EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001006336 (Gene tree)
Gene ID: -
Gene Symbol: Smg5
Alias: -
Full Name: Smg-5 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 32329 bases
Position: chrscaffold_7:3619793-3652121
Accession: 2447364
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001004892	EST1	PF10374.9	7.7e-24	1	1
ENSCGRP00001004892	EST1_DNA_bind	PF10373.9	4.5e-40	1	2
ENSCGRP00001004892	EST1_DNA_bind	PF10373.9	4.5e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001007430	-	7917	-	ENSCGRP00001004892	1017 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001006336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001006336's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001006336	Smg5	100	92.534	ENSG00000198952	SMG5	100	92.829	Homo_sapiens
ENSCGRG00001006336	Smg5	99	67.353	ENSAPOG00000019690	smg5	99	67.554	Acanthochromis_polyacanthus
ENSCGRG00001006336	Smg5	98	88.844	ENSAMEG00000014458	SMG5	100	89.045	Ailuropoda_melanoleuca
ENSCGRG00001006336	Smg5	99	64.961	ENSACIG00000001353	smg5	99	65.580	Amphilophus_citrinellus
ENSCGRG00001006336	Smg5	98	64.787	ENSAOCG00000019483	smg5	99	60.804	Amphiprion_ocellaris
ENSCGRG00001006336	Smg5	98	66.335	ENSAPEG00000022949	smg5	98	66.600	Amphiprion_percula
ENSCGRG00001006336	Smg5	99	65.764	ENSATEG00000005348	smg5	99	65.955	Anabas_testudineus
ENSCGRG00001006336	Smg5	98	77.994	ENSAPLG00000010263	SMG5	100	77.410	Anas_platyrhynchos
ENSCGRG00001006336	Smg5	100	92.240	ENSANAG00000032899	SMG5	100	92.534	Aotus_nancymaae
ENSCGRG00001006336	Smg5	99	64.768	ENSACLG00000009311	smg5	99	66.377	Astatotilapia_calliptera
ENSCGRG00001006336	Smg5	99	43.600	ENSBTAG00000021747	-	99	43.118	Bos_taurus
ENSCGRG00001006336	Smg5	100	91.356	ENSBTAG00000009435	SMG5	100	91.847	Bos_taurus
ENSCGRG00001006336	Smg5	100	92.141	ENSCJAG00000005684	SMG5	100	92.436	Callithrix_jacchus
ENSCGRG00001006336	Smg5	100	90.462	ENSCAFG00000016839	SMG5	100	90.855	Canis_familiaris
ENSCGRG00001006336	Smg5	100	90.462	ENSCAFG00020006061	SMG5	100	90.855	Canis_lupus_dingo
ENSCGRG00001006336	Smg5	99	43.860	ENSCHIG00000006323	-	99	43.275	Capra_hircus
ENSCGRG00001006336	Smg5	100	91.454	ENSCHIG00000007709	SMG5	100	91.945	Capra_hircus
ENSCGRG00001006336	Smg5	100	91.266	ENSTSYG00000004099	SMG5	100	91.462	Carlito_syrichta
ENSCGRG00001006336	Smg5	97	71.704	ENSCAPG00000003631	SMG5	100	72.690	Cavia_aperea
ENSCGRG00001006336	Smg5	100	92.043	ENSCPOG00000015696	SMG5	100	92.043	Cavia_porcellus
ENSCGRG00001006336	Smg5	100	91.847	ENSCCAG00000027409	SMG5	100	92.141	Cebus_capucinus
ENSCGRG00001006336	Smg5	100	92.731	ENSCATG00000030539	SMG5	100	93.124	Cercocebus_atys
ENSCGRG00001006336	Smg5	100	92.633	ENSCLAG00000003983	SMG5	100	92.633	Chinchilla_lanigera
ENSCGRG00001006336	Smg5	100	92.633	ENSCSAG00000002120	SMG5	100	93.026	Chlorocebus_sabaeus
ENSCGRG00001006336	Smg5	54	90.511	ENSCHOG00000008741	-	57	90.511	Choloepus_hoffmanni
ENSCGRG00001006336	Smg5	94	77.282	ENSCPBG00000025848	SMG5	100	77.665	Chrysemys_picta_bellii
ENSCGRG00001006336	Smg5	93	34.836	ENSCING00000008706	-	99	35.041	Ciona_intestinalis
ENSCGRG00001006336	Smg5	100	88.802	ENSCANG00000029208	SMG5	100	88.507	Colobus_angolensis_palliatus
ENSCGRG00001006336	Smg5	98	100.000	ENSCGRG00000005111	Smg5	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001006336	Smg5	99	64.516	ENSCSEG00000014220	smg5	99	65.686	Cynoglossus_semilaevis
ENSCGRG00001006336	Smg5	99	60.763	ENSCVAG00000000529	smg5	99	61.035	Cyprinodon_variegatus
ENSCGRG00001006336	Smg5	100	87.917	ENSDNOG00000000051	SMG5	100	88.114	Dasypus_novemcinctus
ENSCGRG00001006336	Smg5	92	36.518	ENSDNOG00000039862	-	100	35.881	Dasypus_novemcinctus
ENSCGRG00001006336	Smg5	100	91.552	ENSDORG00000010382	Smg5	100	91.159	Dipodomys_ordii
ENSCGRG00001006336	Smg5	75	33.962	FBgn0019890	Smg5	62	33.962	Drosophila_melanogaster
ENSCGRG00001006336	Smg5	82	93.204	ENSETEG00000010336	SMG5	91	93.204	Echinops_telfairi
ENSCGRG00001006336	Smg5	90	47.775	ENSEBUG00000003739	smg5	98	47.937	Eptatretus_burgeri
ENSCGRG00001006336	Smg5	100	92.141	ENSEASG00005019122	SMG5	100	92.043	Equus_asinus_asinus
ENSCGRG00001006336	Smg5	100	92.141	ENSECAG00000001389	SMG5	100	92.043	Equus_caballus
ENSCGRG00001006336	Smg5	72	96.542	ENSEEUG00000012690	SMG5	73	96.542	Erinaceus_europaeus
ENSCGRG00001006336	Smg5	99	65.024	ENSELUG00000012585	smg5	99	64.638	Esox_lucius
ENSCGRG00001006336	Smg5	100	89.686	ENSFCAG00000011783	SMG5	100	90.275	Felis_catus
ENSCGRG00001006336	Smg5	58	81.063	ENSFALG00000001166	-	99	80.399	Ficedula_albicollis
ENSCGRG00001006336	Smg5	98	90.332	ENSFDAG00000017388	SMG5	100	90.131	Fukomys_damarensis
ENSCGRG00001006336	Smg5	97	62.500	ENSFHEG00000013939	smg5	95	68.690	Fundulus_heteroclitus
ENSCGRG00001006336	Smg5	99	77.531	ENSGALG00000029918	-	100	76.901	Gallus_gallus
ENSCGRG00001006336	Smg5	72	76.291	ENSGAFG00000021691	smg5	97	68.051	Gambusia_affinis
ENSCGRG00001006336	Smg5	100	78.578	ENSGAGG00000016131	SMG5	100	78.802	Gopherus_agassizii
ENSCGRG00001006336	Smg5	100	92.240	ENSGGOG00000010932	SMG5	100	92.534	Gorilla_gorilla
ENSCGRG00001006336	Smg5	99	65.125	ENSHBUG00000008654	smg5	99	65.484	Haplochromis_burtoni
ENSCGRG00001006336	Smg5	100	89.686	ENSHGLG00000019152	SMG5	100	89.686	Heterocephalus_glaber_female
ENSCGRG00001006336	Smg5	90	89.583	ENSHGLG00100015948	SMG5	99	89.583	Heterocephalus_glaber_male
ENSCGRG00001006336	Smg5	87	71.703	ENSHCOG00000010229	smg5	92	71.463	Hippocampus_comes
ENSCGRG00001006336	Smg5	99	62.591	ENSIPUG00000006624	Smg5	99	62.591	Ictalurus_punctatus
ENSCGRG00001006336	Smg5	100	92.829	ENSSTOG00000001780	SMG5	100	93.124	Ictidomys_tridecemlineatus
ENSCGRG00001006336	Smg5	100	92.451	ENSJJAG00000022763	Smg5	100	92.647	Jaculus_jaculus
ENSCGRG00001006336	Smg5	99	65.130	ENSLBEG00000002145	smg5	99	66.249	Labrus_bergylta
ENSCGRG00001006336	Smg5	100	64.415	ENSLACG00000010521	SMG5	100	64.415	Latimeria_chalumnae
ENSCGRG00001006336	Smg5	100	90.373	ENSLAFG00000006241	SMG5	100	90.079	Loxodonta_africana
ENSCGRG00001006336	Smg5	100	92.633	ENSMFAG00000045357	SMG5	100	93.026	Macaca_fascicularis
ENSCGRG00001006336	Smg5	100	92.633	ENSMMUG00000000090	SMG5	100	93.026	Macaca_mulatta
ENSCGRG00001006336	Smg5	100	92.534	ENSMNEG00000044425	SMG5	100	92.927	Macaca_nemestrina
ENSCGRG00001006336	Smg5	100	86.301	ENSMLEG00000041192	SMG5	100	86.301	Mandrillus_leucophaeus
ENSCGRG00001006336	Smg5	99	61.091	ENSMAMG00000010683	smg5	100	60.681	Mastacembelus_armatus
ENSCGRG00001006336	Smg5	99	63.820	ENSMZEG00005015815	smg5	99	64.203	Maylandia_zebra
ENSCGRG00001006336	Smg5	63	58.511	ENSMZEG00005016543	smg5	100	60.152	Maylandia_zebra
ENSCGRG00001006336	Smg5	55	44.194	ENSMAUG00000000043	-	96	46.466	Mesocricetus_auratus
ENSCGRG00001006336	Smg5	100	97.837	ENSMAUG00000010381	Smg5	100	97.837	Mesocricetus_auratus
ENSCGRG00001006336	Smg5	100	92.829	ENSMICG00000002257	SMG5	100	93.124	Microcebus_murinus
ENSCGRG00001006336	Smg5	100	97.350	ENSMOCG00000016590	Smg5	100	97.350	Microtus_ochrogaster
ENSCGRG00001006336	Smg5	99	58.550	ENSMMOG00000017199	smg5	99	60.000	Mola_mola
ENSCGRG00001006336	Smg5	93	39.024	ENSMODG00000004532	-	83	38.933	Monodelphis_domestica
ENSCGRG00001006336	Smg5	80	38.571	ENSMODG00000010675	-	84	38.992	Monodelphis_domestica
ENSCGRG00001006336	Smg5	97	35.108	ENSMODG00000004511	-	99	34.650	Monodelphis_domestica
ENSCGRG00001006336	Smg5	74	40.909	ENSMODG00000004735	-	86	40.909	Monodelphis_domestica
ENSCGRG00001006336	Smg5	87	87.514	ENSMODG00000016901	SMG5	98	87.177	Monodelphis_domestica
ENSCGRG00001006336	Smg5	99	60.430	ENSMALG00000010375	smg5	99	60.823	Monopterus_albus
ENSCGRG00001006336	Smg5	100	97.542	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCGRG00001006336	Smg5	100	97.738	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCGRG00001006336	Smg5	100	97.350	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCGRG00001006336	Smg5	100	97.738	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCGRG00001006336	Smg5	94	88.328	ENSMPUG00000004546	SMG5	100	88.749	Mustela_putorius_furo
ENSCGRG00001006336	Smg5	100	91.577	ENSMLUG00000008518	SMG5	100	91.675	Myotis_lucifugus
ENSCGRG00001006336	Smg5	100	93.615	ENSNGAG00000020706	Smg5	100	93.811	Nannospalax_galili
ENSCGRG00001006336	Smg5	98	44.044	ENSNGAG00000012101	-	98	44.158	Nannospalax_galili
ENSCGRG00001006336	Smg5	96	63.105	ENSNBRG00000004332	smg5	98	63.646	Neolamprologus_brichardi
ENSCGRG00001006336	Smg5	100	92.043	ENSNLEG00000012439	SMG5	100	92.338	Nomascus_leucogenys
ENSCGRG00001006336	Smg5	100	85.560	ENSMEUG00000012834	SMG5	100	85.265	Notamacropus_eugenii
ENSCGRG00001006336	Smg5	100	90.668	ENSOPRG00000009152	SMG5	100	90.766	Ochotona_princeps
ENSCGRG00001006336	Smg5	100	91.650	ENSODEG00000012237	SMG5	100	91.650	Octodon_degus
ENSCGRG00001006336	Smg5	89	40.546	ENSOCUG00000023338	-	99	40.328	Oryctolagus_cuniculus
ENSCGRG00001006336	Smg5	98	91.952	ENSOCUG00000012886	SMG5	100	92.153	Oryctolagus_cuniculus
ENSCGRG00001006336	Smg5	99	60.162	ENSORLG00000016239	smg5	99	61.601	Oryzias_latipes
ENSCGRG00001006336	Smg5	99	63.840	ENSORLG00020013127	smg5	99	65.000	Oryzias_latipes_hni
ENSCGRG00001006336	Smg5	99	63.946	ENSORLG00015019014	smg5	99	65.689	Oryzias_latipes_hsok
ENSCGRG00001006336	Smg5	82	58.432	ENSOMEG00000021330	smg5	92	60.258	Oryzias_melastigma
ENSCGRG00001006336	Smg5	100	90.963	ENSOGAG00000004966	SMG5	100	91.257	Otolemur_garnettii
ENSCGRG00001006336	Smg5	100	91.356	ENSOARG00000005778	SMG5	100	91.847	Ovis_aries
ENSCGRG00001006336	Smg5	99	43.580	ENSOARG00000011963	-	99	43.301	Ovis_aries
ENSCGRG00001006336	Smg5	100	92.240	ENSPPAG00000011996	SMG5	100	92.534	Pan_paniscus
ENSCGRG00001006336	Smg5	98	89.537	ENSPPRG00000011901	SMG5	100	90.131	Panthera_pardus
ENSCGRG00001006336	Smg5	99	81.791	ENSPTIG00000007892	SMG5	98	82.912	Panthera_tigris_altaica
ENSCGRG00001006336	Smg5	100	92.436	ENSPTRG00000049282	-	100	92.731	Pan_troglodytes
ENSCGRG00001006336	Smg5	100	92.436	ENSPTRG00000023925	SMG5	100	92.731	Pan_troglodytes
ENSCGRG00001006336	Smg5	100	92.731	ENSPANG00000011201	SMG5	100	93.124	Papio_anubis
ENSCGRG00001006336	Smg5	99	65.664	ENSPKIG00000009402	smg5	99	66.569	Paramormyrops_kingsleyae
ENSCGRG00001006336	Smg5	98	79.167	ENSPSIG00000015198	SMG5	100	79.365	Pelodiscus_sinensis
ENSCGRG00001006336	Smg5	99	61.270	ENSPMGG00000010465	smg5	99	59.381	Periophthalmus_magnuspinnatus
ENSCGRG00001006336	Smg5	56	45.804	ENSPEMG00000010022	-	95	44.930	Peromyscus_maniculatus_bairdii
ENSCGRG00001006336	Smg5	100	98.623	ENSPEMG00000001819	Smg5	100	98.623	Peromyscus_maniculatus_bairdii
ENSCGRG00001006336	Smg5	99	50.674	ENSPMAG00000000410	smg5	100	50.522	Petromyzon_marinus
ENSCGRG00001006336	Smg5	100	86.850	ENSPCIG00000018938	SMG5	100	86.555	Phascolarctos_cinereus
ENSCGRG00001006336	Smg5	99	65.767	ENSPMEG00000014105	smg5	99	65.992	Poecilia_mexicana
ENSCGRG00001006336	Smg5	93	69.213	ENSPREG00000017713	smg5	99	62.410	Poecilia_reticulata
ENSCGRG00001006336	Smg5	100	92.436	ENSPPYG00000000723	SMG5	100	92.731	Pongo_abelii
ENSCGRG00001006336	Smg5	75	95.580	ENSPCAG00000008412	SMG5	81	95.580	Procavia_capensis
ENSCGRG00001006336	Smg5	100	92.534	ENSPCOG00000004741	SMG5	100	92.829	Propithecus_coquereli
ENSCGRG00001006336	Smg5	100	82.203	ENSPVAG00000016748	SMG5	100	82.515	Pteropus_vampyrus
ENSCGRG00001006336	Smg5	99	58.437	ENSPNYG00000013397	smg5	99	58.563	Pundamilia_nyererei
ENSCGRG00001006336	Smg5	99	62.204	ENSPNAG00000028363	smg5	99	62.727	Pygocentrus_nattereri
ENSCGRG00001006336	Smg5	100	97.837	ENSRNOG00000019590	Smg5	100	97.837	Rattus_norvegicus
ENSCGRG00001006336	Smg5	100	92.436	ENSRBIG00000027428	SMG5	100	92.829	Rhinopithecus_bieti
ENSCGRG00001006336	Smg5	100	92.338	ENSRROG00000030035	SMG5	100	92.731	Rhinopithecus_roxellana
ENSCGRG00001006336	Smg5	100	92.043	ENSSBOG00000033339	SMG5	100	92.338	Saimiri_boliviensis_boliviensis
ENSCGRG00001006336	Smg5	99	33.333	ENSSHAG00000009572	-	78	42.893	Sarcophilus_harrisii
ENSCGRG00001006336	Smg5	64	40.351	ENSSHAG00000000935	-	81	40.854	Sarcophilus_harrisii
ENSCGRG00001006336	Smg5	85	39.793	ENSSHAG00000000561	-	86	40.157	Sarcophilus_harrisii
ENSCGRG00001006336	Smg5	98	86.300	ENSSHAG00000014163	SMG5	100	86.000	Sarcophilus_harrisii
ENSCGRG00001006336	Smg5	99	66.084	ENSSFOG00015024175	smg5	99	65.571	Scleropages_formosus
ENSCGRG00001006336	Smg5	99	60.641	ENSSMAG00000013059	smg5	99	61.922	Scophthalmus_maximus
ENSCGRG00001006336	Smg5	99	59.526	ENSSDUG00000007122	smg5	99	61.402	Seriola_dumerili
ENSCGRG00001006336	Smg5	99	60.124	ENSSLDG00000011418	smg5	99	61.710	Seriola_lalandi_dorsalis
ENSCGRG00001006336	Smg5	90	77.802	ENSSARG00000012484	SMG5	100	77.258	Sorex_araneus
ENSCGRG00001006336	Smg5	94	77.048	ENSSPUG00000002260	SMG5	100	76.744	Sphenodon_punctatus
ENSCGRG00001006336	Smg5	91	76.179	ENSSPAG00000014266	smg5	98	65.500	Stegastes_partitus
ENSCGRG00001006336	Smg5	100	92.534	ENSSSCG00000006490	-	100	93.026	Sus_scrofa
ENSCGRG00001006336	Smg5	99	71.752	ENSSSCG00000039308	-	100	71.850	Sus_scrofa
ENSCGRG00001006336	Smg5	99	79.566	ENSTGUG00000003748	-	100	79.532	Taeniopygia_guttata
ENSCGRG00001006336	Smg5	99	64.860	ENSTRUG00000012580	smg5	99	64.990	Takifugu_rubripes
ENSCGRG00001006336	Smg5	99	65.116	ENSTNIG00000010303	smg5	99	65.116	Tetraodon_nigroviridis
ENSCGRG00001006336	Smg5	60	99.507	ENSTBEG00000002777	SMG5	60	99.507	Tupaia_belangeri
ENSCGRG00001006336	Smg5	100	87.721	ENSTTRG00000001401	SMG5	100	86.935	Tursiops_truncatus
ENSCGRG00001006336	Smg5	100	89.293	ENSUAMG00000013721	SMG5	100	89.774	Ursus_americanus
ENSCGRG00001006336	Smg5	98	85.040	ENSUMAG00000018041	SMG5	97	85.442	Ursus_maritimus
ENSCGRG00001006336	Smg5	98	82.075	ENSVPAG00000009446	SMG5	99	82.075	Vicugna_pacos
ENSCGRG00001006336	Smg5	100	90.864	ENSVVUG00000005887	SMG5	100	90.757	Vulpes_vulpes
ENSCGRG00001006336	Smg5	77	65.031	ENSXETG00000033791	SMG5	99	64.654	Xenopus_tropicalis
ENSCGRG00001006336	Smg5	60	75.231	ENSXCOG00000004379	smg5	96	70.330	Xiphophorus_couchianus
ENSCGRG00001006336	Smg5	99	65.823	ENSXMAG00000013499	smg5	99	66.181	Xiphophorus_maculatus