EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000017560 (Gene tree)
Gene ID: -
Gene Symbol: Prpf4
Alias: 1600015H11Rik
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 19845 bases
Position: chrJH000394.1:1217787-1237631
Accession: 100753511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000024223	PRP4	PF08799.11	4.3e-14	1	1
ENSCGRP00000024222	PRP4	PF08799.11	4.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000024552	-	6426	XM_003503462	ENSCGRP00000024222	521 (aa)	XP_003503510	G3HI03
ENSCGRT00000024553	-	1503	-	ENSCGRP00000024223	500 (aa)	-	-

Gene Model

Click here to download ENSCGRG00000017560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000017560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000017560	Prpf4	56	33.673	ENSCGRG00000013364	Tbl3	71	33.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000017560	Prpf4	100	99.232	ENSG00000136875	PRPF4	100	99.232	Homo_sapiens
ENSCGRG00000017560	Prpf4	96	77.615	ENSAPOG00000014132	prpf4	98	77.615	Acanthochromis_polyacanthus
ENSCGRG00000017560	Prpf4	100	99.424	ENSAMEG00000013048	PRPF4	98	99.424	Ailuropoda_melanoleuca
ENSCGRG00000017560	Prpf4	96	76.984	ENSACIG00000005579	prpf4	99	76.984	Amphilophus_citrinellus
ENSCGRG00000017560	Prpf4	96	77.030	ENSAOCG00000005457	prpf4	99	77.030	Amphiprion_ocellaris
ENSCGRG00000017560	Prpf4	96	76.832	ENSAPEG00000000776	prpf4	99	76.832	Amphiprion_percula
ENSCGRG00000017560	Prpf4	96	76.786	ENSATEG00000023013	prpf4	99	76.786	Anabas_testudineus
ENSCGRG00000017560	Prpf4	100	88.868	ENSAPLG00000006534	PRPF4	97	88.868	Anas_platyrhynchos
ENSCGRG00000017560	Prpf4	100	89.675	ENSACAG00000015110	PRPF4	100	89.675	Anolis_carolinensis
ENSCGRG00000017560	Prpf4	100	99.616	ENSANAG00000022464	PRPF4	96	99.616	Aotus_nancymaae
ENSCGRG00000017560	Prpf4	96	76.786	ENSACLG00000019031	prpf4	99	76.786	Astatotilapia_calliptera
ENSCGRG00000017560	Prpf4	97	71.138	ENSAMXG00000006756	prpf4	99	73.663	Astyanax_mexicanus
ENSCGRG00000017560	Prpf4	100	98.656	ENSBTAG00000004571	PRPF4	100	98.656	Bos_taurus
ENSCGRG00000017560	Prpf4	90	44.093	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
ENSCGRG00000017560	Prpf4	100	99.425	ENSCJAG00000017856	PRPF4	100	99.425	Callithrix_jacchus
ENSCGRG00000017560	Prpf4	100	99.424	ENSCAFG00000003224	PRPF4	97	99.424	Canis_familiaris
ENSCGRG00000017560	Prpf4	100	99.424	ENSCAFG00020022637	PRPF4	100	99.424	Canis_lupus_dingo
ENSCGRG00000017560	Prpf4	100	98.851	ENSCHIG00000024648	-	100	98.851	Capra_hircus
ENSCGRG00000017560	Prpf4	100	99.232	ENSTSYG00000010366	PRPF4	100	99.232	Carlito_syrichta
ENSCGRG00000017560	Prpf4	88	88.305	ENSCAPG00000008935	PRPF4	97	88.305	Cavia_aperea
ENSCGRG00000017560	Prpf4	100	98.848	ENSCPOG00000010747	-	100	98.848	Cavia_porcellus
ENSCGRG00000017560	Prpf4	100	92.322	ENSCPOG00000014729	-	100	92.322	Cavia_porcellus
ENSCGRG00000017560	Prpf4	100	99.424	ENSCCAG00000028990	PRPF4	100	99.424	Cebus_capucinus
ENSCGRG00000017560	Prpf4	100	99.232	ENSCATG00000021552	PRPF4	100	99.232	Cercocebus_atys
ENSCGRG00000017560	Prpf4	100	99.040	ENSCLAG00000013448	PRPF4	100	99.040	Chinchilla_lanigera
ENSCGRG00000017560	Prpf4	87	95.354	ENSCHOG00000007233	PRPF4	100	95.354	Choloepus_hoffmanni
ENSCGRG00000017560	Prpf4	99	91.068	ENSCPBG00000019136	PRPF4	74	91.068	Chrysemys_picta_bellii
ENSCGRG00000017560	Prpf4	96	59.055	ENSCING00000001299	-	97	58.416	Ciona_intestinalis
ENSCGRG00000017560	Prpf4	96	57.341	ENSCSAVG00000009178	-	100	58.658	Ciona_savignyi
ENSCGRG00000017560	Prpf4	100	99.424	ENSCANG00000003246	PRPF4	100	99.424	Colobus_angolensis_palliatus
ENSCGRG00000017560	Prpf4	100	100.000	ENSCGRG00001016992	Prpf4	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000017560	Prpf4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
ENSCGRG00000017560	Prpf4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
ENSCGRG00000017560	Prpf4	100	98.851	ENSDNOG00000013203	PRPF4	100	98.851	Dasypus_novemcinctus
ENSCGRG00000017560	Prpf4	100	99.232	ENSDORG00000026275	Prpf4	100	99.232	Dipodomys_ordii
ENSCGRG00000017560	Prpf4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSCGRG00000017560	Prpf4	100	97.323	ENSETEG00000020389	PRPF4	100	97.323	Echinops_telfairi
ENSCGRG00000017560	Prpf4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSCGRG00000017560	Prpf4	100	99.616	ENSEASG00005022678	PRPF4	100	99.616	Equus_asinus_asinus
ENSCGRG00000017560	Prpf4	100	99.781	ENSECAG00000007072	PRPF4	100	99.616	Equus_caballus
ENSCGRG00000017560	Prpf4	100	78.384	ENSEEUG00000007480	PRPF4	100	78.384	Erinaceus_europaeus
ENSCGRG00000017560	Prpf4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
ENSCGRG00000017560	Prpf4	100	99.425	ENSFCAG00000005514	PRPF4	100	99.425	Felis_catus
ENSCGRG00000017560	Prpf4	98	88.117	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
ENSCGRG00000017560	Prpf4	100	98.848	ENSFDAG00000005839	PRPF4	100	98.848	Fukomys_damarensis
ENSCGRG00000017560	Prpf4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSCGRG00000017560	Prpf4	98	89.824	ENSGALG00000008857	PRPF4	96	89.147	Gallus_gallus
ENSCGRG00000017560	Prpf4	67	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
ENSCGRG00000017560	Prpf4	96	69.841	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
ENSCGRG00000017560	Prpf4	99	91.262	ENSGAGG00000025029	PRPF4	95	91.262	Gopherus_agassizii
ENSCGRG00000017560	Prpf4	100	99.232	ENSGGOG00000006943	PRPF4	100	99.232	Gorilla_gorilla
ENSCGRG00000017560	Prpf4	96	76.587	ENSHBUG00000000562	prpf4	99	76.587	Haplochromis_burtoni
ENSCGRG00000017560	Prpf4	100	98.848	ENSHGLG00000015191	PRPF4	100	98.848	Heterocephalus_glaber_female
ENSCGRG00000017560	Prpf4	100	81.644	ENSHGLG00000016628	-	100	82.409	Heterocephalus_glaber_female
ENSCGRG00000017560	Prpf4	100	80.473	ENSHGLG00000003838	-	100	80.473	Heterocephalus_glaber_female
ENSCGRG00000017560	Prpf4	100	80.473	ENSHGLG00100005571	-	100	80.473	Heterocephalus_glaber_male
ENSCGRG00000017560	Prpf4	97	79.010	ENSIPUG00000017956	PRPF4	99	79.010	Ictalurus_punctatus
ENSCGRG00000017560	Prpf4	100	99.040	ENSSTOG00000027833	PRPF4	100	99.040	Ictidomys_tridecemlineatus
ENSCGRG00000017560	Prpf4	100	99.232	ENSJJAG00000008838	Prpf4	100	99.232	Jaculus_jaculus
ENSCGRG00000017560	Prpf4	96	76.389	ENSKMAG00000013236	prpf4	99	76.389	Kryptolebias_marmoratus
ENSCGRG00000017560	Prpf4	96	75.697	ENSLBEG00000020611	prpf4	99	75.697	Labrus_bergylta
ENSCGRG00000017560	Prpf4	99	80.347	ENSLACG00000016317	PRPF4	99	80.347	Latimeria_chalumnae
ENSCGRG00000017560	Prpf4	97	81.980	ENSLOCG00000000581	prpf4	99	81.980	Lepisosteus_oculatus
ENSCGRG00000017560	Prpf4	100	98.659	ENSLAFG00000018225	PRPF4	100	98.659	Loxodonta_africana
ENSCGRG00000017560	Prpf4	100	99.040	ENSMFAG00000039397	PRPF4	100	99.040	Macaca_fascicularis
ENSCGRG00000017560	Prpf4	100	99.232	ENSMMUG00000005844	PRPF4	100	99.232	Macaca_mulatta
ENSCGRG00000017560	Prpf4	100	88.868	ENSMNEG00000033737	PRPF4	100	88.868	Macaca_nemestrina
ENSCGRG00000017560	Prpf4	100	99.232	ENSMLEG00000040284	PRPF4	100	99.232	Mandrillus_leucophaeus
ENSCGRG00000017560	Prpf4	97	75.937	ENSMAMG00000020141	prpf4	99	75.937	Mastacembelus_armatus
ENSCGRG00000017560	Prpf4	96	76.786	ENSMZEG00005023205	prpf4	99	76.786	Maylandia_zebra
ENSCGRG00000017560	Prpf4	99	88.077	ENSMGAG00000001796	PRPF4	97	88.077	Meleagris_gallopavo
ENSCGRG00000017560	Prpf4	100	99.424	ENSMAUG00000018022	Prpf4	100	99.424	Mesocricetus_auratus
ENSCGRG00000017560	Prpf4	100	98.464	ENSMICG00000015022	PRPF4	100	98.276	Microcebus_murinus
ENSCGRG00000017560	Prpf4	100	99.424	ENSMOCG00000018273	Prpf4	100	99.424	Microtus_ochrogaster
ENSCGRG00000017560	Prpf4	97	75.050	ENSMMOG00000021177	prpf4	99	75.050	Mola_mola
ENSCGRG00000017560	Prpf4	100	95.220	ENSMODG00000025096	-	97	95.220	Monodelphis_domestica
ENSCGRG00000017560	Prpf4	100	94.646	ENSMODG00000004444	-	100	94.646	Monodelphis_domestica
ENSCGRG00000017560	Prpf4	96	76.389	ENSMALG00000013624	prpf4	99	76.389	Monopterus_albus
ENSCGRG00000017560	Prpf4	100	99.808	MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	Mus_caroli
ENSCGRG00000017560	Prpf4	100	99.808	ENSMUSG00000066148	Prpf4	100	99.808	Mus_musculus
ENSCGRG00000017560	Prpf4	100	99.616	MGP_PahariEiJ_G0028413	Prpf4	100	99.616	Mus_pahari
ENSCGRG00000017560	Prpf4	100	99.808	MGP_SPRETEiJ_G0027042	Prpf4	100	99.808	Mus_spretus
ENSCGRG00000017560	Prpf4	100	99.424	ENSMPUG00000007883	PRPF4	100	99.424	Mustela_putorius_furo
ENSCGRG00000017560	Prpf4	100	99.040	ENSMLUG00000015309	-	97	99.040	Myotis_lucifugus
ENSCGRG00000017560	Prpf4	100	97.121	ENSMLUG00000008626	-	97	97.121	Myotis_lucifugus
ENSCGRG00000017560	Prpf4	100	93.858	ENSNGAG00000000468	Prpf4	100	93.858	Nannospalax_galili
ENSCGRG00000017560	Prpf4	96	76.984	ENSNBRG00000007972	prpf4	99	76.984	Neolamprologus_brichardi
ENSCGRG00000017560	Prpf4	100	99.616	ENSNLEG00000016647	PRPF4	100	99.616	Nomascus_leucogenys
ENSCGRG00000017560	Prpf4	99	95.136	ENSMEUG00000013256	PRPF4	100	95.136	Notamacropus_eugenii
ENSCGRG00000017560	Prpf4	100	98.659	ENSOPRG00000005302	PRPF4	100	98.659	Ochotona_princeps
ENSCGRG00000017560	Prpf4	100	99.232	ENSODEG00000018147	PRPF4	100	99.232	Octodon_degus
ENSCGRG00000017560	Prpf4	99	75.096	ENSONIG00000012671	prpf4	99	76.786	Oreochromis_niloticus
ENSCGRG00000017560	Prpf4	100	99.424	ENSOCUG00000005046	PRPF4	100	99.424	Oryctolagus_cuniculus
ENSCGRG00000017560	Prpf4	96	74.701	ENSORLG00000019641	prpf4	99	74.701	Oryzias_latipes
ENSCGRG00000017560	Prpf4	96	74.701	ENSORLG00020019438	prpf4	99	74.701	Oryzias_latipes_hni
ENSCGRG00000017560	Prpf4	96	74.526	ENSOMEG00000020941	prpf4	99	74.526	Oryzias_melastigma
ENSCGRG00000017560	Prpf4	100	94.242	ENSOGAG00000007802	PRPF4	98	94.242	Otolemur_garnettii
ENSCGRG00000017560	Prpf4	100	99.040	ENSOARG00000006319	PRPF4	97	99.040	Ovis_aries
ENSCGRG00000017560	Prpf4	100	99.232	ENSPPAG00000041797	PRPF4	100	99.232	Pan_paniscus
ENSCGRG00000017560	Prpf4	100	99.616	ENSPPRG00000014360	PRPF4	100	99.616	Panthera_pardus
ENSCGRG00000017560	Prpf4	100	99.616	ENSPTIG00000009574	PRPF4	100	99.616	Panthera_tigris_altaica
ENSCGRG00000017560	Prpf4	100	99.232	ENSPTRG00000021274	PRPF4	100	99.042	Pan_troglodytes
ENSCGRG00000017560	Prpf4	100	99.040	ENSPANG00000025776	PRPF4	96	99.040	Papio_anubis
ENSCGRG00000017560	Prpf4	97	81.386	ENSPKIG00000017259	prpf4	99	81.386	Paramormyrops_kingsleyae
ENSCGRG00000017560	Prpf4	100	89.443	ENSPSIG00000010713	PRPF4	91	89.961	Pelodiscus_sinensis
ENSCGRG00000017560	Prpf4	99	58.608	ENSPMGG00000000997	prpf4	99	58.716	Periophthalmus_magnuspinnatus
ENSCGRG00000017560	Prpf4	100	100.000	ENSPEMG00000024115	Prpf4	100	100.000	Peromyscus_maniculatus_bairdii
ENSCGRG00000017560	Prpf4	99	95.136	ENSPCIG00000003821	PRPF4	99	95.136	Phascolarctos_cinereus
ENSCGRG00000017560	Prpf4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSCGRG00000017560	Prpf4	82	69.659	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSCGRG00000017560	Prpf4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSCGRG00000017560	Prpf4	98	99.025	ENSPCAG00000002561	PRPF4	99	99.025	Procavia_capensis
ENSCGRG00000017560	Prpf4	100	99.040	ENSPCOG00000011975	PRPF4	100	99.040	Propithecus_coquereli
ENSCGRG00000017560	Prpf4	100	95.402	ENSPVAG00000004708	PRPF4	100	95.402	Pteropus_vampyrus
ENSCGRG00000017560	Prpf4	96	76.786	ENSPNYG00000008013	prpf4	99	76.786	Pundamilia_nyererei
ENSCGRG00000017560	Prpf4	97	80.594	ENSPNAG00000000697	prpf4	99	80.594	Pygocentrus_nattereri
ENSCGRG00000017560	Prpf4	100	99.616	ENSRNOG00000014777	Prpf4	100	99.616	Rattus_norvegicus
ENSCGRG00000017560	Prpf4	100	99.424	ENSRBIG00000040221	PRPF4	100	99.424	Rhinopithecus_bieti
ENSCGRG00000017560	Prpf4	100	99.424	ENSRROG00000040240	PRPF4	100	99.424	Rhinopithecus_roxellana
ENSCGRG00000017560	Prpf4	100	95.602	ENSSHAG00000017658	PRPF4	100	95.602	Sarcophilus_harrisii
ENSCGRG00000017560	Prpf4	97	82.178	ENSSFOG00015008963	prpf4	99	82.178	Scleropages_formosus
ENSCGRG00000017560	Prpf4	96	75.397	ENSSMAG00000008889	prpf4	99	75.397	Scophthalmus_maximus
ENSCGRG00000017560	Prpf4	96	73.307	ENSSDUG00000022083	prpf4	98	73.506	Seriola_dumerili
ENSCGRG00000017560	Prpf4	96	73.506	ENSSLDG00000008115	prpf4	98	73.705	Seriola_lalandi_dorsalis
ENSCGRG00000017560	Prpf4	100	90.595	ENSSPUG00000015582	PRPF4	100	90.595	Sphenodon_punctatus
ENSCGRG00000017560	Prpf4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
ENSCGRG00000017560	Prpf4	100	99.616	ENSSSCG00000024648	PRPF4	100	99.616	Sus_scrofa
ENSCGRG00000017560	Prpf4	95	90.061	ENSTGUG00000002623	PRPF4	100	90.389	Taeniopygia_guttata
ENSCGRG00000017560	Prpf4	97	75.692	ENSTRUG00000008853	prpf4	99	75.692	Takifugu_rubripes
ENSCGRG00000017560	Prpf4	97	75.050	ENSTNIG00000013250	prpf4	99	75.050	Tetraodon_nigroviridis
ENSCGRG00000017560	Prpf4	100	90.421	ENSTBEG00000000821	PRPF4	100	90.421	Tupaia_belangeri
ENSCGRG00000017560	Prpf4	82	98.993	ENSTTRG00000003246	PRPF4	85	98.993	Tursiops_truncatus
ENSCGRG00000017560	Prpf4	67	96.407	ENSUAMG00000018288	PRPF4	90	96.407	Ursus_americanus
ENSCGRG00000017560	Prpf4	100	98.656	ENSUMAG00000019375	PRPF4	100	98.656	Ursus_maritimus
ENSCGRG00000017560	Prpf4	100	98.851	ENSVPAG00000005281	PRPF4	100	98.851	Vicugna_pacos
ENSCGRG00000017560	Prpf4	100	98.286	ENSVVUG00000002476	PRPF4	100	98.286	Vulpes_vulpes
ENSCGRG00000017560	Prpf4	77	63.281	ENSXCOG00000006101	prpf4	93	62.597	Xiphophorus_couchianus
ENSCGRG00000017560	Prpf4	96	67.901	ENSXMAG00000002750	prpf4	98	67.901	Xiphophorus_maculatus