EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001002070 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrscaffold_7:41519793-41520905
Accession: 100754173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001002038	RRM_5	PF13893.6	2.9e-12	1	2
ENSCGRP00001002038	RRM_5	PF13893.6	2.9e-12	2	2
ENSCGRP00001002038	RRM_1	PF00076.22	1.7e-84	1	4
ENSCGRP00001002038	RRM_1	PF00076.22	1.7e-84	2	4
ENSCGRP00001002038	RRM_1	PF00076.22	1.7e-84	3	4
ENSCGRP00001002038	RRM_1	PF00076.22	1.7e-84	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001002542	-	1113	XM_003495473	ENSCGRP00001002038	370 (aa)	XP_003495521	G3GSV2

Gene Model

Click here to download ENSCGRG00001002070's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001002070's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001002070	Pabpc4l	98	30.519	ENSCGRG00001020348	Elavl4	86	30.519
ENSCGRG00001002070	Pabpc4l	66	32.515	ENSCGRG00001004713	Trnau1ap	66	32.515
ENSCGRG00001002070	Pabpc4l	96	30.519	ENSCGRG00001018927	Elavl3	87	30.719
ENSCGRG00001002070	Pabpc4l	98	67.218	ENSCGRG00001022067	-	60	67.218
ENSCGRG00001002070	Pabpc4l	96	37.705	ENSCGRG00001003590	Sf3b4	54	38.378
ENSCGRG00001002070	Pabpc4l	99	62.766	ENSCGRG00001007983	Pabpc6	61	62.766
ENSCGRG00001002070	Pabpc4l	97	59.167	ENSCGRG00001021938	Pabpc1l	71	59.167
ENSCGRG00001002070	Pabpc4l	99	69.041	ENSCGRG00001018166	Pabpc4	62	69.421
ENSCGRG00001002070	Pabpc4l	96	33.735	ENSCGRG00001024409	Elavl2	86	33.735
ENSCGRG00001002070	Pabpc4l	85	38.158	ENSCGRG00001018909	Rbm3	59	36.471
ENSCGRG00001002070	Pabpc4l	98	64.535	ENSCGRG00001023387	-	98	59.694

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001002070	Pabpc4l	100	82.973	ENSG00000254535	PABPC4L	100	82.973	Homo_sapiens
ENSCGRG00001002070	Pabpc4l	100	82.162	ENSANAG00000017199	PABPC4L	87	82.162	Aotus_nancymaae
ENSCGRG00001002070	Pabpc4l	99	82.114	ENSBTAG00000046902	PABPC4L	99	82.114	Bos_taurus
ENSCGRG00001002070	Pabpc4l	100	82.703	ENSCJAG00000045332	PABPC4L	86	82.703	Callithrix_jacchus
ENSCGRG00001002070	Pabpc4l	99	68.750	ENSCAFG00020019182	-	54	68.750	Canis_lupus_dingo
ENSCGRG00001002070	Pabpc4l	99	82.114	ENSCHIG00000007231	PABPC4L	99	82.114	Capra_hircus
ENSCGRG00001002070	Pabpc4l	98	73.731	ENSCAPG00000000555	PABPC4L	100	73.731	Cavia_aperea
ENSCGRG00001002070	Pabpc4l	100	70.541	ENSCPOG00000033167	PABPC4L	100	70.541	Cavia_porcellus
ENSCGRG00001002070	Pabpc4l	100	82.432	ENSCCAG00000031681	PABPC4L	86	82.432	Cebus_capucinus
ENSCGRG00001002070	Pabpc4l	100	77.027	ENSCLAG00000017628	PABPC4L	100	77.027	Chinchilla_lanigera
ENSCGRG00001002070	Pabpc4l	100	80.811	ENSCANG00000037677	PABPC4L	100	80.811	Colobus_angolensis_palliatus
ENSCGRG00001002070	Pabpc4l	100	100.000	ENSCGRG00000020086	Pabpc4l	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001002070	Pabpc4l	100	80.541	ENSDNOG00000031077	PABPC4L	95	80.541	Dasypus_novemcinctus
ENSCGRG00001002070	Pabpc4l	99	79.946	ENSEASG00005007883	PABPC4L	99	79.946	Equus_asinus_asinus
ENSCGRG00001002070	Pabpc4l	99	80.217	ENSECAG00000031416	PABPC4L	99	80.217	Equus_caballus
ENSCGRG00001002070	Pabpc4l	99	80.488	ENSFCAG00000028270	PABPC4L	99	80.488	Felis_catus
ENSCGRG00001002070	Pabpc4l	99	74.526	ENSFDAG00000019606	PABPC4L	99	74.526	Fukomys_damarensis
ENSCGRG00001002070	Pabpc4l	100	82.703	ENSGGOG00000024991	PABPC4L	100	82.703	Gorilla_gorilla
ENSCGRG00001002070	Pabpc4l	99	75.881	ENSHGLG00000020104	PABPC4L	99	75.881	Heterocephalus_glaber_female
ENSCGRG00001002070	Pabpc4l	99	75.881	ENSHGLG00100020648	PABPC4L	99	75.881	Heterocephalus_glaber_male
ENSCGRG00001002070	Pabpc4l	100	81.941	ENSSTOG00000019472	PABPC4L	99	81.941	Ictidomys_tridecemlineatus
ENSCGRG00001002070	Pabpc4l	99	80.488	ENSJJAG00000004090	Pabpc4l	99	80.488	Jaculus_jaculus
ENSCGRG00001002070	Pabpc4l	100	97.568	ENSMAUG00000016313	Pabpc4l	100	97.568	Mesocricetus_auratus
ENSCGRG00001002070	Pabpc4l	100	81.622	ENSMICG00000029683	PABPC4L	100	81.622	Microcebus_murinus
ENSCGRG00001002070	Pabpc4l	100	94.865	ENSMOCG00000007551	Pabpc4l	100	94.865	Microtus_ochrogaster
ENSCGRG00001002070	Pabpc4l	100	87.838	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.000	Mus_caroli
ENSCGRG00001002070	Pabpc4l	100	88.108	ENSMUSG00000090919	Pabpc4l	100	92.000	Mus_musculus
ENSCGRG00001002070	Pabpc4l	100	88.378	MGP_PahariEiJ_G0026409	Pabpc4l	100	90.000	Mus_pahari
ENSCGRG00001002070	Pabpc4l	100	87.568	MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.000	Mus_spretus
ENSCGRG00001002070	Pabpc4l	99	74.255	ENSMLUG00000008254	PABPC4L	99	74.255	Myotis_lucifugus
ENSCGRG00001002070	Pabpc4l	100	87.838	ENSNGAG00000001502	Pabpc4l	100	87.838	Nannospalax_galili
ENSCGRG00001002070	Pabpc4l	100	82.703	ENSNLEG00000019300	PABPC4L	100	82.703	Nomascus_leucogenys
ENSCGRG00001002070	Pabpc4l	100	75.405	ENSOGAG00000026166	PABPC4L	100	75.405	Otolemur_garnettii
ENSCGRG00001002070	Pabpc4l	99	82.972	ENSPPAG00000043745	PABPC4L	93	82.972	Pan_paniscus
ENSCGRG00001002070	Pabpc4l	99	80.217	ENSPPRG00000018628	PABPC4L	99	80.217	Panthera_pardus
ENSCGRG00001002070	Pabpc4l	99	80.488	ENSPTIG00000010106	PABPC4L	99	80.488	Panthera_tigris_altaica
ENSCGRG00001002070	Pabpc4l	99	82.972	ENSPTRG00000045513	-	77	82.972	Pan_troglodytes
ENSCGRG00001002070	Pabpc4l	100	93.784	ENSPEMG00000012565	Pabpc4l	100	93.784	Peromyscus_maniculatus_bairdii
ENSCGRG00001002070	Pabpc4l	100	82.162	ENSPCOG00000025578	PABPC4L	100	82.162	Propithecus_coquereli
ENSCGRG00001002070	Pabpc4l	100	88.919	ENSRNOG00000029749	Pabpc4l	100	88.919	Rattus_norvegicus
ENSCGRG00001002070	Pabpc4l	100	80.270	ENSRBIG00000030229	PABPC4L	100	80.270	Rhinopithecus_bieti
ENSCGRG00001002070	Pabpc4l	100	80.000	ENSRROG00000020367	PABPC4L	100	80.000	Rhinopithecus_roxellana
ENSCGRG00001002070	Pabpc4l	100	81.622	ENSSBOG00000016382	PABPC4L	100	81.622	Saimiri_boliviensis_boliviensis
ENSCGRG00001002070	Pabpc4l	99	75.068	ENSSSCG00000009067	PABPC4L	99	75.068	Sus_scrofa
ENSCGRG00001002070	Pabpc4l	99	79.946	ENSUAMG00000001289	PABPC4L	99	79.946	Ursus_americanus
ENSCGRG00001002070	Pabpc4l	99	79.946	ENSUMAG00000014887	PABPC4L	99	79.946	Ursus_maritimus
ENSCGRG00001002070	Pabpc4l	96	71.341	ENSVVUG00000011060	-	82	71.341	Vulpes_vulpes