EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001004317 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 369 bases
Position: chrscaffold_2:27024343-27024711
Accession: 100759318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001003548	LSM	PF01423.22	6.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001005135	-	369	-	ENSCGRP00001003548	122 (aa)	XP_003500912	G3H9X1

Gene Model

Click here to download ENSCGRG00001004317's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001004317's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001004317	-	56	31.429	ENSCGRG00001013932	Lsm2	74	31.429
ENSCGRG00001004317	-	95	88.983	ENSCGRG00001022673	-	95	88.983

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001004317	-	100	89.344	ENSG00000181817	LSM10	99	89.344	Homo_sapiens
ENSCGRG00001004317	-	99	91.736	ENSAMEG00000019854	LSM10	98	91.736	Ailuropoda_melanoleuca
ENSCGRG00001004317	-	97	66.949	ENSACIG00000015420	oscp1a	78	66.949	Amphilophus_citrinellus
ENSCGRG00001004317	-	94	69.565	ENSAOCG00000014654	-	95	69.565	Amphiprion_ocellaris
ENSCGRG00001004317	-	94	69.565	ENSAOCG00000015618	LSM10	95	69.565	Amphiprion_ocellaris
ENSCGRG00001004317	-	91	66.667	ENSAOCG00000015607	LSM10	86	66.667	Amphiprion_ocellaris
ENSCGRG00001004317	-	94	69.565	ENSAPEG00000021845	-	95	69.565	Amphiprion_percula
ENSCGRG00001004317	-	91	66.667	ENSAPEG00000021851	LSM10	86	66.667	Amphiprion_percula
ENSCGRG00001004317	-	92	63.393	ENSATEG00000006310	oscp1a	83	63.393	Anabas_testudineus
ENSCGRG00001004317	-	99	67.769	ENSACAG00000001231	LSM10	98	67.769	Anolis_carolinensis
ENSCGRG00001004317	-	98	91.667	ENSANAG00000018759	-	98	91.667	Aotus_nancymaae
ENSCGRG00001004317	-	98	90.000	ENSANAG00000031489	-	98	90.000	Aotus_nancymaae
ENSCGRG00001004317	-	95	67.241	ENSACLG00000004728	oscp1a	94	67.241	Astatotilapia_calliptera
ENSCGRG00001004317	-	97	68.644	ENSAMXG00000025301	oscp1a	98	68.644	Astyanax_mexicanus
ENSCGRG00001004317	-	98	90.000	ENSBTAG00000024096	LSM10	98	90.000	Bos_taurus
ENSCGRG00001004317	-	98	90.833	ENSCJAG00000044880	LSM10	98	90.833	Callithrix_jacchus
ENSCGRG00001004317	-	99	95.041	ENSCAFG00000003382	LSM10	98	95.041	Canis_familiaris
ENSCGRG00001004317	-	99	95.041	ENSCAFG00020008920	LSM10	98	95.041	Canis_lupus_dingo
ENSCGRG00001004317	-	98	90.000	ENSCHIG00000009398	LSM10	98	90.000	Capra_hircus
ENSCGRG00001004317	-	99	90.909	ENSCAPG00000012567	LSM10	98	90.909	Cavia_aperea
ENSCGRG00001004317	-	99	90.909	ENSCPOG00000039302	LSM10	98	90.909	Cavia_porcellus
ENSCGRG00001004317	-	98	91.667	ENSCCAG00000018913	-	98	91.667	Cebus_capucinus
ENSCGRG00001004317	-	98	90.000	ENSCCAG00000008378	-	98	90.000	Cebus_capucinus
ENSCGRG00001004317	-	98	92.500	ENSCATG00000006589	LSM10	98	92.500	Cercocebus_atys
ENSCGRG00001004317	-	99	92.562	ENSCLAG00000008633	LSM10	98	92.562	Chinchilla_lanigera
ENSCGRG00001004317	-	98	92.500	ENSCSAG00000000134	LSM10	98	92.500	Chlorocebus_sabaeus
ENSCGRG00001004317	-	100	89.516	ENSCHOG00000008615	LSM10	99	89.516	Choloepus_hoffmanni
ENSCGRG00001004317	-	84	32.353	ENSCSAVG00000001896	-	87	32.353	Ciona_savignyi
ENSCGRG00001004317	-	98	92.500	ENSCANG00000019928	LSM10	98	92.500	Colobus_angolensis_palliatus
ENSCGRG00001004317	-	100	100.000	ENSCGRG00000014935	-	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001004317	-	95	88.983	ENSCGRG00000015514	-	95	88.983	Cricetulus_griseus_crigri
ENSCGRG00001004317	-	95	63.793	ENSCSEG00000010374	oscp1a	77	64.348	Cynoglossus_semilaevis
ENSCGRG00001004317	-	98	65.546	ENSCVAG00000001536	oscp1a	90	65.546	Cyprinodon_variegatus
ENSCGRG00001004317	-	99	71.901	ENSDARG00000101222	oscp1a	100	71.901	Danio_rerio
ENSCGRG00001004317	-	70	71.765	ENSDARG00000109563	CABZ01074453.1	99	71.765	Danio_rerio
ENSCGRG00001004317	-	98	94.167	ENSDNOG00000036662	LSM10	98	94.167	Dasypus_novemcinctus
ENSCGRG00001004317	-	100	93.443	ENSDORG00000007579	Lsm10	99	93.443	Dipodomys_ordii
ENSCGRG00001004317	-	99	91.736	ENSETEG00000005703	LSM10	98	91.736	Echinops_telfairi
ENSCGRG00001004317	-	96	52.991	ENSEBUG00000001312	oscp1a	96	52.991	Eptatretus_burgeri
ENSCGRG00001004317	-	99	95.041	ENSEASG00005012194	LSM10	98	95.041	Equus_asinus_asinus
ENSCGRG00001004317	-	99	95.868	ENSECAG00000005071	LSM10	98	95.868	Equus_caballus
ENSCGRG00001004317	-	99	93.388	ENSEEUG00000012032	LSM10	98	93.388	Erinaceus_europaeus
ENSCGRG00001004317	-	99	67.769	ENSELUG00000007452	oscp1a	99	67.769	Esox_lucius
ENSCGRG00001004317	-	99	71.074	ENSFALG00000000851	LSM10	98	71.074	Ficedula_albicollis
ENSCGRG00001004317	-	99	89.256	ENSFDAG00000021056	LSM10	98	89.256	Fukomys_damarensis
ENSCGRG00001004317	-	89	68.182	ENSFHEG00000001058	oscp1a	95	68.182	Fundulus_heteroclitus
ENSCGRG00001004317	-	87	66.981	ENSGMOG00000019832	oscp1a	89	66.981	Gadus_morhua
ENSCGRG00001004317	-	99	74.380	ENSGALG00000002127	LSM10	98	74.380	Gallus_gallus
ENSCGRG00001004317	-	94	61.017	ENSGAFG00000016445	oscp1a	94	61.017	Gambusia_affinis
ENSCGRG00001004317	-	95	64.655	ENSGACG00000002329	oscp1a	95	64.655	Gasterosteus_aculeatus
ENSCGRG00001004317	-	99	73.554	ENSGAGG00000024848	LSM10	98	73.554	Gopherus_agassizii
ENSCGRG00001004317	-	100	90.984	ENSGGOG00000003556	LSM10	99	90.984	Gorilla_gorilla
ENSCGRG00001004317	-	95	67.241	ENSHBUG00000001722	oscp1a	94	67.241	Haplochromis_burtoni
ENSCGRG00001004317	-	99	90.083	ENSHGLG00000011625	LSM10	98	90.083	Heterocephalus_glaber_female
ENSCGRG00001004317	-	99	90.083	ENSHGLG00100001769	LSM10	98	90.083	Heterocephalus_glaber_male
ENSCGRG00001004317	-	86	69.524	ENSIPUG00000005808	oscp1a	91	69.524	Ictalurus_punctatus
ENSCGRG00001004317	-	99	93.388	ENSSTOG00000000606	LSM10	98	93.388	Ictidomys_tridecemlineatus
ENSCGRG00001004317	-	95	64.655	ENSKMAG00000012143	oscp1a	96	64.655	Kryptolebias_marmoratus
ENSCGRG00001004317	-	98	65.000	ENSLBEG00000017764	oscp1a	98	65.000	Labrus_bergylta
ENSCGRG00001004317	-	99	73.554	ENSLACG00000015904	LSM10	93	73.554	Latimeria_chalumnae
ENSCGRG00001004317	-	98	70.000	ENSLOCG00000018277	oscp1a	98	70.000	Lepisosteus_oculatus
ENSCGRG00001004317	-	98	95.000	ENSLAFG00000009600	LSM10	98	95.000	Loxodonta_africana
ENSCGRG00001004317	-	98	92.500	ENSMFAG00000009115	LSM10	98	92.500	Macaca_fascicularis
ENSCGRG00001004317	-	98	92.500	ENSMMUG00000017338	LSM10	98	92.500	Macaca_mulatta
ENSCGRG00001004317	-	98	92.500	ENSMNEG00000020023	LSM10	98	92.500	Macaca_nemestrina
ENSCGRG00001004317	-	98	92.500	ENSMLEG00000025150	LSM10	98	92.500	Mandrillus_leucophaeus
ENSCGRG00001004317	-	98	64.167	ENSMAMG00000004427	oscp1a	98	64.167	Mastacembelus_armatus
ENSCGRG00001004317	-	95	67.241	ENSMZEG00005026307	oscp1a	94	67.241	Maylandia_zebra
ENSCGRG00001004317	-	99	73.554	ENSMGAG00000015707	LSM10	98	73.554	Meleagris_gallopavo
ENSCGRG00001004317	-	100	97.541	ENSMAUG00000016624	Lsm10	100	97.541	Mesocricetus_auratus
ENSCGRG00001004317	-	99	98.347	ENSMOCG00000021943	Lsm10	99	98.347	Microtus_ochrogaster
ENSCGRG00001004317	-	91	67.568	ENSMMOG00000013597	oscp1a	83	67.568	Mola_mola
ENSCGRG00001004317	-	99	83.471	ENSMODG00000023328	LSM10	98	83.471	Monodelphis_domestica
ENSCGRG00001004317	-	57	59.459	ENSMALG00000012661	oscp1a	58	59.459	Monopterus_albus
ENSCGRG00001004317	-	99	95.041	MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	Mus_caroli
ENSCGRG00001004317	-	99	95.868	ENSMUSG00000050188	Lsm10	100	95.699	Mus_musculus
ENSCGRG00001004317	-	99	95.868	MGP_PahariEiJ_G0028798	Lsm10	100	95.699	Mus_pahari
ENSCGRG00001004317	-	99	95.868	MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	Mus_spretus
ENSCGRG00001004317	-	99	95.041	ENSMPUG00000018593	LSM10	98	95.041	Mustela_putorius_furo
ENSCGRG00001004317	-	99	89.256	ENSMLUG00000023895	LSM10	98	89.256	Myotis_lucifugus
ENSCGRG00001004317	-	99	95.041	ENSNGAG00000015011	Lsm10	98	95.041	Nannospalax_galili
ENSCGRG00001004317	-	95	68.103	ENSNBRG00000014306	oscp1a	94	68.103	Neolamprologus_brichardi
ENSCGRG00001004317	-	100	90.984	ENSNLEG00000033754	LSM10	99	90.984	Nomascus_leucogenys
ENSCGRG00001004317	-	99	83.471	ENSMEUG00000006313	LSM10	98	83.471	Notamacropus_eugenii
ENSCGRG00001004317	-	99	90.083	ENSOPRG00000001699	LSM10	98	90.083	Ochotona_princeps
ENSCGRG00001004317	-	99	92.562	ENSODEG00000019161	LSM10	98	92.562	Octodon_degus
ENSCGRG00001004317	-	95	68.103	ENSONIG00000020904	oscp1a	95	68.103	Oreochromis_niloticus
ENSCGRG00001004317	-	99	77.686	ENSOANG00000002066	LSM10	98	77.686	Ornithorhynchus_anatinus
ENSCGRG00001004317	-	99	88.430	ENSOCUG00000005333	LSM10	98	88.430	Oryctolagus_cuniculus
ENSCGRG00001004317	-	96	67.521	ENSORLG00000009504	oscp1a	97	67.521	Oryzias_latipes
ENSCGRG00001004317	-	96	67.521	ENSORLG00020016201	oscp1a	97	67.521	Oryzias_latipes_hni
ENSCGRG00001004317	-	96	67.521	ENSORLG00015007794	oscp1a	97	67.521	Oryzias_latipes_hsok
ENSCGRG00001004317	-	99	92.562	ENSOGAG00000002653	LSM10	98	92.562	Otolemur_garnettii
ENSCGRG00001004317	-	98	90.000	ENSOARG00000009596	LSM10	98	90.000	Ovis_aries
ENSCGRG00001004317	-	100	89.344	ENSPPAG00000023465	LSM10	99	89.344	Pan_paniscus
ENSCGRG00001004317	-	99	95.041	ENSPPRG00000014619	LSM10	98	95.041	Panthera_pardus
ENSCGRG00001004317	-	99	95.041	ENSPTIG00000004613	LSM10	98	95.041	Panthera_tigris_altaica
ENSCGRG00001004317	-	100	89.344	ENSPTRG00000000539	LSM10	99	89.344	Pan_troglodytes
ENSCGRG00001004317	-	98	92.500	ENSPANG00000023172	LSM10	98	92.500	Papio_anubis
ENSCGRG00001004317	-	98	65.833	ENSPKIG00000003728	oscp1a	97	65.833	Paramormyrops_kingsleyae
ENSCGRG00001004317	-	99	74.380	ENSPSIG00000000590	LSM10	98	74.380	Pelodiscus_sinensis
ENSCGRG00001004317	-	62	64.474	ENSPMGG00000015718	oscp1a	99	64.474	Periophthalmus_magnuspinnatus
ENSCGRG00001004317	-	84	84.466	ENSPCIG00000014865	LSM10	76	84.466	Phascolarctos_cinereus
ENSCGRG00001004317	-	92	67.857	ENSPFOG00000020490	oscp1a	95	67.857	Poecilia_formosa
ENSCGRG00001004317	-	92	67.857	ENSPLAG00000016537	oscp1a	85	67.857	Poecilia_latipinna
ENSCGRG00001004317	-	89	68.519	ENSPMEG00000000174	oscp1a	94	68.519	Poecilia_mexicana
ENSCGRG00001004317	-	92	66.964	ENSPREG00000009899	oscp1a	85	66.964	Poecilia_reticulata
ENSCGRG00001004317	-	100	90.164	ENSPPYG00000001539	LSM10	99	90.164	Pongo_abelii
ENSCGRG00001004317	-	97	93.220	ENSPCAG00000002520	LSM10	97	93.220	Procavia_capensis
ENSCGRG00001004317	-	99	90.083	ENSPVAG00000008644	LSM10	98	90.083	Pteropus_vampyrus
ENSCGRG00001004317	-	95	67.241	ENSPNYG00000003138	oscp1a	94	67.241	Pundamilia_nyererei
ENSCGRG00001004317	-	96	67.521	ENSPNAG00000028829	oscp1a	97	67.521	Pygocentrus_nattereri
ENSCGRG00001004317	-	99	96.694	ENSRNOG00000025716	Lsm10	99	96.694	Rattus_norvegicus
ENSCGRG00001004317	-	98	92.500	ENSRBIG00000001561	LSM10	98	92.500	Rhinopithecus_bieti
ENSCGRG00001004317	-	98	92.500	ENSRROG00000011414	LSM10	98	92.500	Rhinopithecus_roxellana
ENSCGRG00001004317	-	98	91.667	ENSSBOG00000036413	-	98	91.667	Saimiri_boliviensis_boliviensis
ENSCGRG00001004317	-	99	82.645	ENSSHAG00000018056	LSM10	98	82.645	Sarcophilus_harrisii
ENSCGRG00001004317	-	99	65.289	ENSSFOG00015019954	lsm10	99	65.289	Scleropages_formosus
ENSCGRG00001004317	-	94	66.087	ENSSMAG00000001297	oscp1a	98	66.087	Scophthalmus_maximus
ENSCGRG00001004317	-	95	64.655	ENSSDUG00000007090	oscp1a	94	64.655	Seriola_dumerili
ENSCGRG00001004317	-	95	65.517	ENSSLDG00000000800	oscp1a	96	65.517	Seriola_lalandi_dorsalis
ENSCGRG00001004317	-	99	90.244	ENSSARG00000004211	LSM10	98	91.870	Sorex_araneus
ENSCGRG00001004317	-	95	66.379	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
ENSCGRG00001004317	-	98	90.833	ENSSSCG00000038916	LSM10	98	90.833	Sus_scrofa
ENSCGRG00001004317	-	99	71.901	ENSTGUG00000001600	-	99	71.901	Taeniopygia_guttata
ENSCGRG00001004317	-	99	71.901	ENSTGUG00000001602	-	99	71.901	Taeniopygia_guttata
ENSCGRG00001004317	-	95	68.103	ENSTRUG00000010531	oscp1a	94	68.103	Takifugu_rubripes
ENSCGRG00001004317	-	98	94.167	ENSTBEG00000016674	LSM10	98	94.167	Tupaia_belangeri
ENSCGRG00001004317	-	99	92.562	ENSUAMG00000020265	LSM10	98	92.562	Ursus_americanus
ENSCGRG00001004317	-	99	92.562	ENSUMAG00000001438	LSM10	56	92.562	Ursus_maritimus
ENSCGRG00001004317	-	99	95.041	ENSVVUG00000023209	LSM10	98	95.041	Vulpes_vulpes
ENSCGRG00001004317	-	99	69.421	ENSXETG00000027631	lsm10	98	69.421	Xenopus_tropicalis
ENSCGRG00001004317	-	94	64.348	ENSXCOG00000018776	oscp1a	72	64.348	Xiphophorus_couchianus
ENSCGRG00001004317	-	96	63.333	ENSXMAG00000019963	oscp1a	96	63.333	Xiphophorus_maculatus