EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001000807 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 2516 bases
Position: chrscaffold_1:102661100-102663615
Accession: 100772252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001001051	LSM	PF01423.22	3.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001001078	-	267	-	ENSCGRP00001001054	88 (aa)	-	-
ENSCGRT00001001075	-	312	-	ENSCGRP00001001051	103 (aa)	XP_007614904	UPI00038BF1DE

Gene Model

Click here to download ENSCGRG00001000807's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001000807's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001000807	-	69	35.211	ENSCGRG00001013878	-	81	35.211
ENSCGRG00001000807	-	69	38.028	ENSCGRG00001010645	-	83	38.028
ENSCGRG00001000807	-	66	36.765	ENSCGRG00001013591	-	87	36.765
ENSCGRG00001000807	-	72	35.526	ENSCGRG00001000450	Lsm8	73	35.526
ENSCGRG00001000807	-	69	36.620	ENSCGRG00001011831	-	83	36.620
ENSCGRG00001000807	-	69	33.803	ENSCGRG00001011009	-	82	33.803
ENSCGRG00001000807	-	87	88.889	ENSCGRG00001016005	-	92	88.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001000807	-	100	99.029	ENSG00000130332	LSM7	100	99.029	Homo_sapiens
ENSCGRG00001000807	-	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSCGRG00001000807	-	100	96.117	ENSAMEG00000005484	LSM7	100	96.117	Ailuropoda_melanoleuca
ENSCGRG00001000807	-	95	93.878	ENSACIG00000006498	lsm7	78	93.878	Amphilophus_citrinellus
ENSCGRG00001000807	-	98	94.059	ENSAOCG00000001077	lsm7	92	94.059	Amphiprion_ocellaris
ENSCGRG00001000807	-	100	94.175	ENSAPEG00000000694	lsm7	100	94.175	Amphiprion_percula
ENSCGRG00001000807	-	100	92.233	ENSAPEG00000024447	lsm7	92	94.059	Amphiprion_percula
ENSCGRG00001000807	-	100	94.175	ENSATEG00000008557	lsm7	100	94.175	Anabas_testudineus
ENSCGRG00001000807	-	100	90.291	ENSANAG00000022222	-	100	90.291	Aotus_nancymaae
ENSCGRG00001000807	-	100	99.029	ENSANAG00000037196	-	100	99.029	Aotus_nancymaae
ENSCGRG00001000807	-	100	93.204	ENSACLG00000021021	lsm7	100	93.204	Astatotilapia_calliptera
ENSCGRG00001000807	-	100	94.175	ENSAMXG00000037622	lsm7	100	94.175	Astyanax_mexicanus
ENSCGRG00001000807	-	100	99.029	ENSBTAG00000004521	LSM7	100	99.029	Bos_taurus
ENSCGRG00001000807	-	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSCGRG00001000807	-	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSCGRG00001000807	-	98	98.020	ENSCAFG00000019409	LSM7	98	98.020	Canis_familiaris
ENSCGRG00001000807	-	98	98.020	ENSCAFG00020018168	LSM7	74	98.020	Canis_lupus_dingo
ENSCGRG00001000807	-	100	97.087	ENSCHIG00000023663	LSM7	100	97.087	Capra_hircus
ENSCGRG00001000807	-	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSCGRG00001000807	-	100	99.029	ENSCPOG00000014025	LSM7	100	99.029	Cavia_porcellus
ENSCGRG00001000807	-	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSCGRG00001000807	-	100	99.029	ENSCATG00000023543	LSM7	100	99.029	Cercocebus_atys
ENSCGRG00001000807	-	100	99.029	ENSCLAG00000011635	LSM7	100	99.029	Chinchilla_lanigera
ENSCGRG00001000807	-	100	99.029	ENSCSAG00000011599	LSM7	100	99.029	Chlorocebus_sabaeus
ENSCGRG00001000807	-	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSCGRG00001000807	-	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSCGRG00001000807	-	100	99.029	ENSCANG00000035525	LSM7	100	99.029	Colobus_angolensis_palliatus
ENSCGRG00001000807	-	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSCGRG00001000807	-	98	100.000	ENSCGRG00000014355	-	97	100.000	Cricetulus_griseus_crigri
ENSCGRG00001000807	-	98	94.059	ENSCSEG00000014900	lsm7	86	94.059	Cynoglossus_semilaevis
ENSCGRG00001000807	-	98	95.050	ENSCVAG00000021091	lsm7	94	95.050	Cyprinodon_variegatus
ENSCGRG00001000807	-	100	94.175	ENSDARG00000058328	lsm7	100	94.175	Danio_rerio
ENSCGRG00001000807	-	99	97.059	ENSDORG00000024460	Lsm7	100	97.059	Dipodomys_ordii
ENSCGRG00001000807	-	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSCGRG00001000807	-	98	96.040	ENSETEG00000012788	LSM7	99	96.040	Echinops_telfairi
ENSCGRG00001000807	-	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSCGRG00001000807	-	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCGRG00001000807	-	100	97.087	ENSECAG00000001440	LSM7	66	97.087	Equus_caballus
ENSCGRG00001000807	-	100	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSCGRG00001000807	-	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSCGRG00001000807	-	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSCGRG00001000807	-	89	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSCGRG00001000807	-	100	92.233	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSCGRG00001000807	-	100	95.146	ENSGAFG00000013902	lsm7	100	95.146	Gambusia_affinis
ENSCGRG00001000807	-	100	93.204	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSCGRG00001000807	-	100	99.029	ENSGGOG00000010172	LSM7	100	99.029	Gorilla_gorilla
ENSCGRG00001000807	-	100	93.204	ENSHBUG00000004616	lsm7	100	93.204	Haplochromis_burtoni
ENSCGRG00001000807	-	100	99.029	ENSHGLG00000010587	LSM7	100	99.029	Heterocephalus_glaber_female
ENSCGRG00001000807	-	100	99.029	ENSHGLG00100000852	LSM7	100	99.029	Heterocephalus_glaber_male
ENSCGRG00001000807	-	98	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSCGRG00001000807	-	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSCGRG00001000807	-	98	99.010	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSCGRG00001000807	-	98	99.010	ENSJJAG00000001936	Lsm7	98	99.010	Jaculus_jaculus
ENSCGRG00001000807	-	100	95.146	ENSKMAG00000022151	lsm7	100	95.146	Kryptolebias_marmoratus
ENSCGRG00001000807	-	100	93.204	ENSLBEG00000005203	lsm7	100	93.204	Labrus_bergylta
ENSCGRG00001000807	-	100	96.117	ENSLACG00000015700	LSM7	100	96.117	Latimeria_chalumnae
ENSCGRG00001000807	-	100	95.146	ENSLOCG00000004356	lsm7	100	95.146	Lepisosteus_oculatus
ENSCGRG00001000807	-	98	99.010	ENSLAFG00000029302	LSM7	98	99.010	Loxodonta_africana
ENSCGRG00001000807	-	100	99.029	ENSMFAG00000044572	LSM7	100	99.029	Macaca_fascicularis
ENSCGRG00001000807	-	100	99.029	ENSMMUG00000000452	LSM7	100	99.029	Macaca_mulatta
ENSCGRG00001000807	-	100	99.029	ENSMNEG00000004393	LSM7	100	99.029	Macaca_nemestrina
ENSCGRG00001000807	-	100	99.029	ENSMLEG00000030852	LSM7	100	99.029	Mandrillus_leucophaeus
ENSCGRG00001000807	-	100	93.204	ENSMAMG00000005410	lsm7	100	93.204	Mastacembelus_armatus
ENSCGRG00001000807	-	100	93.204	ENSMZEG00005028055	lsm7	100	93.204	Maylandia_zebra
ENSCGRG00001000807	-	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSCGRG00001000807	-	100	100.000	ENSMAUG00000009276	Lsm7	100	100.000	Mesocricetus_auratus
ENSCGRG00001000807	-	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSCGRG00001000807	-	100	99.029	ENSMICG00000028619	-	100	99.029	Microcebus_murinus
ENSCGRG00001000807	-	100	100.000	ENSMOCG00000016925	Lsm7	100	100.000	Microtus_ochrogaster
ENSCGRG00001000807	-	100	94.175	ENSMMOG00000019645	lsm7	98	94.175	Mola_mola
ENSCGRG00001000807	-	100	98.058	ENSMODG00000004722	LSM7	100	98.058	Monodelphis_domestica
ENSCGRG00001000807	-	100	93.204	ENSMALG00000014511	lsm7	79	93.204	Monopterus_albus
ENSCGRG00001000807	-	100	98.058	MGP_CAROLIEiJ_G0015607	Lsm7	100	98.058	Mus_caroli
ENSCGRG00001000807	-	100	98.058	ENSMUSG00000035215	Lsm7	100	98.058	Mus_musculus
ENSCGRG00001000807	-	100	98.058	MGP_PahariEiJ_G0031020	Lsm7	100	98.058	Mus_pahari
ENSCGRG00001000807	-	100	98.058	MGP_SPRETEiJ_G0016425	Lsm7	100	98.058	Mus_spretus
ENSCGRG00001000807	-	100	91.262	ENSMLUG00000024002	-	94	91.262	Myotis_lucifugus
ENSCGRG00001000807	-	100	96.117	ENSMLUG00000013097	-	100	96.117	Myotis_lucifugus
ENSCGRG00001000807	-	100	99.029	ENSNGAG00000021637	Lsm7	100	99.029	Nannospalax_galili
ENSCGRG00001000807	-	91	93.617	ENSNBRG00000001237	-	82	91.262	Neolamprologus_brichardi
ENSCGRG00001000807	-	98	93.069	ENSNBRG00000015770	lsm7	87	93.069	Neolamprologus_brichardi
ENSCGRG00001000807	-	100	99.029	ENSNLEG00000002265	LSM7	100	99.029	Nomascus_leucogenys
ENSCGRG00001000807	-	100	99.029	ENSODEG00000013590	-	100	99.029	Octodon_degus
ENSCGRG00001000807	-	100	78.641	ENSODEG00000008190	-	100	78.641	Octodon_degus
ENSCGRG00001000807	-	100	92.233	ENSODEG00000018769	-	100	92.233	Octodon_degus
ENSCGRG00001000807	-	100	93.204	ENSONIG00000001801	lsm7	89	93.204	Oreochromis_niloticus
ENSCGRG00001000807	-	100	94.175	ENSORLG00000023951	lsm7	100	94.175	Oryzias_latipes
ENSCGRG00001000807	-	100	94.175	ENSORLG00020022226	lsm7	100	94.175	Oryzias_latipes_hni
ENSCGRG00001000807	-	100	92.233	ENSORLG00015020044	lsm7	94	94.059	Oryzias_latipes_hsok
ENSCGRG00001000807	-	100	94.175	ENSOMEG00000012806	lsm7	100	94.175	Oryzias_melastigma
ENSCGRG00001000807	-	100	89.320	ENSOGAG00000024373	-	100	89.320	Otolemur_garnettii
ENSCGRG00001000807	-	98	99.010	ENSOGAG00000000144	-	99	99.010	Otolemur_garnettii
ENSCGRG00001000807	-	100	97.087	ENSOARG00000014013	LSM7	100	97.087	Ovis_aries
ENSCGRG00001000807	-	100	99.029	ENSPPAG00000026500	LSM7	100	99.029	Pan_paniscus
ENSCGRG00001000807	-	100	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSCGRG00001000807	-	98	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSCGRG00001000807	-	100	99.029	ENSPTRG00000010233	LSM7	100	99.029	Pan_troglodytes
ENSCGRG00001000807	-	100	99.029	ENSPANG00000020668	LSM7	100	99.029	Papio_anubis
ENSCGRG00001000807	-	100	96.117	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSCGRG00001000807	-	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSCGRG00001000807	-	100	94.175	ENSPMGG00000006498	lsm7	100	94.175	Periophthalmus_magnuspinnatus
ENSCGRG00001000807	-	100	98.058	ENSPCIG00000030454	LSM7	100	98.058	Phascolarctos_cinereus
ENSCGRG00001000807	-	100	92.233	ENSPFOG00000012467	lsm7	91	92.233	Poecilia_formosa
ENSCGRG00001000807	-	100	92.233	ENSPLAG00000000252	lsm7	94	93.137	Poecilia_latipinna
ENSCGRG00001000807	-	100	92.233	ENSPMEG00000000587	lsm7	94	93.137	Poecilia_mexicana
ENSCGRG00001000807	-	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSCGRG00001000807	-	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSCGRG00001000807	-	100	99.029	ENSPCOG00000017177	LSM7	100	99.029	Propithecus_coquereli
ENSCGRG00001000807	-	100	93.204	ENSPNYG00000006938	lsm7	100	93.204	Pundamilia_nyererei
ENSCGRG00001000807	-	100	94.175	ENSPNAG00000010141	lsm7	100	94.175	Pygocentrus_nattereri
ENSCGRG00001000807	-	100	99.029	ENSRNOG00000019552	Lsm7	100	99.029	Rattus_norvegicus
ENSCGRG00001000807	-	100	99.029	ENSRBIG00000035978	LSM7	100	99.029	Rhinopithecus_bieti
ENSCGRG00001000807	-	100	99.029	ENSRROG00000034044	LSM7	100	99.029	Rhinopithecus_roxellana
ENSCGRG00001000807	-	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSCGRG00001000807	-	100	99.029	ENSSBOG00000034899	LSM7	100	99.029	Saimiri_boliviensis_boliviensis
ENSCGRG00001000807	-	100	94.175	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSCGRG00001000807	-	100	92.233	ENSSMAG00000004195	lsm7	93	94.059	Scophthalmus_maximus
ENSCGRG00001000807	-	100	94.175	ENSSDUG00000001863	lsm7	100	94.175	Seriola_dumerili
ENSCGRG00001000807	-	100	94.175	ENSSLDG00000016339	lsm7	100	94.175	Seriola_lalandi_dorsalis
ENSCGRG00001000807	-	100	94.175	ENSSPAG00000015221	lsm7	100	94.175	Stegastes_partitus
ENSCGRG00001000807	-	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSCGRG00001000807	-	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSCGRG00001000807	-	100	94.175	ENSTRUG00000022913	lsm7	100	94.175	Takifugu_rubripes
ENSCGRG00001000807	-	100	94.175	ENSTNIG00000015525	lsm7	100	94.175	Tetraodon_nigroviridis
ENSCGRG00001000807	-	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCGRG00001000807	-	100	96.117	ENSUAMG00000000912	LSM7	86	96.117	Ursus_americanus
ENSCGRG00001000807	-	98	98.020	ENSUMAG00000006556	LSM7	79	98.020	Ursus_maritimus
ENSCGRG00001000807	-	69	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSCGRG00001000807	-	98	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSCGRG00001000807	-	99	94.118	ENSXCOG00000002572	lsm7	100	94.118	Xiphophorus_couchianus
ENSCGRG00001000807	-	100	95.146	ENSXMAG00000018630	lsm7	100	95.146	Xiphophorus_maculatus