EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00000015031 (Gene tree)
Gene ID: -
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 14280 bases
Position: chrJH001173.1:357443-371722
Accession: 100752650
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000020659	PPR	PF01535.20	2.4e-16	1	2
ENSCGRP00000020659	PPR	PF01535.20	2.4e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000020956	-	2460	XM_007616898	ENSCGRP00000020659	704 (aa)	XP_007615088	G3I386

Gene Model

Click here to download ENSCGRG00000015031's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000015031's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000015031	Ptcd1	100	73.126	ENSG00000248919	ATP5MF-PTCD1	93	73.126	Homo_sapiens
ENSCGRG00000015031	Ptcd1	100	73.126	ENSG00000106246	PTCD1	99	73.126	Homo_sapiens
ENSCGRG00000015031	Ptcd1	85	45.380	ENSAPOG00000010679	ptcd1	90	45.380	Acanthochromis_polyacanthus
ENSCGRG00000015031	Ptcd1	99	75.813	ENSAMEG00000006224	-	93	75.813	Ailuropoda_melanoleuca
ENSCGRG00000015031	Ptcd1	91	48.382	ENSACIG00000017861	ptcd1	92	47.766	Amphilophus_citrinellus
ENSCGRG00000015031	Ptcd1	90	46.708	ENSAOCG00000020741	-	88	46.468	Amphiprion_ocellaris
ENSCGRG00000015031	Ptcd1	84	46.167	ENSAOCG00000022617	ptcd1	87	45.910	Amphiprion_ocellaris
ENSCGRG00000015031	Ptcd1	90	46.552	ENSAPEG00000022632	ptcd1	88	46.311	Amphiprion_percula
ENSCGRG00000015031	Ptcd1	88	48.237	ENSATEG00000007016	ptcd1	85	48.403	Anabas_testudineus
ENSCGRG00000015031	Ptcd1	84	60.134	ENSAPLG00000006862	-	95	59.446	Anas_platyrhynchos
ENSCGRG00000015031	Ptcd1	98	55.352	ENSACAG00000012871	-	91	55.352	Anolis_carolinensis
ENSCGRG00000015031	Ptcd1	97	72.938	ENSANAG00000035790	-	99	72.938	Aotus_nancymaae
ENSCGRG00000015031	Ptcd1	85	49.505	ENSACLG00000002824	ptcd1	82	49.010	Astatotilapia_calliptera
ENSCGRG00000015031	Ptcd1	85	47.452	ENSAMXG00000037292	ptcd1	88	47.452	Astyanax_mexicanus
ENSCGRG00000015031	Ptcd1	99	72.908	ENSBTAG00000020440	-	86	73.333	Bos_taurus
ENSCGRG00000015031	Ptcd1	100	72.214	ENSCJAG00000015815	-	99	72.214	Callithrix_jacchus
ENSCGRG00000015031	Ptcd1	99	75.143	ENSCAFG00000015055	-	92	75.143	Canis_familiaris
ENSCGRG00000015031	Ptcd1	99	75.143	ENSCAFG00020014480	-	92	75.143	Canis_lupus_dingo
ENSCGRG00000015031	Ptcd1	99	73.333	ENSCHIG00000027000	-	98	73.759	Capra_hircus
ENSCGRG00000015031	Ptcd1	100	75.176	ENSTSYG00000029495	-	99	75.317	Carlito_syrichta
ENSCGRG00000015031	Ptcd1	93	75.114	ENSCAPG00000014660	-	100	75.114	Cavia_aperea
ENSCGRG00000015031	Ptcd1	100	74.189	ENSCPOG00000001780	-	99	74.189	Cavia_porcellus
ENSCGRG00000015031	Ptcd1	99	72.136	ENSCCAG00000034025	-	99	72.136	Cebus_capucinus
ENSCGRG00000015031	Ptcd1	99	73.932	ENSCATG00000040859	-	99	73.932	Cercocebus_atys
ENSCGRG00000015031	Ptcd1	98	75.718	ENSCLAG00000006354	-	99	75.177	Chinchilla_lanigera
ENSCGRG00000015031	Ptcd1	91	73.920	ENSCSAG00000017794	-	95	73.920	Chlorocebus_sabaeus
ENSCGRG00000015031	Ptcd1	87	58.642	ENSCPBG00000020866	-	87	58.308	Chrysemys_picta_bellii
ENSCGRG00000015031	Ptcd1	82	30.872	ENSCING00000007717	-	98	31.208	Ciona_intestinalis
ENSCGRG00000015031	Ptcd1	99	72.818	ENSCANG00000023441	-	98	72.818	Colobus_angolensis_palliatus
ENSCGRG00000015031	Ptcd1	100	99.006	ENSCGRG00001023686	Ptcd1	99	99.006	Cricetulus_griseus_chok1gshd
ENSCGRG00000015031	Ptcd1	87	46.154	ENSCSEG00000002378	ptcd1	85	46.795	Cynoglossus_semilaevis
ENSCGRG00000015031	Ptcd1	85	47.098	ENSCVAG00000003621	ptcd1	88	46.932	Cyprinodon_variegatus
ENSCGRG00000015031	Ptcd1	88	46.388	ENSCVAG00000015826	ptcd1	86	46.228	Cyprinodon_variegatus
ENSCGRG00000015031	Ptcd1	86	49.273	ENSDARG00000076176	ptcd1	88	49.111	Danio_rerio
ENSCGRG00000015031	Ptcd1	100	71.610	ENSDNOG00000009957	-	99	72.034	Dasypus_novemcinctus
ENSCGRG00000015031	Ptcd1	99	73.969	ENSDORG00000000740	Ptcd1	99	74.253	Dipodomys_ordii
ENSCGRG00000015031	Ptcd1	90	39.856	ENSEBUG00000014515	ptcd1	97	41.696	Eptatretus_burgeri
ENSCGRG00000015031	Ptcd1	100	76.023	ENSEASG00005002480	-	99	76.023	Equus_asinus_asinus
ENSCGRG00000015031	Ptcd1	100	76.305	ENSECAG00000016617	-	99	76.305	Equus_caballus
ENSCGRG00000015031	Ptcd1	84	46.955	ENSELUG00000016517	ptcd1	83	46.955	Esox_lucius
ENSCGRG00000015031	Ptcd1	100	75.740	ENSFCAG00000015069	-	99	75.740	Felis_catus
ENSCGRG00000015031	Ptcd1	86	60.413	ENSFALG00000013803	-	92	58.174	Ficedula_albicollis
ENSCGRG00000015031	Ptcd1	100	73.833	ENSFDAG00000006393	-	99	73.833	Fukomys_damarensis
ENSCGRG00000015031	Ptcd1	75	47.290	ENSFHEG00000012491	ptcd1	89	47.290	Fundulus_heteroclitus
ENSCGRG00000015031	Ptcd1	83	46.404	ENSGMOG00000007639	ptcd1	93	46.747	Gadus_morhua
ENSCGRG00000015031	Ptcd1	87	57.300	ENSGALG00000004711	-	96	54.610	Gallus_gallus
ENSCGRG00000015031	Ptcd1	83	48.316	ENSGAFG00000013175	ptcd1	82	47.811	Gambusia_affinis
ENSCGRG00000015031	Ptcd1	83	49.161	ENSGACG00000016607	ptcd1	89	48.990	Gasterosteus_aculeatus
ENSCGRG00000015031	Ptcd1	81	60.348	ENSGAGG00000021832	-	85	60.522	Gopherus_agassizii
ENSCGRG00000015031	Ptcd1	99	73.466	ENSGGOG00000015123	-	99	73.466	Gorilla_gorilla
ENSCGRG00000015031	Ptcd1	84	48.926	ENSHBUG00000018275	ptcd1	82	48.430	Haplochromis_burtoni
ENSCGRG00000015031	Ptcd1	100	75.565	ENSHGLG00000017621	-	99	75.565	Heterocephalus_glaber_female
ENSCGRG00000015031	Ptcd1	100	75.565	ENSHGLG00100007218	-	99	75.565	Heterocephalus_glaber_male
ENSCGRG00000015031	Ptcd1	83	47.341	ENSHCOG00000010784	ptcd1	82	47.260	Hippocampus_comes
ENSCGRG00000015031	Ptcd1	99	76.496	ENSSTOG00000001682	-	99	76.496	Ictidomys_tridecemlineatus
ENSCGRG00000015031	Ptcd1	100	77.119	ENSJJAG00000000319	Ptcd1	99	76.836	Jaculus_jaculus
ENSCGRG00000015031	Ptcd1	89	47.077	ENSKMAG00000008708	ptcd1	87	47.077	Kryptolebias_marmoratus
ENSCGRG00000015031	Ptcd1	88	47.484	ENSLBEG00000008061	ptcd1	86	47.484	Labrus_bergylta
ENSCGRG00000015031	Ptcd1	92	55.622	ENSLACG00000011172	ptcd1	91	55.622	Latimeria_chalumnae
ENSCGRG00000015031	Ptcd1	98	50.759	ENSLOCG00000004833	ptcd1	97	52.050	Lepisosteus_oculatus
ENSCGRG00000015031	Ptcd1	99	70.522	ENSLAFG00000002588	-	99	70.522	Loxodonta_africana
ENSCGRG00000015031	Ptcd1	99	73.932	ENSMFAG00000041324	-	99	73.932	Macaca_fascicularis
ENSCGRG00000015031	Ptcd1	99	73.789	ENSMMUG00000030408	-	99	73.789	Macaca_mulatta
ENSCGRG00000015031	Ptcd1	99	73.789	ENSMNEG00000043786	-	99	73.789	Macaca_nemestrina
ENSCGRG00000015031	Ptcd1	99	54.843	ENSMLEG00000031179	-	99	56.838	Mandrillus_leucophaeus
ENSCGRG00000015031	Ptcd1	91	46.995	ENSMAMG00000007623	ptcd1	88	46.995	Mastacembelus_armatus
ENSCGRG00000015031	Ptcd1	85	49.505	ENSMZEG00005012722	ptcd1	82	49.010	Maylandia_zebra
ENSCGRG00000015031	Ptcd1	87	59.105	ENSMGAG00000004211	-	81	59.105	Meleagris_gallopavo
ENSCGRG00000015031	Ptcd1	99	74.286	ENSMICG00000017428	-	99	74.893	Microcebus_murinus
ENSCGRG00000015031	Ptcd1	86	47.377	ENSMMOG00000020243	ptcd1	91	47.213	Mola_mola
ENSCGRG00000015031	Ptcd1	98	59.778	ENSMODG00000001350	-	98	59.778	Monodelphis_domestica
ENSCGRG00000015031	Ptcd1	84	48.918	ENSMALG00000018442	ptcd1	81	48.918	Monopterus_albus
ENSCGRG00000015031	Ptcd1	99	82.955	MGP_CAROLIEiJ_G0028011	Ptcd1	99	82.955	Mus_caroli
ENSCGRG00000015031	Ptcd1	99	82.386	ENSMUSG00000029624	Ptcd1	99	82.386	Mus_musculus
ENSCGRG00000015031	Ptcd1	100	82.979	MGP_PahariEiJ_G0024580	Ptcd1	99	82.979	Mus_pahari
ENSCGRG00000015031	Ptcd1	99	82.955	MGP_SPRETEiJ_G0029012	Ptcd1	99	82.955	Mus_spretus
ENSCGRG00000015031	Ptcd1	100	74.859	ENSMPUG00000016518	-	99	75.282	Mustela_putorius_furo
ENSCGRG00000015031	Ptcd1	99	76.136	ENSMLUG00000010994	-	93	76.420	Myotis_lucifugus
ENSCGRG00000015031	Ptcd1	86	48.947	ENSNBRG00000010079	ptcd1	87	48.460	Neolamprologus_brichardi
ENSCGRG00000015031	Ptcd1	81	74.341	ENSNLEG00000011060	-	94	74.341	Nomascus_leucogenys
ENSCGRG00000015031	Ptcd1	98	60.345	ENSMEUG00000006930	-	99	60.345	Notamacropus_eugenii
ENSCGRG00000015031	Ptcd1	89	73.176	ENSOPRG00000013647	-	88	73.176	Ochotona_princeps
ENSCGRG00000015031	Ptcd1	84	48.013	ENSONIG00000003168	ptcd1	97	47.517	Oreochromis_niloticus
ENSCGRG00000015031	Ptcd1	80	56.098	ENSOANG00000007728	-	74	55.923	Ornithorhynchus_anatinus
ENSCGRG00000015031	Ptcd1	99	70.899	ENSOCUG00000010584	-	97	70.899	Oryctolagus_cuniculus
ENSCGRG00000015031	Ptcd1	86	48.768	ENSORLG00000009275	ptcd1	86	48.525	Oryzias_latipes
ENSCGRG00000015031	Ptcd1	86	48.604	ENSORLG00020000988	ptcd1	87	48.604	Oryzias_latipes_hni
ENSCGRG00000015031	Ptcd1	86	48.276	ENSORLG00015010557	ptcd1	87	48.033	Oryzias_latipes_hsok
ENSCGRG00000015031	Ptcd1	86	48.852	ENSOMEG00000020627	ptcd1	88	48.440	Oryzias_melastigma
ENSCGRG00000015031	Ptcd1	99	72.000	ENSOGAG00000010877	-	99	72.000	Otolemur_garnettii
ENSCGRG00000015031	Ptcd1	99	68.555	ENSOARG00000018676	-	99	68.980	Ovis_aries
ENSCGRG00000015031	Ptcd1	100	72.136	ENSPPAG00000036024	-	99	72.277	Pan_paniscus
ENSCGRG00000015031	Ptcd1	100	76.023	ENSPPRG00000003478	-	99	76.023	Panthera_pardus
ENSCGRG00000015031	Ptcd1	100	71.994	ENSPTRG00000019452	-	99	72.136	Pan_troglodytes
ENSCGRG00000015031	Ptcd1	99	73.932	ENSPANG00000016730	-	99	73.932	Papio_anubis
ENSCGRG00000015031	Ptcd1	92	50.675	ENSPKIG00000014215	ptcd1	96	50.675	Paramormyrops_kingsleyae
ENSCGRG00000015031	Ptcd1	84	58.794	ENSPSIG00000011184	-	100	59.030	Pelodiscus_sinensis
ENSCGRG00000015031	Ptcd1	73	41.874	ENSPMAG00000009667	ptcd1	100	41.874	Petromyzon_marinus
ENSCGRG00000015031	Ptcd1	99	58.943	ENSPCIG00000024778	-	99	58.943	Phascolarctos_cinereus
ENSCGRG00000015031	Ptcd1	83	47.731	ENSPFOG00000004458	ptcd1	83	47.525	Poecilia_formosa
ENSCGRG00000015031	Ptcd1	83	48.403	ENSPLAG00000011051	ptcd1	84	47.690	Poecilia_latipinna
ENSCGRG00000015031	Ptcd1	83	47.754	ENSPMEG00000020547	ptcd1	83	47.549	Poecilia_mexicana
ENSCGRG00000015031	Ptcd1	82	48.547	ENSPREG00000000059	ptcd1	83	48.142	Poecilia_reticulata
ENSCGRG00000015031	Ptcd1	94	74.208	ENSPPYG00000017377	-	99	74.208	Pongo_abelii
ENSCGRG00000015031	Ptcd1	80	72.143	ENSPCAG00000001852	-	88	72.143	Procavia_capensis
ENSCGRG00000015031	Ptcd1	99	74.501	ENSPCOG00000018596	-	99	74.964	Propithecus_coquereli
ENSCGRG00000015031	Ptcd1	67	85.000	ENSPVAG00000007529	-	72	85.000	Pteropus_vampyrus
ENSCGRG00000015031	Ptcd1	84	49.670	ENSPNYG00000019993	ptcd1	82	49.175	Pundamilia_nyererei
ENSCGRG00000015031	Ptcd1	86	49.522	ENSPNAG00000014931	ptcd1	90	48.762	Pygocentrus_nattereri
ENSCGRG00000015031	Ptcd1	99	80.939	ENSRNOG00000000987	Ptcd1	99	80.939	Rattus_norvegicus
ENSCGRG00000015031	Ptcd1	99	73.181	ENSRBIG00000043393	-	99	73.181	Rhinopithecus_bieti
ENSCGRG00000015031	Ptcd1	99	73.039	ENSRROG00000036420	-	99	73.039	Rhinopithecus_roxellana
ENSCGRG00000015031	Ptcd1	100	72.458	ENSSBOG00000024114	-	99	72.458	Saimiri_boliviensis_boliviensis
ENSCGRG00000015031	Ptcd1	99	56.054	ENSSHAG00000011376	-	96	61.695	Sarcophilus_harrisii
ENSCGRG00000015031	Ptcd1	86	52.809	ENSSFOG00015007909	ptcd1	83	53.291	Scleropages_formosus
ENSCGRG00000015031	Ptcd1	86	46.365	ENSSMAG00000000218	ptcd1	94	46.365	Scophthalmus_maximus
ENSCGRG00000015031	Ptcd1	95	46.165	ENSSDUG00000015671	ptcd1	94	46.165	Seriola_dumerili
ENSCGRG00000015031	Ptcd1	94	45.668	ENSSLDG00000014261	ptcd1	94	45.374	Seriola_lalandi_dorsalis
ENSCGRG00000015031	Ptcd1	92	55.539	ENSSPUG00000003540	-	90	55.869	Sphenodon_punctatus
ENSCGRG00000015031	Ptcd1	91	46.933	ENSSPAG00000011049	ptcd1	88	46.718	Stegastes_partitus
ENSCGRG00000015031	Ptcd1	94	75.000	ENSSSCG00000007622	-	99	75.000	Sus_scrofa
ENSCGRG00000015031	Ptcd1	87	60.065	ENSTGUG00000007563	-	100	60.227	Taeniopygia_guttata
ENSCGRG00000015031	Ptcd1	83	48.639	ENSTRUG00000013471	ptcd1	79	48.469	Takifugu_rubripes
ENSCGRG00000015031	Ptcd1	83	48.387	ENSTNIG00000008271	ptcd1	83	48.387	Tetraodon_nigroviridis
ENSCGRG00000015031	Ptcd1	100	72.612	ENSTBEG00000011021	-	99	72.612	Tupaia_belangeri
ENSCGRG00000015031	Ptcd1	99	72.766	ENSTTRG00000003006	-	99	72.766	Tursiops_truncatus
ENSCGRG00000015031	Ptcd1	99	76.521	ENSUAMG00000008049	-	99	76.521	Ursus_americanus
ENSCGRG00000015031	Ptcd1	99	76.143	ENSVVUG00000008836	-	99	76.143	Vulpes_vulpes
ENSCGRG00000015031	Ptcd1	84	54.090	ENSXETG00000009891	ptcd1	88	53.355	Xenopus_tropicalis
ENSCGRG00000015031	Ptcd1	83	47.973	ENSXMAG00000015540	ptcd1	86	46.365	Xiphophorus_maculatus