EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000016472 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 29658 bases
Position: chrJH000086.1:2114605-2144262
Accession: 100758820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000022742	ResIII	PF04851.15	1.1e-24	1	2
ENSCGRP00000022742	ResIII	PF04851.15	1.1e-24	2	2
ENSCGRP00000022742	DEAD	PF00270.29	3.7e-50	1	2
ENSCGRP00000022742	DEAD	PF00270.29	3.7e-50	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000023058	-	6402	XM_007639842	ENSCGRP00000022742	2133 (aa)	XP_007638032	-

Gene Model

Click here to download ENSCGRG00000016472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000016472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000016472	Snrnp200	86	41.864	ENSCGRG00000012933	Ascc3	80	44.088
ENSCGRG00000016472	Snrnp200	75	32.439	ENSCGRG00000017181	Hfm1	59	32.439

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000016472	Snrnp200	100	99.205	ENSG00000144028	SNRNP200	100	99.205	Homo_sapiens
ENSCGRG00000016472	Snrnp200	99	90.385	ENSAPOG00000010223	snrnp200	99	90.276	Acanthochromis_polyacanthus
ENSCGRG00000016472	Snrnp200	100	99.158	ENSAMEG00000008996	SNRNP200	100	99.158	Ailuropoda_melanoleuca
ENSCGRG00000016472	Snrnp200	97	89.685	ENSACIG00000001764	snrnp200	98	89.685	Amphilophus_citrinellus
ENSCGRG00000016472	Snrnp200	99	90.291	ENSAOCG00000024593	snrnp200	100	89.471	Amphiprion_ocellaris
ENSCGRG00000016472	Snrnp200	97	89.524	ENSAPEG00000012554	snrnp200	100	89.524	Amphiprion_percula
ENSCGRG00000016472	Snrnp200	99	90.150	ENSATEG00000022522	snrnp200	99	90.042	Anabas_testudineus
ENSCGRG00000016472	Snrnp200	99	97.128	ENSAPLG00000004313	SNRNP200	100	97.128	Anas_platyrhynchos
ENSCGRG00000016472	Snrnp200	99	96.973	ENSACAG00000000434	SNRNP200	100	96.973	Anolis_carolinensis
ENSCGRG00000016472	Snrnp200	100	94.602	ENSANAG00000036625	SNRNP200	100	95.109	Aotus_nancymaae
ENSCGRG00000016472	Snrnp200	99	90.009	ENSACLG00000011188	snrnp200	99	89.902	Astatotilapia_calliptera
ENSCGRG00000016472	Snrnp200	99	90.103	ENSAMXG00000005684	snrnp200	99	89.995	Astyanax_mexicanus
ENSCGRG00000016472	Snrnp200	100	98.691	ENSBTAG00000000848	SNRNP200	100	98.691	Bos_taurus
ENSCGRG00000016472	Snrnp200	100	99.158	ENSCJAG00000007514	SNRNP200	100	99.158	Callithrix_jacchus
ENSCGRG00000016472	Snrnp200	100	98.369	ENSCAFG00020019979	SNRNP200	100	99.068	Canis_lupus_dingo
ENSCGRG00000016472	Snrnp200	100	98.878	ENSCHIG00000020611	SNRNP200	100	98.878	Capra_hircus
ENSCGRG00000016472	Snrnp200	100	99.205	ENSTSYG00000010467	SNRNP200	100	99.205	Carlito_syrichta
ENSCGRG00000016472	Snrnp200	99	98.826	ENSCAPG00000017234	SNRNP200	99	98.826	Cavia_aperea
ENSCGRG00000016472	Snrnp200	100	99.112	ENSCPOG00000006776	SNRNP200	100	99.112	Cavia_porcellus
ENSCGRG00000016472	Snrnp200	100	99.158	ENSCCAG00000033962	SNRNP200	100	99.158	Cebus_capucinus
ENSCGRG00000016472	Snrnp200	100	99.205	ENSCATG00000015790	SNRNP200	100	99.205	Cercocebus_atys
ENSCGRG00000016472	Snrnp200	100	98.971	ENSCLAG00000004116	SNRNP200	100	98.971	Chinchilla_lanigera
ENSCGRG00000016472	Snrnp200	100	99.158	ENSCSAG00000017369	SNRNP200	100	99.158	Chlorocebus_sabaeus
ENSCGRG00000016472	Snrnp200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCGRG00000016472	Snrnp200	100	97.059	ENSCPBG00000022571	SNRNP200	100	97.059	Chrysemys_picta_bellii
ENSCGRG00000016472	Snrnp200	99	76.119	ENSCING00000005082	-	99	76.259	Ciona_intestinalis
ENSCGRG00000016472	Snrnp200	100	93.703	ENSCANG00000033932	SNRNP200	100	99.105	Colobus_angolensis_palliatus
ENSCGRG00000016472	Snrnp200	100	99.532	ENSCGRG00001022610	Snrnp200	100	99.532	Cricetulus_griseus_chok1gshd
ENSCGRG00000016472	Snrnp200	100	89.434	ENSCSEG00000016399	snrnp200	100	89.434	Cynoglossus_semilaevis
ENSCGRG00000016472	Snrnp200	100	85.133	ENSCVAG00000017631	snrnp200	99	85.133	Cyprinodon_variegatus
ENSCGRG00000016472	Snrnp200	100	89.855	ENSDARG00000077536	snrnp200	99	89.855	Danio_rerio
ENSCGRG00000016472	Snrnp200	100	97.662	ENSDNOG00000011227	SNRNP200	100	97.662	Dasypus_novemcinctus
ENSCGRG00000016472	Snrnp200	100	96.592	ENSDORG00000005861	Snrnp200	100	96.592	Dipodomys_ordii
ENSCGRG00000016472	Snrnp200	100	73.826	FBgn0263599	l(3)72Ab	99	73.733	Drosophila_melanogaster
ENSCGRG00000016472	Snrnp200	95	99.483	ENSETEG00000000162	SNRNP200	74	99.483	Echinops_telfairi
ENSCGRG00000016472	Snrnp200	83	80.628	ENSEBUG00000016524	snrnp200	95	80.628	Eptatretus_burgeri
ENSCGRG00000016472	Snrnp200	100	98.045	ENSEASG00005001884	SNRNP200	100	98.045	Equus_asinus_asinus
ENSCGRG00000016472	Snrnp200	100	99.158	ENSECAG00000019675	SNRNP200	100	99.158	Equus_caballus
ENSCGRG00000016472	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCGRG00000016472	Snrnp200	99	90.338	ENSELUG00000018948	snrnp200	99	90.229	Esox_lucius
ENSCGRG00000016472	Snrnp200	100	99.205	ENSFCAG00000010699	SNRNP200	100	99.205	Felis_catus
ENSCGRG00000016472	Snrnp200	95	89.376	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCGRG00000016472	Snrnp200	100	99.018	ENSFDAG00000004683	SNRNP200	100	99.018	Fukomys_damarensis
ENSCGRG00000016472	Snrnp200	100	87.284	ENSFHEG00000003786	snrnp200	99	87.284	Fundulus_heteroclitus
ENSCGRG00000016472	Snrnp200	100	89.174	ENSGMOG00000004881	snrnp200	99	89.127	Gadus_morhua
ENSCGRG00000016472	Snrnp200	100	87.518	ENSGAFG00000010807	snrnp200	99	87.518	Gambusia_affinis
ENSCGRG00000016472	Snrnp200	100	89.506	ENSGACG00000011474	snrnp200	99	89.412	Gasterosteus_aculeatus
ENSCGRG00000016472	Snrnp200	95	96.971	ENSGAGG00000016069	SNRNP200	99	96.971	Gopherus_agassizii
ENSCGRG00000016472	Snrnp200	100	99.205	ENSGGOG00000005174	SNRNP200	100	99.205	Gorilla_gorilla
ENSCGRG00000016472	Snrnp200	97	87.214	ENSHBUG00000011322	snrnp200	99	87.260	Haplochromis_burtoni
ENSCGRG00000016472	Snrnp200	100	99.112	ENSHGLG00000006654	SNRNP200	100	99.112	Heterocephalus_glaber_female
ENSCGRG00000016472	Snrnp200	100	99.112	ENSHGLG00100018594	SNRNP200	100	99.112	Heterocephalus_glaber_male
ENSCGRG00000016472	Snrnp200	100	99.158	ENSSTOG00000016351	SNRNP200	100	99.158	Ictidomys_tridecemlineatus
ENSCGRG00000016472	Snrnp200	100	99.065	ENSJJAG00000023659	Snrnp200	100	99.065	Jaculus_jaculus
ENSCGRG00000016472	Snrnp200	100	87.046	ENSKMAG00000003665	snrnp200	99	87.046	Kryptolebias_marmoratus
ENSCGRG00000016472	Snrnp200	100	89.762	ENSLBEG00000021585	snrnp200	99	89.762	Labrus_bergylta
ENSCGRG00000016472	Snrnp200	82	93.986	ENSLACG00000000226	SNRNP200	99	93.986	Latimeria_chalumnae
ENSCGRG00000016472	Snrnp200	100	91.585	ENSLOCG00000015198	snrnp200	99	91.585	Lepisosteus_oculatus
ENSCGRG00000016472	Snrnp200	100	98.878	ENSLAFG00000015626	SNRNP200	100	98.878	Loxodonta_africana
ENSCGRG00000016472	Snrnp200	100	99.158	ENSMFAG00000040174	SNRNP200	100	99.158	Macaca_fascicularis
ENSCGRG00000016472	Snrnp200	100	99.158	ENSMMUG00000023261	SNRNP200	100	99.158	Macaca_mulatta
ENSCGRG00000016472	Snrnp200	100	99.112	ENSMNEG00000032398	SNRNP200	100	99.112	Macaca_nemestrina
ENSCGRG00000016472	Snrnp200	100	99.205	ENSMLEG00000019083	SNRNP200	100	99.205	Mandrillus_leucophaeus
ENSCGRG00000016472	Snrnp200	100	89.720	ENSMAMG00000007851	snrnp200	99	89.673	Mastacembelus_armatus
ENSCGRG00000016472	Snrnp200	97	87.214	ENSMZEG00005010787	snrnp200	99	87.260	Maylandia_zebra
ENSCGRG00000016472	Snrnp200	97	96.667	ENSMGAG00000001831	SNRNP200	100	96.667	Meleagris_gallopavo
ENSCGRG00000016472	Snrnp200	100	99.392	ENSMAUG00000011825	Snrnp200	100	99.392	Mesocricetus_auratus
ENSCGRG00000016472	Snrnp200	100	99.158	ENSMICG00000004710	SNRNP200	100	99.158	Microcebus_murinus
ENSCGRG00000016472	Snrnp200	100	96.821	ENSMOCG00000011814	Snrnp200	100	96.821	Microtus_ochrogaster
ENSCGRG00000016472	Snrnp200	99	88.508	ENSMMOG00000014167	snrnp200	99	88.406	Mola_mola
ENSCGRG00000016472	Snrnp200	100	98.270	ENSMODG00000008475	SNRNP200	100	98.270	Monodelphis_domestica
ENSCGRG00000016472	Snrnp200	99	90.291	ENSMALG00000001973	snrnp200	99	90.182	Monopterus_albus
ENSCGRG00000016472	Snrnp200	100	99.205	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.205	Mus_caroli
ENSCGRG00000016472	Snrnp200	100	99.252	ENSMUSG00000003660	Snrnp200	100	99.252	Mus_musculus
ENSCGRG00000016472	Snrnp200	100	99.299	MGP_PahariEiJ_G0025695	Snrnp200	100	99.299	Mus_pahari
ENSCGRG00000016472	Snrnp200	100	99.252	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.252	Mus_spretus
ENSCGRG00000016472	Snrnp200	100	99.112	ENSMPUG00000008949	SNRNP200	100	99.112	Mustela_putorius_furo
ENSCGRG00000016472	Snrnp200	100	94.764	ENSMLUG00000027511	-	100	94.764	Myotis_lucifugus
ENSCGRG00000016472	Snrnp200	100	98.459	ENSMLUG00000010493	SNRNP200	100	98.459	Myotis_lucifugus
ENSCGRG00000016472	Snrnp200	100	99.299	ENSNGAG00000021993	Snrnp200	100	99.299	Nannospalax_galili
ENSCGRG00000016472	Snrnp200	90	89.641	ENSNBRG00000017960	snrnp200	98	89.641	Neolamprologus_brichardi
ENSCGRG00000016472	Snrnp200	100	94.568	ENSNLEG00000000025	SNRNP200	100	95.137	Nomascus_leucogenys
ENSCGRG00000016472	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCGRG00000016472	Snrnp200	100	95.278	ENSOPRG00000015464	SNRNP200	100	95.278	Ochotona_princeps
ENSCGRG00000016472	Snrnp200	100	98.971	ENSODEG00000008366	SNRNP200	100	98.971	Octodon_degus
ENSCGRG00000016472	Snrnp200	99	90.009	ENSONIG00000010714	snrnp200	99	89.902	Oreochromis_niloticus
ENSCGRG00000016472	Snrnp200	100	99.065	ENSOCUG00000009864	SNRNP200	100	99.065	Oryctolagus_cuniculus
ENSCGRG00000016472	Snrnp200	100	89.808	ENSORLG00000012286	snrnp200	100	89.808	Oryzias_latipes
ENSCGRG00000016472	Snrnp200	100	89.855	ENSORLG00020004648	snrnp200	100	89.855	Oryzias_latipes_hni
ENSCGRG00000016472	Snrnp200	100	89.808	ENSORLG00015019114	snrnp200	100	89.808	Oryzias_latipes_hsok
ENSCGRG00000016472	Snrnp200	99	90.056	ENSOMEG00000011834	snrnp200	99	89.949	Oryzias_melastigma
ENSCGRG00000016472	Snrnp200	100	99.205	ENSOGAG00000006879	SNRNP200	100	99.205	Otolemur_garnettii
ENSCGRG00000016472	Snrnp200	100	97.850	ENSOARG00000013949	SNRNP200	100	97.850	Ovis_aries
ENSCGRG00000016472	Snrnp200	100	99.205	ENSPPAG00000041559	SNRNP200	100	99.205	Pan_paniscus
ENSCGRG00000016472	Snrnp200	100	99.205	ENSPPRG00000004435	SNRNP200	100	99.205	Panthera_pardus
ENSCGRG00000016472	Snrnp200	100	98.738	ENSPTIG00000006380	SNRNP200	100	98.738	Panthera_tigris_altaica
ENSCGRG00000016472	Snrnp200	100	99.205	ENSPTRG00000012230	SNRNP200	100	99.205	Pan_troglodytes
ENSCGRG00000016472	Snrnp200	100	99.158	ENSPANG00000006017	SNRNP200	100	99.158	Papio_anubis
ENSCGRG00000016472	Snrnp200	100	90.603	ENSPKIG00000014762	snrnp200	99	90.603	Paramormyrops_kingsleyae
ENSCGRG00000016472	Snrnp200	100	96.028	ENSPSIG00000008580	SNRNP200	100	96.028	Pelodiscus_sinensis
ENSCGRG00000016472	Snrnp200	100	98.270	ENSPCIG00000023050	SNRNP200	100	98.270	Phascolarctos_cinereus
ENSCGRG00000016472	Snrnp200	100	89.860	ENSPFOG00000015110	snrnp200	99	89.860	Poecilia_formosa
ENSCGRG00000016472	Snrnp200	97	89.879	ENSPLAG00000006711	snrnp200	99	89.879	Poecilia_latipinna
ENSCGRG00000016472	Snrnp200	97	89.824	ENSPMEG00000021166	snrnp200	99	89.824	Poecilia_mexicana
ENSCGRG00000016472	Snrnp200	100	89.949	ENSPREG00000008875	snrnp200	99	89.949	Poecilia_reticulata
ENSCGRG00000016472	Snrnp200	100	99.205	ENSPPYG00000012068	SNRNP200	100	99.205	Pongo_abelii
ENSCGRG00000016472	Snrnp200	95	99.315	ENSPCAG00000008536	SNRNP200	86	99.315	Procavia_capensis
ENSCGRG00000016472	Snrnp200	100	99.205	ENSPCOG00000024608	SNRNP200	100	99.205	Propithecus_coquereli
ENSCGRG00000016472	Snrnp200	96	99.660	ENSPVAG00000005860	SNRNP200	93	99.660	Pteropus_vampyrus
ENSCGRG00000016472	Snrnp200	99	85.500	ENSPNYG00000017476	snrnp200	99	85.408	Pundamilia_nyererei
ENSCGRG00000016472	Snrnp200	100	85.601	ENSPNAG00000010998	snrnp200	99	85.601	Pygocentrus_nattereri
ENSCGRG00000016472	Snrnp200	100	99.392	ENSRNOG00000012157	Snrnp200	100	99.392	Rattus_norvegicus
ENSCGRG00000016472	Snrnp200	100	99.205	ENSRBIG00000044690	-	100	99.205	Rhinopithecus_bieti
ENSCGRG00000016472	Snrnp200	100	99.205	ENSRROG00000037952	-	100	99.205	Rhinopithecus_roxellana
ENSCGRG00000016472	Snrnp200	100	99.158	ENSSBOG00000035471	SNRNP200	100	99.158	Saimiri_boliviensis_boliviensis
ENSCGRG00000016472	Snrnp200	97	98.164	ENSSHAG00000000758	SNRNP200	100	98.164	Sarcophilus_harrisii
ENSCGRG00000016472	Snrnp200	99	91.276	ENSSFOG00015018826	snrnp200	99	91.164	Scleropages_formosus
ENSCGRG00000016472	Snrnp200	99	89.962	ENSSMAG00000005463	snrnp200	99	89.855	Scophthalmus_maximus
ENSCGRG00000016472	Snrnp200	99	90.244	ENSSDUG00000021410	snrnp200	99	90.136	Seriola_dumerili
ENSCGRG00000016472	Snrnp200	99	90.197	ENSSLDG00000010884	snrnp200	99	90.089	Seriola_lalandi_dorsalis
ENSCGRG00000016472	Snrnp200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSCGRG00000016472	Snrnp200	100	96.821	ENSSPUG00000003726	-	100	96.821	Sphenodon_punctatus
ENSCGRG00000016472	Snrnp200	99	90.291	ENSSPAG00000001842	snrnp200	99	90.182	Stegastes_partitus
ENSCGRG00000016472	Snrnp200	100	99.018	ENSSSCG00000008127	SNRNP200	100	99.018	Sus_scrofa
ENSCGRG00000016472	Snrnp200	99	87.485	ENSTGUG00000014475	-	100	87.485	Taeniopygia_guttata
ENSCGRG00000016472	Snrnp200	99	89.916	ENSTRUG00000001307	snrnp200	99	89.808	Takifugu_rubripes
ENSCGRG00000016472	Snrnp200	100	85.456	ENSTNIG00000004320	snrnp200	100	85.456	Tetraodon_nigroviridis
ENSCGRG00000016472	Snrnp200	83	100.000	ENSTBEG00000003329	-	64	100.000	Tupaia_belangeri
ENSCGRG00000016472	Snrnp200	100	98.831	ENSTTRG00000004983	SNRNP200	100	98.831	Tursiops_truncatus
ENSCGRG00000016472	Snrnp200	75	92.829	ENSUAMG00000008395	-	95	92.829	Ursus_americanus
ENSCGRG00000016472	Snrnp200	100	99.205	ENSUMAG00000012385	SNRNP200	100	99.205	Ursus_maritimus
ENSCGRG00000016472	Snrnp200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCGRG00000016472	Snrnp200	100	98.974	ENSVVUG00000026247	SNRNP200	100	98.974	Vulpes_vulpes
ENSCGRG00000016472	Snrnp200	100	93.838	ENSXETG00000001243	snrnp200	100	93.838	Xenopus_tropicalis
ENSCGRG00000016472	Snrnp200	97	89.898	ENSXMAG00000002058	snrnp200	98	89.898	Xiphophorus_maculatus