EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001002259 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 1106 bases
Position: chrscaffold_2:96470681-96471786
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001002160	LSM	PF01423.22	2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001002757	-	348	-	ENSCGRP00001002160	115 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001002259's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001002259's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001002259	-	97	82.883	ENSCGRG00001024560	-	80	82.883
ENSCGRG00001002259	-	56	30.769	ENSCGRG00001000450	Lsm8	68	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001002259	-	97	81.982	ENSG00000175324	LSM1	70	93.548	Homo_sapiens
ENSCGRG00001002259	-	97	72.072	ENSAPOG00000010833	lsm1	80	72.072	Acanthochromis_polyacanthus
ENSCGRG00001002259	-	97	81.982	ENSAMEG00000011141	LSM1	80	81.982	Ailuropoda_melanoleuca
ENSCGRG00001002259	-	62	83.099	ENSACIG00000019593	lsm1	59	83.099	Amphilophus_citrinellus
ENSCGRG00001002259	-	97	72.072	ENSAOCG00000017096	lsm1	80	72.072	Amphiprion_ocellaris
ENSCGRG00001002259	-	97	72.072	ENSAOCG00000017997	-	80	72.072	Amphiprion_ocellaris
ENSCGRG00001002259	-	97	72.072	ENSAPEG00000011669	lsm1	80	72.072	Amphiprion_percula
ENSCGRG00001002259	-	97	72.072	ENSATEG00000022266	lsm1	80	72.072	Anabas_testudineus
ENSCGRG00001002259	-	97	81.982	ENSANAG00000027785	LSM1	70	93.548	Aotus_nancymaae
ENSCGRG00001002259	-	97	72.072	ENSACLG00000011400	lsm1	80	72.072	Astatotilapia_calliptera
ENSCGRG00001002259	-	97	74.775	ENSAMXG00000005441	lsm1	80	74.775	Astyanax_mexicanus
ENSCGRG00001002259	-	97	81.982	ENSBTAG00000001612	LSM1	80	81.982	Bos_taurus
ENSCGRG00001002259	-	60	57.971	WBGene00003076	lsm-1	55	57.971	Caenorhabditis_elegans
ENSCGRG00001002259	-	97	81.982	ENSCJAG00000048015	LSM1	70	93.548	Callithrix_jacchus
ENSCGRG00001002259	-	97	81.982	ENSCAFG00000006113	LSM1	80	81.982	Canis_familiaris
ENSCGRG00001002259	-	97	81.982	ENSCAFG00020001822	LSM1	80	81.982	Canis_lupus_dingo
ENSCGRG00001002259	-	97	81.982	ENSCHIG00000013194	LSM1	80	81.982	Capra_hircus
ENSCGRG00001002259	-	97	81.982	ENSTSYG00000010394	LSM1	70	93.548	Carlito_syrichta
ENSCGRG00001002259	-	97	81.982	ENSCPOG00000032671	LSM1	80	81.982	Cavia_porcellus
ENSCGRG00001002259	-	97	81.982	ENSCCAG00000037171	LSM1	70	93.548	Cebus_capucinus
ENSCGRG00001002259	-	97	81.982	ENSCATG00000020377	LSM1	73	90.625	Cercocebus_atys
ENSCGRG00001002259	-	97	81.982	ENSCLAG00000001137	LSM1	80	81.982	Chinchilla_lanigera
ENSCGRG00001002259	-	97	81.982	ENSCSAG00000015485	LSM1	80	81.982	Chlorocebus_sabaeus
ENSCGRG00001002259	-	97	81.982	ENSCHOG00000006030	LSM1	80	81.982	Choloepus_hoffmanni
ENSCGRG00001002259	-	94	74.074	ENSCPBG00000006569	LSM1	70	74.074	Chrysemys_picta_bellii
ENSCGRG00001002259	-	84	63.918	ENSCING00000013536	-	81	59.821	Ciona_intestinalis
ENSCGRG00001002259	-	97	81.982	ENSCANG00000019173	LSM1	70	93.548	Colobus_angolensis_palliatus
ENSCGRG00001002259	-	97	82.883	ENSCGRG00000006554	-	80	82.883	Cricetulus_griseus_crigri
ENSCGRG00001002259	-	100	100.000	ENSCGRG00000013603	-	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001002259	-	96	72.727	ENSCSEG00000008319	lsm1	72	72.727	Cynoglossus_semilaevis
ENSCGRG00001002259	-	97	72.072	ENSCSEG00000010570	lsm1	73	72.072	Cynoglossus_semilaevis
ENSCGRG00001002259	-	97	71.171	ENSCVAG00000003871	lsm1	80	71.171	Cyprinodon_variegatus
ENSCGRG00001002259	-	97	73.874	ENSDARG00000043177	lsm1	80	73.874	Danio_rerio
ENSCGRG00001002259	-	97	75.676	ENSDNOG00000030989	-	79	75.676	Dasypus_novemcinctus
ENSCGRG00001002259	-	97	81.081	ENSDNOG00000032911	-	80	81.081	Dasypus_novemcinctus
ENSCGRG00001002259	-	97	81.982	ENSDNOG00000046387	-	80	81.982	Dasypus_novemcinctus
ENSCGRG00001002259	-	96	67.273	ENSDNOG00000046620	-	88	67.273	Dasypus_novemcinctus
ENSCGRG00001002259	-	97	81.982	ENSDORG00000028172	Lsm1	80	81.982	Dipodomys_ordii
ENSCGRG00001002259	-	81	62.366	FBgn0261067	LSm1	75	60.185	Drosophila_melanogaster
ENSCGRG00001002259	-	97	82.883	ENSEASG00005016677	LSM1	80	82.883	Equus_asinus_asinus
ENSCGRG00001002259	-	97	82.883	ENSECAG00000010461	LSM1	80	82.883	Equus_caballus
ENSCGRG00001002259	-	61	91.429	ENSEEUG00000015181	LSM1	71	91.429	Erinaceus_europaeus
ENSCGRG00001002259	-	97	72.973	ENSELUG00000002322	lsm1	80	72.973	Esox_lucius
ENSCGRG00001002259	-	97	75.000	ENSELUG00000023374	lsm1	80	75.000	Esox_lucius
ENSCGRG00001002259	-	97	81.982	ENSFCAG00000039335	LSM1	70	93.548	Felis_catus
ENSCGRG00001002259	-	90	78.641	ENSFALG00000006723	LSM1	83	78.641	Ficedula_albicollis
ENSCGRG00001002259	-	97	81.982	ENSFDAG00000007658	LSM1	80	81.982	Fukomys_damarensis
ENSCGRG00001002259	-	97	71.171	ENSFHEG00000009556	lsm1	80	71.171	Fundulus_heteroclitus
ENSCGRG00001002259	-	97	72.072	ENSGMOG00000016651	lsm1	78	72.072	Gadus_morhua
ENSCGRG00001002259	-	97	77.477	ENSGALG00000003245	LSM1	80	77.477	Gallus_gallus
ENSCGRG00001002259	-	97	71.171	ENSGAFG00000011355	lsm1	80	71.171	Gambusia_affinis
ENSCGRG00001002259	-	97	71.171	ENSGACG00000011763	lsm1	78	71.171	Gasterosteus_aculeatus
ENSCGRG00001002259	-	97	78.378	ENSGAGG00000024065	LSM1	80	78.378	Gopherus_agassizii
ENSCGRG00001002259	-	97	81.982	ENSGGOG00000022658	LSM1	70	93.548	Gorilla_gorilla
ENSCGRG00001002259	-	97	72.072	ENSHBUG00000010897	lsm1	80	72.072	Haplochromis_burtoni
ENSCGRG00001002259	-	82	78.723	ENSHGLG00000017574	-	79	78.723	Heterocephalus_glaber_female
ENSCGRG00001002259	-	97	81.982	ENSHGLG00000005711	LSM1	80	81.982	Heterocephalus_glaber_female
ENSCGRG00001002259	-	97	81.982	ENSHGLG00100017660	LSM1	80	81.982	Heterocephalus_glaber_male
ENSCGRG00001002259	-	82	78.723	ENSHGLG00100012152	-	79	78.723	Heterocephalus_glaber_male
ENSCGRG00001002259	-	97	71.171	ENSHCOG00000017233	lsm1	80	71.171	Hippocampus_comes
ENSCGRG00001002259	-	97	74.775	ENSIPUG00000002312	LSM1	80	74.775	Ictalurus_punctatus
ENSCGRG00001002259	-	62	90.141	ENSSTOG00000026870	LSM1	87	90.141	Ictidomys_tridecemlineatus
ENSCGRG00001002259	-	97	81.081	ENSJJAG00000014605	-	80	81.081	Jaculus_jaculus
ENSCGRG00001002259	-	97	72.072	ENSKMAG00000003016	lsm1	80	72.072	Kryptolebias_marmoratus
ENSCGRG00001002259	-	97	72.072	ENSLBEG00000022352	lsm1	80	72.072	Labrus_bergylta
ENSCGRG00001002259	-	90	75.728	ENSLACG00000010947	LSM1	81	75.728	Latimeria_chalumnae
ENSCGRG00001002259	-	97	77.477	ENSLOCG00000015149	lsm1	80	77.477	Lepisosteus_oculatus
ENSCGRG00001002259	-	97	81.982	ENSLAFG00000003534	LSM1	80	81.982	Loxodonta_africana
ENSCGRG00001002259	-	97	81.982	ENSMFAG00000032661	LSM1	70	93.548	Macaca_fascicularis
ENSCGRG00001002259	-	97	81.982	ENSMLEG00000034535	LSM1	70	93.548	Mandrillus_leucophaeus
ENSCGRG00001002259	-	97	72.072	ENSMAMG00000007464	lsm1	80	72.072	Mastacembelus_armatus
ENSCGRG00001002259	-	97	72.072	ENSMZEG00005010321	lsm1	80	72.072	Maylandia_zebra
ENSCGRG00001002259	-	97	77.477	ENSMGAG00000002125	LSM1	80	77.477	Meleagris_gallopavo
ENSCGRG00001002259	-	97	81.982	ENSMICG00000030726	LSM1	70	93.548	Microcebus_murinus
ENSCGRG00001002259	-	97	82.883	ENSMOCG00000022817	Lsm1	80	82.883	Microtus_ochrogaster
ENSCGRG00001002259	-	97	72.072	ENSMMOG00000015466	lsm1	80	72.072	Mola_mola
ENSCGRG00001002259	-	97	80.180	ENSMODG00000010732	-	80	80.180	Monodelphis_domestica
ENSCGRG00001002259	-	62	83.099	ENSMALG00000001478	lsm1	76	83.099	Monopterus_albus
ENSCGRG00001002259	-	97	81.982	MGP_CAROLIEiJ_G0030930	Lsm1	80	81.982	Mus_caroli
ENSCGRG00001002259	-	97	81.982	ENSMUSG00000037296	Lsm1	74	90.625	Mus_musculus
ENSCGRG00001002259	-	97	81.982	MGP_PahariEiJ_G0021400	Lsm1	80	81.982	Mus_pahari
ENSCGRG00001002259	-	97	81.982	MGP_SPRETEiJ_G0032049	Lsm1	80	81.982	Mus_spretus
ENSCGRG00001002259	-	97	81.081	ENSMPUG00000009883	LSM1	80	81.081	Mustela_putorius_furo
ENSCGRG00001002259	-	97	81.081	ENSMLUG00000003734	LSM1	80	81.081	Myotis_lucifugus
ENSCGRG00001002259	-	97	81.081	ENSNGAG00000003753	Lsm1	80	81.081	Nannospalax_galili
ENSCGRG00001002259	-	62	83.099	ENSNBRG00000017370	lsm1	61	83.099	Neolamprologus_brichardi
ENSCGRG00001002259	-	97	81.982	ENSNLEG00000029390	LSM1	70	93.548	Nomascus_leucogenys
ENSCGRG00001002259	-	97	80.180	ENSMEUG00000014077	LSM1	80	80.180	Notamacropus_eugenii
ENSCGRG00001002259	-	89	81.373	ENSOPRG00000000333	LSM1	83	81.373	Ochotona_princeps
ENSCGRG00001002259	-	97	81.982	ENSODEG00000004834	LSM1	80	81.982	Octodon_degus
ENSCGRG00001002259	-	97	72.072	ENSONIG00000010782	lsm1	80	72.072	Oreochromis_niloticus
ENSCGRG00001002259	-	97	80.180	ENSOANG00000003256	LSM1	80	80.180	Ornithorhynchus_anatinus
ENSCGRG00001002259	-	97	81.982	ENSOCUG00000015399	LSM1	80	81.982	Oryctolagus_cuniculus
ENSCGRG00001002259	-	97	72.072	ENSORLG00000030288	lsm1	80	72.072	Oryzias_latipes
ENSCGRG00001002259	-	97	72.072	ENSORLG00020006213	-	69	72.072	Oryzias_latipes_hni
ENSCGRG00001002259	-	97	72.072	ENSORLG00020003941	lsm1	80	72.072	Oryzias_latipes_hni
ENSCGRG00001002259	-	97	72.072	ENSORLG00015018350	lsm1	80	72.072	Oryzias_latipes_hsok
ENSCGRG00001002259	-	97	72.072	ENSOMEG00000012454	lsm1	80	72.072	Oryzias_melastigma
ENSCGRG00001002259	-	97	81.982	ENSOGAG00000015161	LSM1	80	81.982	Otolemur_garnettii
ENSCGRG00001002259	-	97	81.982	ENSOARG00000001317	LSM1	80	81.982	Ovis_aries
ENSCGRG00001002259	-	97	81.982	ENSPPAG00000032279	LSM1	70	93.548	Pan_paniscus
ENSCGRG00001002259	-	97	81.982	ENSPPRG00000014172	-	70	93.548	Panthera_pardus
ENSCGRG00001002259	-	97	81.982	ENSPTIG00000010289	LSM1	70	93.548	Panthera_tigris_altaica
ENSCGRG00001002259	-	97	81.982	ENSPTRG00000020169	LSM1	70	93.548	Pan_troglodytes
ENSCGRG00001002259	-	97	81.982	ENSPANG00000008814	LSM1	70	93.548	Papio_anubis
ENSCGRG00001002259	-	97	75.676	ENSPKIG00000001839	lsm1	80	75.676	Paramormyrops_kingsleyae
ENSCGRG00001002259	-	97	72.973	ENSPKIG00000019409	LSM1	79	72.973	Paramormyrops_kingsleyae
ENSCGRG00001002259	-	97	72.973	ENSPSIG00000012563	LSM1	82	72.973	Pelodiscus_sinensis
ENSCGRG00001002259	-	77	71.591	ENSPMGG00000022999	lsm1	80	71.591	Periophthalmus_magnuspinnatus
ENSCGRG00001002259	-	85	70.408	ENSPMAG00000002671	lsm1	82	70.408	Petromyzon_marinus
ENSCGRG00001002259	-	97	80.180	ENSPCIG00000008880	LSM1	80	80.180	Phascolarctos_cinereus
ENSCGRG00001002259	-	97	71.171	ENSPFOG00000016029	lsm1	80	71.171	Poecilia_formosa
ENSCGRG00001002259	-	97	71.171	ENSPLAG00000007879	lsm1	80	71.171	Poecilia_latipinna
ENSCGRG00001002259	-	97	71.171	ENSPMEG00000023550	lsm1	80	71.171	Poecilia_mexicana
ENSCGRG00001002259	-	97	71.171	ENSPREG00000009574	lsm1	80	71.171	Poecilia_reticulata
ENSCGRG00001002259	-	97	81.982	ENSPPYG00000018521	LSM1	80	81.982	Pongo_abelii
ENSCGRG00001002259	-	97	81.982	ENSPCOG00000020901	-	70	93.548	Propithecus_coquereli
ENSCGRG00001002259	-	97	81.982	ENSPVAG00000006016	LSM1	80	81.982	Pteropus_vampyrus
ENSCGRG00001002259	-	97	72.072	ENSPNYG00000018067	lsm1	80	72.072	Pundamilia_nyererei
ENSCGRG00001002259	-	97	73.874	ENSPNAG00000013707	lsm1	80	73.874	Pygocentrus_nattereri
ENSCGRG00001002259	-	97	81.982	ENSRNOG00000015375	Lsm1	80	81.982	Rattus_norvegicus
ENSCGRG00001002259	-	97	81.982	ENSRBIG00000027449	LSM1	70	93.548	Rhinopithecus_bieti
ENSCGRG00001002259	-	97	81.982	ENSRROG00000036074	LSM1	70	93.548	Rhinopithecus_roxellana
ENSCGRG00001002259	-	97	80.180	ENSSHAG00000017260	LSM1	80	80.180	Sarcophilus_harrisii
ENSCGRG00001002259	-	97	76.577	ENSSFOG00015019528	lsm1	80	76.577	Scleropages_formosus
ENSCGRG00001002259	-	97	72.072	ENSSMAG00000004930	lsm1	80	72.072	Scophthalmus_maximus
ENSCGRG00001002259	-	97	72.072	ENSSDUG00000021823	lsm1	80	72.072	Seriola_dumerili
ENSCGRG00001002259	-	97	72.072	ENSSLDG00000012154	lsm1	80	72.072	Seriola_lalandi_dorsalis
ENSCGRG00001002259	-	97	78.378	ENSSPUG00000014878	LSM1	80	78.378	Sphenodon_punctatus
ENSCGRG00001002259	-	97	72.072	ENSSPAG00000020548	lsm1	80	72.072	Stegastes_partitus
ENSCGRG00001002259	-	97	82.883	ENSSSCG00000039058	LSM1	80	82.883	Sus_scrofa
ENSCGRG00001002259	-	97	78.378	ENSTGUG00000004793	LSM1	80	78.378	Taeniopygia_guttata
ENSCGRG00001002259	-	97	72.973	ENSTRUG00000025239	lsm1	80	72.973	Takifugu_rubripes
ENSCGRG00001002259	-	97	72.973	ENSTNIG00000004055	lsm1	80	72.973	Tetraodon_nigroviridis
ENSCGRG00001002259	-	89	81.373	ENSTBEG00000015884	LSM1	83	81.373	Tupaia_belangeri
ENSCGRG00001002259	-	97	81.982	ENSTTRG00000004482	LSM1	80	81.982	Tursiops_truncatus
ENSCGRG00001002259	-	97	81.982	ENSUAMG00000004103	LSM1	80	81.982	Ursus_americanus
ENSCGRG00001002259	-	97	81.982	ENSUMAG00000009132	LSM1	80	81.982	Ursus_maritimus
ENSCGRG00001002259	-	61	90.000	ENSVPAG00000011593	LSM1	91	90.000	Vicugna_pacos
ENSCGRG00001002259	-	63	68.056	ENSVVUG00000014880	-	77	68.056	Vulpes_vulpes
ENSCGRG00001002259	-	97	81.982	ENSVVUG00000020191	LSM1	80	81.982	Vulpes_vulpes
ENSCGRG00001002259	-	97	75.652	ENSXETG00000009004	lsm1	80	75.652	Xenopus_tropicalis
ENSCGRG00001002259	-	97	71.171	ENSXCOG00000015631	lsm1	80	71.171	Xiphophorus_couchianus
ENSCGRG00001002259	-	97	71.171	ENSXMAG00000026637	lsm1	80	71.171	Xiphophorus_maculatus