospalax_galili
ENSCGRG00000013480	Upf1	97	92.308	ENSNBRG00000022069	-	100	92.308	Neolamprologus_brichardi
ENSCGRG00000013480	Upf1	98	89.782	ENSNBRG00000000670	upf1	95	90.341	Neolamprologus_brichardi
ENSCGRG00000013480	Upf1	98	93.251	ENSNLEG00000006062	UPF1	100	93.251	Nomascus_leucogenys
ENSCGRG00000013480	Upf1	81	93.333	ENSMEUG00000014146	-	78	93.333	Notamacropus_eugenii
ENSCGRG00000013480	Upf1	98	90.304	ENSOPRG00000014018	UPF1	100	90.304	Ochotona_princeps
ENSCGRG00000013480	Upf1	99	98.404	ENSODEG00000012426	UPF1	96	98.404	Octodon_degus
ENSCGRG00000013480	Upf1	98	93.251	ENSONIG00000012729	-	95	93.251	Oreochromis_niloticus
ENSCGRG00000013480	Upf1	98	91.028	ENSONIG00000010452	upf1	95	92.293	Oreochromis_niloticus
ENSCGRG00000013480	Upf1	100	96.561	ENSOANG00000004568	UPF1	95	96.561	Ornithorhynchus_anatinus
ENSCGRG00000013480	Upf1	98	93.067	ENSORLG00000008453	upf1	95	93.067	Oryzias_latipes
ENSCGRG00000013480	Upf1	98	93.067	ENSORLG00020014758	upf1	95	93.067	Oryzias_latipes_hni
ENSCGRG00000013480	Upf1	98	93.067	ENSORLG00015010165	upf1	100	89.210	Oryzias_latipes_hsok
ENSCGRG00000013480	Upf1	98	93.162	ENSOMEG00000003665	upf1	95	93.162	Oryzias_melastigma
ENSCGRG00000013480	Upf1	99	97.194	ENSOGAG00000012866	UPF1	95	97.194	Otolemur_garnettii
ENSCGRG00000013480	Upf1	95	98.817	ENSOARG00000010739	UPF1	93	98.817	Ovis_aries
ENSCGRG00000013480	Upf1	99	97.944	ENSPPAG00000043884	UPF1	98	97.944	Pan_paniscus
ENSCGRG00000013480	Upf1	99	98.127	ENSPPRG00000023470	UPF1	95	98.127	Panthera_pardus
ENSCGRG00000013480	Upf1	98	96.194	ENSPTIG00000010159	UPF1	99	96.194	Panthera_tigris_altaica
ENSCGRG00000013480	Upf1	99	98.129	ENSPTRG00000010721	UPF1	95	98.129	Pan_troglodytes
ENSCGRG00000013480	Upf1	99	98.129	ENSPANG00000008847	UPF1	95	98.129	Papio_anubis
ENSCGRG00000013480	Upf1	89	95.816	ENSPKIG00000006069	upf1	91	95.816	Paramormyrops_kingsleyae
ENSCGRG00000013480	Upf1	71	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSCGRG00000013480	Upf1	98	90.047	ENSPMGG00000017327	upf1	95	90.255	Periophthalmus_magnuspinnatus
ENSCGRG00000013480	Upf1	99	98.971	ENSPEMG00000001085	Upf1	95	98.971	Peromyscus_maniculatus_bairdii
ENSCGRG00000013480	Upf1	99	88.263	ENSPMAG00000001206	upf1	95	88.263	Petromyzon_marinus
ENSCGRG00000013480	Upf1	99	96.262	ENSPCIG00000006156	UPF1	95	96.262	Phascolarctos_cinereus
ENSCGRG00000013480	Upf1	98	92.490	ENSPLAG00000016232	-	95	92.966	Poecilia_latipinna
ENSCGRG00000013480	Upf1	98	90.301	ENSPLAG00000018155	-	95	90.301	Poecilia_latipinna
ENSCGRG00000013480	Upf1	98	92.586	ENSPMEG00000016319	-	95	93.061	Poecilia_mexicana
ENSCGRG00000013480	Upf1	98	90.806	ENSPMEG00000011443	-	95	90.806	Poecilia_mexicana
ENSCGRG00000013480	Upf1	98	92.300	ENSPREG00000011247	-	95	92.776	Poecilia_reticulata
ENSCGRG00000013480	Upf1	98	90.704	ENSPREG00000009940	upf1	94	90.704	Poecilia_reticulata
ENSCGRG00000013480	Upf1	99	92.891	ENSPPYG00000009752	UPF1	94	92.891	Pongo_abelii
ENSCGRG00000013480	Upf1	69	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSCGRG00000013480	Upf1	99	98.499	ENSPCOG00000023813	UPF1	95	98.499	Propithecus_coquereli
ENSCGRG00000013480	Upf1	67	100.000	ENSPVAG00000003183	UPF1	63	100.000	Pteropus_vampyrus
ENSCGRG00000013480	Upf1	98	90.561	ENSPNYG00000003694	upf1	95	91.823	Pundamilia_nyererei
ENSCGRG00000013480	Upf1	98	93.156	ENSPNYG00000016731	-	95	93.156	Pundamilia_nyererei
ENSCGRG00000013480	Upf1	98	93.637	ENSPNAG00000025614	upf1	95	94.207	Pygocentrus_nattereri
ENSCGRG00000013480	Upf1	99	98.877	ENSRNOG00000020134	Upf1	95	98.877	Rattus_norvegicus
ENSCGRG00000013480	Upf1	99	95.783	ENSRBIG00000013894	UPF1	98	97.619	Rhinopithecus_bieti
ENSCGRG00000013480	Upf1	99	98.126	ENSRROG00000040935	UPF1	99	98.126	Rhinopithecus_roxellana
ENSCGRG00000013480	Upf1	80	54.988	YMR080C	NAM7	87	54.988	Saccharomyces_cerevisiae
ENSCGRG00000013480	Upf1	98	98.952	ENSSBOG00000023632	UPF1	96	98.952	Saimiri_boliviensis_boliviensis
ENSCGRG00000013480	Upf1	98	98.291	ENSSHAG00000010499	UPF1	100	98.291	Sarcophilus_harrisii
ENSCGRG00000013480	Upf1	98	95.913	ENSSFOG00015021095	upf1	99	95.817	Scleropages_formosus
ENSCGRG00000013480	Upf1	98	89.878	ENSSMAG00000005055	upf1	95	90.730	Scophthalmus_maximus
ENSCGRG00000013480	Upf1	98	93.257	ENSSMAG00000021018	-	95	93.352	Scophthalmus_maximus
ENSCGRG00000013480	Upf1	98	90.739	ENSSDUG00000013320	upf1	95	91.674	Seriola_dumerili
ENSCGRG00000013480	Upf1	98	93.542	ENSSDUG00000009629	-	95	93.637	Seriola_dumerili
ENSCGRG00000013480	Upf1	98	93.542	ENSSLDG00000006878	-	95	93.637	Seriola_lalandi_dorsalis
ENSCGRG00000013480	Upf1	98	91.596	ENSSLDG00000020868	upf1	95	91.989	Seriola_lalandi_dorsalis
ENSCGRG00000013480	Upf1	99	96.168	ENSSPUG00000010538	UPF1	95	96.168	Sphenodon_punctatus
ENSCGRG00000013480	Upf1	98	89.829	ENSSPAG00000000003	upf1	95	89.962	Stegastes_partitus
ENSCGRG00000013480	Upf1	98	93.346	ENSSPAG00000011521	-	95	93.346	Stegastes_partitus
ENSCGRG00000013480	Upf1	99	98.127	ENSSSCG00000039301	UPF1	99	98.097	Sus_scrofa
ENSCGRG00000013480	Upf1	81	90.679	ENSTGUG00000001057	UPF1	91	95.935	Taeniopygia_guttata
ENSCGRG00000013480	Upf1	98	92.395	ENSTRUG00000005131	-	95	92.490	Takifugu_rubripes
ENSCGRG00000013480	Upf1	99	91.296	ENSTRUG00000000150	upf1	95	91.296	Takifugu_rubripes
ENSCGRG00000013480	Upf1	99	93.346	ENSTTRG00000011544	UPF1	94	93.346	Tursiops_truncatus
ENSCGRG00000013480	Upf1	99	97.097	ENSUAMG00000007093	UPF1	94	97.097	Ursus_americanus
ENSCGRG00000013480	Upf1	99	98.032	ENSUMAG00000006652	UPF1	99	98.097	Ursus_maritimus
ENSCGRG00000013480	Upf1	99	97.191	ENSVVUG00000007797	UPF1	94	97.191	Vulpes_vulpes
ENSCGRG00000013480	Upf1	98	83.318	ENSXETG00000013602	upf1	93	83.318	Xenopus_tropicalis
ENSCGRG00000013480	Upf1	97	92.706	ENSXCOG00000005764	-	100	93.186	Xiphophorus_couchianus
ENSCGRG00000013480	Upf1	96	89.951	ENSXCOG00000015275	-	92	89.951	Xiphophorus_couchianus
ENSCGRG00000013480	Upf1	98	92.395	ENSXMAG00000002540	-	95	92.871	Xiphophorus_maculatus
ENSCGRG00000013480	Upf1	99	90.207	ENSXMAG00000001703	-	95	90.207	Xiphophorus_maculatus