EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000014355 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 5128 bases
Position: chrJH000325.1:1612079-1617206
Accession: 100772252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000019708	LSM	PF01423.22	3.6e-21	1	1
ENSCGRP00000019707	LSM	PF01423.22	5.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000019992	-	267	-	ENSCGRP00000019709	88 (aa)	-	-
ENSCGRT00000019990	-	3664	-	ENSCGRP00000019707	360 (aa)	-	-
ENSCGRT00000019991	-	2719	XM_003502589	ENSCGRP00000019708	104 (aa)	XP_003502637	G3HFB8

Gene Model

Click here to download ENSCGRG00000014355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000014355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000014355	-	68	33.803	ENSCGRG00000000133	-	82	33.803
ENSCGRG00000014355	-	65	36.765	ENSCGRG00000011028	-	87	36.765
ENSCGRG00000014355	-	87	88.889	ENSCGRG00000006821	-	93	87.912
ENSCGRG00000014355	-	68	36.620	ENSCGRG00000002261	Snrpg	83	39.437
ENSCGRG00000014355	-	68	35.211	ENSCGRG00000008511	-	81	35.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000014355	-	97	99.010	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSCGRG00000014355	-	91	94.737	ENSAPOG00000015573	lsm7	83	93.750	Acanthochromis_polyacanthus
ENSCGRG00000014355	-	98	98.039	ENSAMEG00000005484	LSM7	99	98.039	Ailuropoda_melanoleuca
ENSCGRG00000014355	-	93	93.814	ENSACIG00000006498	lsm7	77	93.814	Amphilophus_citrinellus
ENSCGRG00000014355	-	98	93.137	ENSAOCG00000001077	lsm7	93	93.137	Amphiprion_ocellaris
ENSCGRG00000014355	-	98	94.118	ENSAPEG00000024447	lsm7	93	93.137	Amphiprion_percula
ENSCGRG00000014355	-	97	94.059	ENSAPEG00000000694	lsm7	98	94.059	Amphiprion_percula
ENSCGRG00000014355	-	97	94.059	ENSATEG00000008557	lsm7	98	94.059	Anabas_testudineus
ENSCGRG00000014355	-	97	99.010	ENSANAG00000037196	-	98	99.010	Aotus_nancymaae
ENSCGRG00000014355	-	97	90.099	ENSANAG00000022222	-	98	90.099	Aotus_nancymaae
ENSCGRG00000014355	-	97	93.069	ENSACLG00000021021	lsm7	98	93.069	Astatotilapia_calliptera
ENSCGRG00000014355	-	97	94.059	ENSAMXG00000037622	lsm7	98	94.059	Astyanax_mexicanus
ENSCGRG00000014355	-	97	99.010	ENSBTAG00000004521	LSM7	98	99.010	Bos_taurus
ENSCGRG00000014355	-	99	56.311	WBGene00003081	lsm-7	99	56.311	Caenorhabditis_elegans
ENSCGRG00000014355	-	52	100.000	ENSCJAG00000039713	-	66	100.000	Callithrix_jacchus
ENSCGRG00000014355	-	98	98.039	ENSCAFG00000019409	LSM7	99	98.039	Canis_familiaris
ENSCGRG00000014355	-	98	98.039	ENSCAFG00020018168	LSM7	76	96.117	Canis_lupus_dingo
ENSCGRG00000014355	-	98	99.020	ENSCHIG00000023663	LSM7	99	99.020	Capra_hircus
ENSCGRG00000014355	-	68	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSCGRG00000014355	-	97	99.010	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSCGRG00000014355	-	97	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSCGRG00000014355	-	97	99.010	ENSCATG00000023543	LSM7	98	99.010	Cercocebus_atys
ENSCGRG00000014355	-	97	99.010	ENSCLAG00000011635	LSM7	98	99.010	Chinchilla_lanigera
ENSCGRG00000014355	-	97	99.010	ENSCSAG00000011599	LSM7	98	99.010	Chlorocebus_sabaeus
ENSCGRG00000014355	-	69	93.056	ENSCPBG00000021317	LSM7	76	94.366	Chrysemys_picta_bellii
ENSCGRG00000014355	-	92	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSCGRG00000014355	-	97	99.010	ENSCANG00000035525	LSM7	98	99.010	Colobus_angolensis_palliatus
ENSCGRG00000014355	-	97	100.000	ENSCGRG00001000807	-	98	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000014355	-	87	88.889	ENSCGRG00001016005	-	93	87.912	Cricetulus_griseus_chok1gshd
ENSCGRG00000014355	-	99	92.233	ENSCSEG00000014900	lsm7	85	95.000	Cynoglossus_semilaevis
ENSCGRG00000014355	-	99	93.204	ENSCVAG00000021091	lsm7	94	95.050	Cyprinodon_variegatus
ENSCGRG00000014355	-	97	94.059	ENSDARG00000058328	lsm7	98	94.059	Danio_rerio
ENSCGRG00000014355	-	97	97.030	ENSDORG00000024460	Lsm7	99	97.030	Dipodomys_ordii
ENSCGRG00000014355	-	93	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSCGRG00000014355	-	98	96.078	ENSETEG00000012788	LSM7	100	96.078	Echinops_telfairi
ENSCGRG00000014355	-	98	86.275	ENSEBUG00000016992	lsm7	98	86.275	Eptatretus_burgeri
ENSCGRG00000014355	-	80	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCGRG00000014355	-	97	97.030	ENSECAG00000001440	LSM7	65	97.030	Equus_caballus
ENSCGRG00000014355	-	97	98.020	ENSFCAG00000003445	LSM7	98	98.020	Felis_catus
ENSCGRG00000014355	-	97	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSCGRG00000014355	-	92	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSCGRG00000014355	-	88	94.565	ENSFHEG00000006349	lsm7	92	93.204	Fundulus_heteroclitus
ENSCGRG00000014355	-	98	94.118	ENSGMOG00000013320	lsm7	99	94.118	Gadus_morhua
ENSCGRG00000014355	-	97	95.050	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSCGRG00000014355	-	99	94.175	ENSGACG00000010390	lsm7	100	94.175	Gasterosteus_aculeatus
ENSCGRG00000014355	-	97	99.010	ENSGGOG00000010172	LSM7	98	99.010	Gorilla_gorilla
ENSCGRG00000014355	-	99	93.204	ENSHBUG00000004616	lsm7	98	93.069	Haplochromis_burtoni
ENSCGRG00000014355	-	97	99.010	ENSHGLG00000010587	LSM7	98	99.010	Heterocephalus_glaber_female
ENSCGRG00000014355	-	97	99.010	ENSHGLG00100000852	LSM7	98	99.010	Heterocephalus_glaber_male
ENSCGRG00000014355	-	97	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSCGRG00000014355	-	97	96.040	ENSIPUG00000024724	lsm7	98	96.040	Ictalurus_punctatus
ENSCGRG00000014355	-	98	99.020	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSCGRG00000014355	-	97	99.010	ENSJJAG00000001936	Lsm7	98	99.010	Jaculus_jaculus
ENSCGRG00000014355	-	97	95.050	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSCGRG00000014355	-	97	94.059	ENSLBEG00000005203	lsm7	98	94.059	Labrus_bergylta
ENSCGRG00000014355	-	98	97.059	ENSLACG00000015700	LSM7	99	97.059	Latimeria_chalumnae
ENSCGRG00000014355	-	98	97.059	ENSLOCG00000004356	lsm7	99	97.059	Lepisosteus_oculatus
ENSCGRG00000014355	-	99	98.058	ENSLAFG00000029302	LSM7	100	98.058	Loxodonta_africana
ENSCGRG00000014355	-	97	99.010	ENSMFAG00000044572	LSM7	98	99.010	Macaca_fascicularis
ENSCGRG00000014355	-	97	99.010	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSCGRG00000014355	-	97	99.010	ENSMNEG00000004393	LSM7	98	99.010	Macaca_nemestrina
ENSCGRG00000014355	-	97	99.010	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSCGRG00000014355	-	97	93.069	ENSMAMG00000005410	lsm7	98	93.069	Mastacembelus_armatus
ENSCGRG00000014355	-	97	93.069	ENSMZEG00005028055	lsm7	98	93.069	Maylandia_zebra
ENSCGRG00000014355	-	97	97.030	ENSMGAG00000000750	LSM7	87	97.030	Meleagris_gallopavo
ENSCGRG00000014355	-	98	100.000	ENSMAUG00000009276	Lsm7	99	100.000	Mesocricetus_auratus
ENSCGRG00000014355	-	97	99.010	ENSMICG00000028619	-	98	99.010	Microcebus_murinus
ENSCGRG00000014355	-	97	99.010	ENSMICG00000009988	-	98	99.010	Microcebus_murinus
ENSCGRG00000014355	-	97	100.000	ENSMOCG00000016925	Lsm7	98	100.000	Microtus_ochrogaster
ENSCGRG00000014355	-	97	94.059	ENSMMOG00000019645	lsm7	96	94.059	Mola_mola
ENSCGRG00000014355	-	97	98.020	ENSMODG00000004722	LSM7	98	98.020	Monodelphis_domestica
ENSCGRG00000014355	-	97	93.069	ENSMALG00000014511	lsm7	78	93.069	Monopterus_albus
ENSCGRG00000014355	-	97	98.020	MGP_CAROLIEiJ_G0015607	Lsm7	98	98.020	Mus_caroli
ENSCGRG00000014355	-	97	98.020	ENSMUSG00000035215	Lsm7	98	98.020	Mus_musculus
ENSCGRG00000014355	-	97	98.020	MGP_PahariEiJ_G0031020	Lsm7	98	98.020	Mus_pahari
ENSCGRG00000014355	-	97	98.020	MGP_SPRETEiJ_G0016425	Lsm7	98	98.020	Mus_spretus
ENSCGRG00000014355	-	97	91.089	ENSMLUG00000024002	-	93	91.089	Myotis_lucifugus
ENSCGRG00000014355	-	98	98.039	ENSMLUG00000013097	-	99	98.039	Myotis_lucifugus
ENSCGRG00000014355	-	97	99.010	ENSNGAG00000021637	Lsm7	98	99.010	Nannospalax_galili
ENSCGRG00000014355	-	99	93.204	ENSNBRG00000015770	lsm7	89	93.204	Neolamprologus_brichardi
ENSCGRG00000014355	-	90	93.617	ENSNBRG00000001237	-	81	93.069	Neolamprologus_brichardi
ENSCGRG00000014355	-	97	99.010	ENSNLEG00000002265	LSM7	98	99.010	Nomascus_leucogenys
ENSCGRG00000014355	-	97	92.079	ENSODEG00000018769	-	98	92.079	Octodon_degus
ENSCGRG00000014355	-	97	78.218	ENSODEG00000008190	-	98	78.218	Octodon_degus
ENSCGRG00000014355	-	97	99.010	ENSODEG00000013590	-	98	99.010	Octodon_degus
ENSCGRG00000014355	-	97	93.069	ENSONIG00000001801	lsm7	97	85.714	Oreochromis_niloticus
ENSCGRG00000014355	-	98	94.118	ENSORLG00000023951	lsm7	98	94.059	Oryzias_latipes
ENSCGRG00000014355	-	98	94.118	ENSORLG00020022226	lsm7	98	94.059	Oryzias_latipes_hni
ENSCGRG00000014355	-	98	94.118	ENSORLG00015020044	lsm7	100	87.963	Oryzias_latipes_hsok
ENSCGRG00000014355	-	99	92.233	ENSOMEG00000012806	lsm7	98	94.059	Oryzias_melastigma
ENSCGRG00000014355	-	98	99.020	ENSOGAG00000000144	-	100	99.020	Otolemur_garnettii
ENSCGRG00000014355	-	97	89.109	ENSOGAG00000024373	-	98	89.109	Otolemur_garnettii
ENSCGRG00000014355	-	98	99.020	ENSOARG00000014013	LSM7	99	99.020	Ovis_aries
ENSCGRG00000014355	-	97	99.010	ENSPPAG00000026500	LSM7	98	99.010	Pan_paniscus
ENSCGRG00000014355	-	97	98.020	ENSPPRG00000008624	LSM7	98	98.020	Panthera_pardus
ENSCGRG00000014355	-	97	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSCGRG00000014355	-	97	99.010	ENSPTRG00000010233	LSM7	98	99.010	Pan_troglodytes
ENSCGRG00000014355	-	97	99.010	ENSPANG00000020668	LSM7	98	99.010	Papio_anubis
ENSCGRG00000014355	-	99	94.175	ENSPKIG00000011325	lsm7	98	96.040	Paramormyrops_kingsleyae
ENSCGRG00000014355	-	97	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSCGRG00000014355	-	97	94.059	ENSPMGG00000006498	lsm7	98	94.059	Periophthalmus_magnuspinnatus
ENSCGRG00000014355	-	97	98.020	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSCGRG00000014355	-	98	94.118	ENSPFOG00000012467	lsm7	90	94.118	Poecilia_formosa
ENSCGRG00000014355	-	98	94.118	ENSPLAG00000000252	lsm7	96	91.346	Poecilia_latipinna
ENSCGRG00000014355	-	98	94.118	ENSPMEG00000000587	lsm7	96	91.346	Poecilia_mexicana
ENSCGRG00000014355	-	78	73.171	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSCGRG00000014355	-	70	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSCGRG00000014355	-	97	99.010	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSCGRG00000014355	-	97	93.069	ENSPNYG00000006938	lsm7	98	93.069	Pundamilia_nyererei
ENSCGRG00000014355	-	97	94.059	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSCGRG00000014355	-	97	99.010	ENSRNOG00000019552	Lsm7	98	99.010	Rattus_norvegicus
ENSCGRG00000014355	-	97	99.010	ENSRBIG00000035978	LSM7	98	99.010	Rhinopithecus_bieti
ENSCGRG00000014355	-	97	99.010	ENSRROG00000034044	LSM7	98	99.010	Rhinopithecus_roxellana
ENSCGRG00000014355	-	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSCGRG00000014355	-	97	99.010	ENSSBOG00000034899	LSM7	98	99.010	Saimiri_boliviensis_boliviensis
ENSCGRG00000014355	-	97	94.059	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSCGRG00000014355	-	99	93.204	ENSSMAG00000004195	lsm7	94	93.204	Scophthalmus_maximus
ENSCGRG00000014355	-	97	94.059	ENSSDUG00000001863	lsm7	98	94.059	Seriola_dumerili
ENSCGRG00000014355	-	97	94.059	ENSSLDG00000016339	lsm7	98	94.059	Seriola_lalandi_dorsalis
ENSCGRG00000014355	-	99	93.204	ENSSPAG00000015221	lsm7	98	94.059	Stegastes_partitus
ENSCGRG00000014355	-	97	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSCGRG00000014355	-	97	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSCGRG00000014355	-	97	94.059	ENSTRUG00000022913	lsm7	98	94.059	Takifugu_rubripes
ENSCGRG00000014355	-	97	94.059	ENSTNIG00000015525	lsm7	98	94.059	Tetraodon_nigroviridis
ENSCGRG00000014355	-	67	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCGRG00000014355	-	98	98.039	ENSUAMG00000000912	LSM7	85	98.039	Ursus_americanus
ENSCGRG00000014355	-	99	96.117	ENSUMAG00000006556	LSM7	80	97.059	Ursus_maritimus
ENSCGRG00000014355	-	68	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSCGRG00000014355	-	97	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSCGRG00000014355	-	97	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSCGRG00000014355	-	98	95.098	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus