EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000015301 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 72208 bases
Position: chrJH000133.1:817293-889500
Accession: 100750368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000021050	ResIII	PF04851.15	1.6e-11	1	1
ENSCGRP00000021051	ResIII	PF04851.15	1.6e-11	1	1
ENSCGRP00000021051	DEAD	PF00270.29	4.5e-07	1	1
ENSCGRP00000021050	DEAD	PF00270.29	4.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000021350	-	3015	-	ENSCGRP00000021051	1004 (aa)	-	-
ENSCGRT00000021349	-	3036	XM_007636283	ENSCGRP00000021050	1011 (aa)	XP_007634473	-

Gene Model

Click here to download ENSCGRG00000015301's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000015301's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000015301	Smarca1	61	38.249	ENSCGRG00000012850	Chd9	57	43.086
ENSCGRG00000015301	Smarca1	96	84.599	ENSCGRG00000001417	Smarca5	97	84.340
ENSCGRG00000015301	Smarca1	56	42.451	ENSCGRG00000007554	Chd1l	64	42.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000015301	Smarca1	98	96.382	ENSG00000102038	SMARCA1	95	95.908	Homo_sapiens
ENSCGRG00000015301	Smarca1	94	83.227	ENSAPOG00000016035	smarca5	96	84.270	Acanthochromis_polyacanthus
ENSCGRG00000015301	Smarca1	98	95.142	ENSAMEG00000015218	SMARCA1	93	94.673	Ailuropoda_melanoleuca
ENSCGRG00000015301	Smarca1	86	84.375	ENSACIG00000016982	smarca5	97	84.289	Amphilophus_citrinellus
ENSCGRG00000015301	Smarca1	94	83.227	ENSAOCG00000015578	smarca5	95	81.256	Amphiprion_ocellaris
ENSCGRG00000015301	Smarca1	94	83.227	ENSAPEG00000011117	smarca5	97	84.223	Amphiprion_percula
ENSCGRG00000015301	Smarca1	95	83.019	ENSATEG00000012894	smarca5	95	81.358	Anabas_testudineus
ENSCGRG00000015301	Smarca1	94	91.552	ENSAPLG00000013149	SMARCA1	97	91.268	Anas_platyrhynchos
ENSCGRG00000015301	Smarca1	98	90.316	ENSACAG00000011376	SMARCA1	93	90.224	Anolis_carolinensis
ENSCGRG00000015301	Smarca1	98	90.992	ENSANAG00000023098	SMARCA1	93	90.200	Aotus_nancymaae
ENSCGRG00000015301	Smarca1	97	81.687	ENSACLG00000025356	smarca5	95	81.662	Astatotilapia_calliptera
ENSCGRG00000015301	Smarca1	94	83.741	ENSAMXG00000005709	smarca5	92	83.577	Astyanax_mexicanus
ENSCGRG00000015301	Smarca1	91	87.691	ENSAMXG00000011227	smarca1	99	88.462	Astyanax_mexicanus
ENSCGRG00000015301	Smarca1	98	95.956	ENSBTAG00000002292	SMARCA1	95	95.482	Bos_taurus
ENSCGRG00000015301	Smarca1	96	62.933	WBGene00002169	isw-1	94	64.025	Caenorhabditis_elegans
ENSCGRG00000015301	Smarca1	98	96.053	ENSCJAG00000002868	SMARCA1	93	95.578	Callithrix_jacchus
ENSCGRG00000015301	Smarca1	98	86.016	ENSCAFG00000018673	SMARCA1	97	86.336	Canis_familiaris
ENSCGRG00000015301	Smarca1	98	95.821	ENSCAFG00020001751	SMARCA1	93	95.344	Canis_lupus_dingo
ENSCGRG00000015301	Smarca1	98	96.080	ENSCHIG00000009837	SMARCA1	95	95.609	Capra_hircus
ENSCGRG00000015301	Smarca1	99	95.960	ENSTSYG00000004240	SMARCA1	99	95.960	Carlito_syrichta
ENSCGRG00000015301	Smarca1	98	95.569	ENSCPOG00000013601	SMARCA1	96	94.538	Cavia_porcellus
ENSCGRG00000015301	Smarca1	98	93.117	ENSCCAG00000030817	SMARCA1	93	92.663	Cebus_capucinus
ENSCGRG00000015301	Smarca1	98	96.356	ENSCATG00000015921	SMARCA1	95	95.578	Cercocebus_atys
ENSCGRG00000015301	Smarca1	98	95.377	ENSCLAG00000002171	SMARCA1	95	94.910	Chinchilla_lanigera
ENSCGRG00000015301	Smarca1	98	96.024	ENSCSAG00000008460	SMARCA1	93	95.547	Chlorocebus_sabaeus
ENSCGRG00000015301	Smarca1	98	90.835	ENSCPBG00000001146	SMARCA1	92	90.835	Chrysemys_picta_bellii
ENSCGRG00000015301	Smarca1	95	72.878	ENSCING00000004110	swi/snf	95	72.878	Ciona_intestinalis
ENSCGRG00000015301	Smarca1	98	71.400	ENSCSAVG00000004620	-	100	73.051	Ciona_savignyi
ENSCGRG00000015301	Smarca1	98	96.255	ENSCANG00000007183	SMARCA1	93	95.779	Colobus_angolensis_palliatus
ENSCGRG00000015301	Smarca1	99	99.301	ENSCGRG00001010776	Smarca1	95	99.301	Cricetulus_griseus_chok1gshd
ENSCGRG00000015301	Smarca1	96	82.812	ENSCSEG00000000328	smarca5	93	82.389	Cynoglossus_semilaevis
ENSCGRG00000015301	Smarca1	94	82.806	ENSCVAG00000008668	smarca5	97	83.879	Cyprinodon_variegatus
ENSCGRG00000015301	Smarca1	97	84.585	ENSDARG00000012776	smarca1	96	84.585	Danio_rerio
ENSCGRG00000015301	Smarca1	95	82.513	ENSDARG00000052348	smarca5	93	82.371	Danio_rerio
ENSCGRG00000015301	Smarca1	99	93.933	ENSDNOG00000004315	SMARCA1	95	93.933	Dasypus_novemcinctus
ENSCGRG00000015301	Smarca1	99	95.753	ENSDORG00000009270	Smarca1	95	95.657	Dipodomys_ordii
ENSCGRG00000015301	Smarca1	95	72.708	FBgn0011604	Iswi	94	72.848	Drosophila_melanogaster
ENSCGRG00000015301	Smarca1	82	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSCGRG00000015301	Smarca1	95	79.916	ENSEBUG00000001239	smarca5	96	79.286	Eptatretus_burgeri
ENSCGRG00000015301	Smarca1	97	91.709	ENSEASG00005008218	SMARCA1	97	92.092	Equus_asinus_asinus
ENSCGRG00000015301	Smarca1	98	95.719	ENSECAG00000012106	SMARCA1	93	95.243	Equus_caballus
ENSCGRG00000015301	Smarca1	81	96.026	ENSEEUG00000014927	SMARCA1	84	96.026	Erinaceus_europaeus
ENSCGRG00000015301	Smarca1	96	86.186	ENSELUG00000010515	smarca1	96	85.830	Esox_lucius
ENSCGRG00000015301	Smarca1	98	96.158	ENSFCAG00000018496	SMARCA1	93	96.061	Felis_catus
ENSCGRG00000015301	Smarca1	91	91.457	ENSFALG00000000209	SMARCA1	98	91.557	Ficedula_albicollis
ENSCGRG00000015301	Smarca1	99	95.783	ENSFDAG00000009818	SMARCA1	98	95.783	Fukomys_damarensis
ENSCGRG00000015301	Smarca1	94	83.228	ENSFHEG00000007687	smarca5	91	84.678	Fundulus_heteroclitus
ENSCGRG00000015301	Smarca1	96	90.580	ENSGALG00000008431	SMARCA1	97	90.142	Gallus_gallus
ENSCGRG00000015301	Smarca1	97	81.584	ENSGAFG00000017731	smarca5	95	81.459	Gambusia_affinis
ENSCGRG00000015301	Smarca1	94	92.089	ENSGAGG00000023575	SMARCA1	98	92.089	Gopherus_agassizii
ENSCGRG00000015301	Smarca1	74	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCGRG00000015301	Smarca1	98	94.975	ENSHGLG00000003080	SMARCA1	95	94.511	Heterocephalus_glaber_female
ENSCGRG00000015301	Smarca1	98	94.472	ENSHGLG00100001102	SMARCA1	99	94.472	Heterocephalus_glaber_male
ENSCGRG00000015301	Smarca1	94	83.369	ENSHCOG00000005458	smarca5	95	81.662	Hippocampus_comes
ENSCGRG00000015301	Smarca1	98	85.351	ENSIPUG00000016905	Smarca1	98	86.425	Ictalurus_punctatus
ENSCGRG00000015301	Smarca1	97	81.668	ENSIPUG00000005229	SMARCA5	96	81.440	Ictalurus_punctatus
ENSCGRG00000015301	Smarca1	99	95.110	ENSSTOG00000014524	SMARCA1	95	95.110	Ictidomys_tridecemlineatus
ENSCGRG00000015301	Smarca1	99	95.551	ENSJJAG00000002593	Smarca1	95	95.455	Jaculus_jaculus
ENSCGRG00000015301	Smarca1	94	83.263	ENSKMAG00000003777	smarca5	95	81.560	Kryptolebias_marmoratus
ENSCGRG00000015301	Smarca1	95	82.322	ENSLBEG00000018112	smarca5	93	82.286	Labrus_bergylta
ENSCGRG00000015301	Smarca1	93	82.372	ENSLBEG00000013295	SMARCA1	100	83.818	Labrus_bergylta
ENSCGRG00000015301	Smarca1	98	88.235	ENSLACG00000016697	SMARCA1	96	88.235	Latimeria_chalumnae
ENSCGRG00000015301	Smarca1	97	87.269	ENSLOCG00000014591	smarca1	96	87.159	Lepisosteus_oculatus
ENSCGRG00000015301	Smarca1	99	94.551	ENSLAFG00000000896	SMARCA1	100	94.551	Loxodonta_africana
ENSCGRG00000015301	Smarca1	99	96.162	ENSMFAG00000002117	SMARCA1	98	96.162	Macaca_fascicularis
ENSCGRG00000015301	Smarca1	98	96.356	ENSMMUG00000008818	SMARCA1	99	95.549	Macaca_mulatta
ENSCGRG00000015301	Smarca1	99	96.162	ENSMNEG00000041768	SMARCA1	98	96.162	Macaca_nemestrina
ENSCGRG00000015301	Smarca1	98	96.255	ENSMLEG00000043198	SMARCA1	93	95.779	Mandrillus_leucophaeus
ENSCGRG00000015301	Smarca1	94	83.017	ENSMAMG00000014294	smarca5	93	82.389	Mastacembelus_armatus
ENSCGRG00000015301	Smarca1	97	81.687	ENSMZEG00005009369	smarca5	95	81.662	Maylandia_zebra
ENSCGRG00000015301	Smarca1	96	89.928	ENSMGAG00000007042	SMARCA1	97	89.676	Meleagris_gallopavo
ENSCGRG00000015301	Smarca1	99	97.387	ENSMAUG00000008133	Smarca1	95	97.387	Mesocricetus_auratus
ENSCGRG00000015301	Smarca1	98	96.057	ENSMICG00000015768	SMARCA1	93	95.960	Microcebus_murinus
ENSCGRG00000015301	Smarca1	99	97.006	ENSMOCG00000009464	Smarca1	95	97.006	Microtus_ochrogaster
ENSCGRG00000015301	Smarca1	95	80.669	ENSMMOG00000005547	smarca5	97	80.658	Mola_mola
ENSCGRG00000015301	Smarca1	97	90.402	ENSMODG00000013187	-	94	89.442	Monodelphis_domestica
ENSCGRG00000015301	Smarca1	96	81.753	ENSMALG00000002081	smarca5	97	80.957	Monopterus_albus
ENSCGRG00000015301	Smarca1	99	97.172	MGP_CAROLIEiJ_G0033034	Smarca1	95	97.172	Mus_caroli
ENSCGRG00000015301	Smarca1	99	97.172	ENSMUSG00000031099	Smarca1	95	97.172	Mus_musculus
ENSCGRG00000015301	Smarca1	99	97.071	MGP_PahariEiJ_G0031579	Smarca1	95	97.071	Mus_pahari
ENSCGRG00000015301	Smarca1	99	97.273	MGP_SPRETEiJ_G0034192	Smarca1	95	97.273	Mus_spretus
ENSCGRG00000015301	Smarca1	98	96.154	ENSMPUG00000017423	SMARCA1	88	95.678	Mustela_putorius_furo
ENSCGRG00000015301	Smarca1	98	93.454	ENSMLUG00000029614	SMARCA1	93	93.454	Myotis_lucifugus
ENSCGRG00000015301	Smarca1	99	96.806	ENSNGAG00000006492	Smarca1	95	96.806	Nannospalax_galili
ENSCGRG00000015301	Smarca1	94	83.333	ENSNBRG00000004463	smarca5	97	82.837	Neolamprologus_brichardi
ENSCGRG00000015301	Smarca1	99	94.306	ENSNLEG00000015179	SMARCA1	99	94.306	Nomascus_leucogenys
ENSCGRG00000015301	Smarca1	94	80.462	ENSMEUG00000008819	SMARCA1	100	80.462	Notamacropus_eugenii
ENSCGRG00000015301	Smarca1	99	95.080	ENSODEG00000012163	SMARCA1	95	94.985	Octodon_degus
ENSCGRG00000015301	Smarca1	97	81.790	ENSONIG00000009993	smarca5	95	81.763	Oreochromis_niloticus
ENSCGRG00000015301	Smarca1	95	92.202	ENSOANG00000002862	SMARCA1	98	92.202	Ornithorhynchus_anatinus
ENSCGRG00000015301	Smarca1	98	94.597	ENSOCUG00000001047	SMARCA1	93	94.130	Oryctolagus_cuniculus
ENSCGRG00000015301	Smarca1	94	83.157	ENSORLG00000021998	smarca5	94	81.459	Oryzias_latipes
ENSCGRG00000015301	Smarca1	94	83.263	ENSORLG00020017679	smarca5	94	81.560	Oryzias_latipes_hni
ENSCGRG00000015301	Smarca1	94	83.157	ENSORLG00015017210	smarca5	95	81.358	Oryzias_latipes_hsok
ENSCGRG00000015301	Smarca1	94	83.051	ENSOMEG00000000086	smarca5	95	81.256	Oryzias_melastigma
ENSCGRG00000015301	Smarca1	98	95.779	ENSOGAG00000004399	SMARCA1	95	95.309	Otolemur_garnettii
ENSCGRG00000015301	Smarca1	98	94.848	ENSOARG00000014638	SMARCA1	98	96.050	Ovis_aries
ENSCGRG00000015301	Smarca1	98	96.356	ENSPPAG00000034647	SMARCA1	93	95.879	Pan_paniscus
ENSCGRG00000015301	Smarca1	98	96.158	ENSPPRG00000008929	SMARCA1	93	96.061	Panthera_pardus
ENSCGRG00000015301	Smarca1	98	94.266	ENSPTIG00000000915	SMARCA1	96	94.266	Panthera_tigris_altaica
ENSCGRG00000015301	Smarca1	98	96.356	ENSPTRG00000049876	SMARCA1	95	95.578	Pan_troglodytes
ENSCGRG00000015301	Smarca1	98	96.356	ENSPANG00000003871	SMARCA1	93	95.879	Papio_anubis
ENSCGRG00000015301	Smarca1	95	86.884	ENSPKIG00000013411	smarca1	96	86.884	Paramormyrops_kingsleyae
ENSCGRG00000015301	Smarca1	98	90.293	ENSPSIG00000010101	SMARCA1	98	91.772	Pelodiscus_sinensis
ENSCGRG00000015301	Smarca1	99	97.588	ENSPEMG00000017503	Smarca1	95	97.588	Peromyscus_maniculatus_bairdii
ENSCGRG00000015301	Smarca1	98	90.254	ENSPCIG00000015460	SMARCA1	97	90.071	Phascolarctos_cinereus
ENSCGRG00000015301	Smarca1	94	83.051	ENSPFOG00000007649	smarca5	95	81.256	Poecilia_formosa
ENSCGRG00000015301	Smarca1	94	83.051	ENSPLAG00000003363	smarca5	95	81.256	Poecilia_latipinna
ENSCGRG00000015301	Smarca1	94	83.157	ENSPMEG00000019849	smarca5	95	81.358	Poecilia_mexicana
ENSCGRG00000015301	Smarca1	94	83.157	ENSPREG00000023250	smarca5	95	81.358	Poecilia_reticulata
ENSCGRG00000015301	Smarca1	98	93.068	ENSPPYG00000020703	SMARCA1	93	92.611	Pongo_abelii
ENSCGRG00000015301	Smarca1	82	90.909	ENSPCOG00000020722	SMARCA1	94	91.163	Propithecus_coquereli
ENSCGRG00000015301	Smarca1	93	95.026	ENSPVAG00000003805	SMARCA1	90	95.026	Pteropus_vampyrus
ENSCGRG00000015301	Smarca1	58	82.740	ENSPNYG00000012299	smarca5	92	81.600	Pundamilia_nyererei
ENSCGRG00000015301	Smarca1	98	96.640	ENSRNOG00000003762	Smarca1	92	96.640	Rattus_norvegicus
ENSCGRG00000015301	Smarca1	98	96.255	ENSRROG00000034167	SMARCA1	93	95.779	Rhinopithecus_roxellana
ENSCGRG00000015301	Smarca1	98	96.158	ENSSBOG00000020641	SMARCA1	98	96.466	Saimiri_boliviensis_boliviensis
ENSCGRG00000015301	Smarca1	95	85.924	ENSSHAG00000013518	SMARCA1	97	85.924	Sarcophilus_harrisii
ENSCGRG00000015301	Smarca1	96	82.273	ENSSFOG00015016794	smarca5	98	83.527	Scleropages_formosus
ENSCGRG00000015301	Smarca1	96	87.344	ENSSFOG00015009043	smarca1	96	87.067	Scleropages_formosus
ENSCGRG00000015301	Smarca1	95	82.458	ENSSMAG00000004801	smarca5	93	82.420	Scophthalmus_maximus
ENSCGRG00000015301	Smarca1	94	82.595	ENSSDUG00000020690	smarca5	95	81.282	Seriola_dumerili
ENSCGRG00000015301	Smarca1	94	82.595	ENSSLDG00000025190	smarca5	95	81.282	Seriola_lalandi_dorsalis
ENSCGRG00000015301	Smarca1	91	89.674	ENSSARG00000000842	SMARCA1	92	89.674	Sorex_araneus
ENSCGRG00000015301	Smarca1	99	89.293	ENSSPUG00000000590	SMARCA1	95	89.293	Sphenodon_punctatus
ENSCGRG00000015301	Smarca1	97	81.379	ENSSPAG00000002894	smarca5	94	84.270	Stegastes_partitus
ENSCGRG00000015301	Smarca1	98	95.418	ENSSSCG00000012649	SMARCA1	95	94.944	Sus_scrofa
ENSCGRG00000015301	Smarca1	94	91.341	ENSTGUG00000003899	-	97	91.060	Taeniopygia_guttata
ENSCGRG00000015301	Smarca1	94	82.911	ENSTRUG00000014094	smarca5	95	81.092	Takifugu_rubripes
ENSCGRG00000015301	Smarca1	94	82.378	ENSTNIG00000017717	smarca5	94	80.648	Tetraodon_nigroviridis
ENSCGRG00000015301	Smarca1	99	89.458	ENSTBEG00000014973	SMARCA1	100	89.458	Tupaia_belangeri
ENSCGRG00000015301	Smarca1	98	93.232	ENSTTRG00000006168	SMARCA1	100	93.232	Tursiops_truncatus
ENSCGRG00000015301	Smarca1	98	95.413	ENSUAMG00000020201	SMARCA1	93	94.939	Ursus_americanus
ENSCGRG00000015301	Smarca1	99	91.313	ENSUMAG00000004073	SMARCA1	99	95.465	Ursus_maritimus
ENSCGRG00000015301	Smarca1	77	97.771	ENSVPAG00000010492	-	80	97.771	Vicugna_pacos
ENSCGRG00000015301	Smarca1	98	95.723	ENSVVUG00000008878	SMARCA1	100	96.054	Vulpes_vulpes
ENSCGRG00000015301	Smarca1	96	88.266	ENSXETG00000001526	smarca1	98	88.127	Xenopus_tropicalis
ENSCGRG00000015301	Smarca1	97	81.481	ENSXCOG00000011170	smarca5	97	81.358	Xiphophorus_couchianus
ENSCGRG00000015301	Smarca1	97	81.481	ENSXMAG00000009678	smarca5	98	83.333	Xiphophorus_maculatus