EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCGRG00001006858 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Cricetulus_griseus_chok1gshd
Status
putative
Strand
Plus strand
Length
19348 bases
Position
chrscaffold_11:28723246-28742593
Accession
100767364
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCGRP00001005249Smg4_UPF3PF03467.151.2e-5211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCGRT00001008038-1413-ENSCGRP00001005249470 (aa)XP_007610144UPI000454C0D0
Gene Model
Click here to download ENSCGRG00001006858's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001006858's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCGRG00001006858-7599.430ENSCGRG00001013643-9599.430
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCGRG00001006858-8550.485ENSG00000169062UPF3A5552.518Homo_sapiens
ENSCGRG00001006858-10083.263ENSG00000125351UPF3B9687.500Homo_sapiens
ENSCGRG00001006858-9455.088ENSAPOG00000012775upf3b9454.867Acanthochromis_polyacanthus
ENSCGRG00001006858-10083.686ENSAMEG00000000163UPF3B10083.475Ailuropoda_melanoleuca
ENSCGRG00001006858-9047.597ENSAMEG00000004259UPF3A5752.060Ailuropoda_melanoleuca
ENSCGRG00001006858-9451.648ENSACIG00000013582upf3b6755.963Amphilophus_citrinellus
ENSCGRG00001006858-9453.915ENSAOCG00000000706upf3b9453.540Amphiprion_ocellaris
ENSCGRG00001006858-9454.810ENSAPEG00000005545upf3b9454.566Amphiprion_percula
ENSCGRG00001006858-9456.236ENSATEG00000018742upf3b9455.088Anabas_testudineus
ENSCGRG00001006858-9165.675ENSACAG00000003625UPF3B9963.674Anolis_carolinensis
ENSCGRG00001006858-8248.601ENSACAG00000001540UPF3A9251.134Anolis_carolinensis
ENSCGRG00001006858-10083.475ENSANAG00000021894-10088.476Aotus_nancymaae
ENSCGRG00001006858-10080.932ENSANAG00000025598-10078.602Aotus_nancymaae
ENSCGRG00001006858-8544.039ENSANAG00000021713UPF3A5452.747Aotus_nancymaae
ENSCGRG00001006858-5765.428ENSANAG00000033169-10064.234Aotus_nancymaae
ENSCGRG00001006858-9455.385ENSACLG00000001649upf3b9454.185Astatotilapia_calliptera
ENSCGRG00001006858-5759.786ENSAMXG00000000199upf3b8857.447Astyanax_mexicanus
ENSCGRG00001006858-6989.219ENSBTAG00000035615UPF3B10089.219Bos_taurus
ENSCGRG00001006858-8549.272ENSCJAG00000019102UPF3A5453.875Callithrix_jacchus
ENSCGRG00001006858-10082.839ENSCJAG00000004975UPF3B10088.104Callithrix_jacchus
ENSCGRG00001006858-10080.619ENSCAFG00000018426UPF3B10081.345Canis_familiaris
ENSCGRG00001006858-9048.284ENSCAFG00000006504UPF3A5354.789Canis_familiaris
ENSCGRG00001006858-10080.720ENSCAFG00020004074UPF3B10079.873Canis_lupus_dingo
ENSCGRG00001006858-9048.513ENSCAFG00020014268UPF3A5255.172Canis_lupus_dingo
ENSCGRG00001006858-9060.422ENSCHIG00000011454-9856.291Capra_hircus
ENSCGRG00001006858-10080.412ENSCHIG00000000247-10080.206Capra_hircus
ENSCGRG00001006858-9879.958ENSCHIG00000018011-10088.848Capra_hircus
ENSCGRG00001006858-10083.898ENSTSYG00000014690UPF3B10084.058Carlito_syrichta
ENSCGRG00001006858-7167.606ENSCCAG00000021964-10061.594Cebus_capucinus
ENSCGRG00001006858-9952.258ENSCCAG00000029813-8761.852Cebus_capucinus
ENSCGRG00001006858-8550.000ENSCCAG00000018406UPF3A5553.480Cebus_capucinus
ENSCGRG00001006858-10083.051ENSCATG00000017506UPF3B10088.848Cercocebus_atys
ENSCGRG00001006858-8949.070ENSCATG00000029733UPF3A5753.237Cercocebus_atys
ENSCGRG00001006858-10082.627ENSCLAG00000003260UPF3B10082.415Chinchilla_lanigera
ENSCGRG00001006858-10081.031ENSCSAG00000018348UPF3B10080.825Chlorocebus_sabaeus
ENSCGRG00001006858-9048.853ENSCSAG00000017388UPF3A5752.669Chlorocebus_sabaeus
ENSCGRG00001006858-9961.169ENSCPBG00000020685UPF3B9960.543Chrysemys_picta_bellii
ENSCGRG00001006858-7188.848ENSCANG00000029220UPF3B10088.848Colobus_angolensis_palliatus
ENSCGRG00001006858-8999.761ENSCGRG00000007627Upf3b10099.761Cricetulus_griseus_crigri
ENSCGRG00001006858-9351.893ENSCSEG00000002046upf3b6658.133Cynoglossus_semilaevis
ENSCGRG00001006858-8355.500ENSCVAG00000005030upf3b9550.110Cyprinodon_variegatus
ENSCGRG00001006858-8457.108ENSDARG00000000489upf3b8757.598Danio_rerio
ENSCGRG00001006858-10080.412ENSDNOG00000008665UPF3B10080.206Dasypus_novemcinctus
ENSCGRG00001006858-7850.674ENSDNOG00000034391UPF3A6848.397Dasypus_novemcinctus
ENSCGRG00001006858-10083.475ENSDORG00000006077Upf3b10082.627Dipodomys_ordii
ENSCGRG00001006858-8443.099ENSETEG00000010110UPF3A8536.952Echinops_telfairi
ENSCGRG00001006858-9981.529ENSEASG00005012919UPF3B10081.316Equus_asinus_asinus
ENSCGRG00001006858-8850.119ENSEASG00005021884UPF3A8242.611Equus_asinus_asinus
ENSCGRG00001006858-9981.529ENSECAG00000016947UPF3B10081.316Equus_caballus
ENSCGRG00001006858-8850.238ENSECAG00000017141UPF3A5055.833Equus_caballus
ENSCGRG00001006858-8253.589ENSELUG00000020389upf3b6559.394Esox_lucius
ENSCGRG00001006858-10082.415ENSFCAG00000004388UPF3B10083.333Felis_catus
ENSCGRG00001006858-9961.057ENSFALG00000001569UPF3B9960.990Ficedula_albicollis
ENSCGRG00001006858-10083.475ENSFDAG00000018869UPF3B10083.263Fukomys_damarensis
ENSCGRG00001006858-9451.794ENSFHEG00000017895upf3b9352.573Fundulus_heteroclitus
ENSCGRG00001006858-9453.437ENSGMOG00000001621upf3b9353.437Gadus_morhua
ENSCGRG00001006858-9962.218ENSGALG00000008618UPF3B9964.241Gallus_gallus
ENSCGRG00001006858-8456.171ENSGAFG00000000829upf3b9454.305Gambusia_affinis
ENSCGRG00001006858-9254.709ENSGACG00000017435upf3b9464.706Gasterosteus_aculeatus
ENSCGRG00001006858-9963.466ENSGAGG00000001219UPF3B9962.839Gopherus_agassizii
ENSCGRG00001006858-8550.122ENSGGOG00000015428UPF3A5552.518Gorilla_gorilla
ENSCGRG00001006858-10083.263ENSGGOG00000023995UPF3B10088.848Gorilla_gorilla
ENSCGRG00001006858-9455.385ENSHBUG00000017393upf3b9454.185Haplochromis_burtoni
ENSCGRG00001006858-8675.124ENSHGLG00000011189-9575.622Heterocephalus_glaber_female
ENSCGRG00001006858-10082.627ENSHGLG00000019582-10082.415Heterocephalus_glaber_female
ENSCGRG00001006858-8675.373ENSHGLG00100001889-9574.627Heterocephalus_glaber_male
ENSCGRG00001006858-10080.932ENSHGLG00100002042-10081.568Heterocephalus_glaber_male
ENSCGRG00001006858-9454.746ENSHCOG00000017004upf3b9354.102Hippocampus_comes
ENSCGRG00001006858-9154.875ENSIPUG00000019249upf3b9851.339Ictalurus_punctatus
ENSCGRG00001006858-10083.263ENSSTOG00000001101UPF3B10083.051Ictidomys_tridecemlineatus
ENSCGRG00001006858-10089.831ENSJJAG00000000053Upf3b10089.831Jaculus_jaculus
ENSCGRG00001006858-9453.215ENSKMAG00000020300upf3b9451.828Kryptolebias_marmoratus
ENSCGRG00001006858-6064.014ENSLBEG00000028689upf3b5964.014Labrus_bergylta
ENSCGRG00001006858-9060.274ENSLACG00000008691UPF3B10056.237Latimeria_chalumnae
ENSCGRG00001006858-6137.942ENSLACG00000006645UPF3A6769.231Latimeria_chalumnae
ENSCGRG00001006858-5173.140ENSLOCG00000015238upf3b9355.399Lepisosteus_oculatus
ENSCGRG00001006858-8452.323ENSLOCG00000002665upf3a8447.160Lepisosteus_oculatus
ENSCGRG00001006858-8345.293ENSLAFG00000023358UPF3A9344.529Loxodonta_africana
ENSCGRG00001006858-10081.780ENSLAFG00000001267UPF3B10081.568Loxodonta_africana
ENSCGRG00001006858-10083.051ENSMFAG00000045414UPF3B10088.848Macaca_fascicularis
ENSCGRG00001006858-8250.126ENSMMUG00000007449UPF3A5059.031Macaca_mulatta
ENSCGRG00001006858-10083.051ENSMMUG00000020222UPF3B10088.848Macaca_mulatta
ENSCGRG00001006858-10083.051ENSMNEG00000039794UPF3B10088.848Macaca_nemestrina
ENSCGRG00001006858-8749.173ENSMLEG00000014726UPF3A5557.940Mandrillus_leucophaeus
ENSCGRG00001006858-10083.051ENSMLEG00000010999UPF3B10088.848Mandrillus_leucophaeus
ENSCGRG00001006858-9455.604ENSMZEG00005007871upf3b9454.405Maylandia_zebra
ENSCGRG00001006858-8161.616ENSMGAG00000007728UPF3B9963.590Meleagris_gallopavo
ENSCGRG00001006858-8550.000ENSMGAG00000014837UPF3A9849.639Meleagris_gallopavo
ENSCGRG00001006858-10090.446ENSMAUG00000008705Upf3b10090.446Mesocricetus_auratus
ENSCGRG00001006858-6988.889ENSMICG00000001743UPF3B10088.889Microcebus_murinus
ENSCGRG00001006858-10088.454ENSMOCG00000017893Upf3b10087.835Microtus_ochrogaster
ENSCGRG00001006858-8356.818ENSMMOG00000004183upf3b9454.260Mola_mola
ENSCGRG00001006858-8354.726ENSMODG00000003159UPF3A9053.483Monodelphis_domestica
ENSCGRG00001006858-8970.824ENSMODG00000010232UPF3B9970.824Monodelphis_domestica
ENSCGRG00001006858-7058.788ENSMALG00000008042upf3b9853.700Monopterus_albus
ENSCGRG00001006858-10091.949MGP_CAROLIEiJ_G0032999Upf3b10091.949Mus_caroli
ENSCGRG00001006858-10092.585ENSMUSG00000036572Upf3b10092.585Mus_musculus
ENSCGRG00001006858-10090.890MGP_PahariEiJ_G0031543Upf3b10090.890Mus_pahari
ENSCGRG00001006858-10092.585MGP_SPRETEiJ_G0034152Upf3b10092.585Mus_spretus
ENSCGRG00001006858-9883.080ENSMPUG00000001531UPF3B10082.213Mustela_putorius_furo
ENSCGRG00001006858-8350.976ENSMLUG00000015905UPF3A9345.232Myotis_lucifugus
ENSCGRG00001006858-10084.322ENSMLUG00000010821UPF3B10083.051Myotis_lucifugus
ENSCGRG00001006858-10088.136ENSNGAG00000008231Upf3b10088.136Nannospalax_galili
ENSCGRG00001006858-8550.000ENSNLEG00000007563UPF3A5353.933Nomascus_leucogenys
ENSCGRG00001006858-9782.789ENSNLEG00000014897UPF3B10082.627Nomascus_leucogenys
ENSCGRG00001006858-6682.581ENSMEUG00000015615UPF3B8182.692Notamacropus_eugenii
ENSCGRG00001006858-10077.966ENSODEG00000002186-10077.542Octodon_degus
ENSCGRG00001006858-10052.893ENSONIG00000002536upf3b10053.814Oreochromis_niloticus
ENSCGRG00001006858-7945.288ENSOANG00000006985-5459.565Ornithorhynchus_anatinus
ENSCGRG00001006858-8861.072ENSOANG00000002594-9960.839Ornithorhynchus_anatinus
ENSCGRG00001006858-10082.268ENSOCUG00000010213UPF3B10082.062Oryctolagus_cuniculus
ENSCGRG00001006858-9054.756ENSORLG00000001026upf3b9752.350Oryzias_latipes
ENSCGRG00001006858-9054.292ENSORLG00020003758upf3b9751.923Oryzias_latipes_hni
ENSCGRG00001006858-8450.367ENSORLG00020014317upf3a8249.275Oryzias_latipes_hni
ENSCGRG00001006858-9054.756ENSORLG00015012954upf3b9752.350Oryzias_latipes_hsok
ENSCGRG00001006858-8755.529ENSOMEG00000014736upf3b9155.450Oryzias_melastigma
ENSCGRG00001006858-9772.294ENSOGAG00000033003-10072.511Otolemur_garnettii
ENSCGRG00001006858-10083.898ENSOGAG00000004643-10083.686Otolemur_garnettii
ENSCGRG00001006858-9065.882ENSOARG00000007869-9961.882Ovis_aries
ENSCGRG00001006858-9048.090ENSOARG00000009004UPF3A5758.781Ovis_aries
ENSCGRG00001006858-10079.918ENSOARG00000016051-10079.713Ovis_aries
ENSCGRG00001006858-10083.263ENSPPAG00000040390UPF3B10088.848Pan_paniscus
ENSCGRG00001006858-8550.243ENSPPAG00000042267UPF3A5559.567Pan_paniscus
ENSCGRG00001006858-10084.322ENSPPRG00000023536UPF3B10084.110Panthera_pardus
ENSCGRG00001006858-10081.405ENSPTIG00000015264UPF3B10090.335Panthera_tigris_altaica
ENSCGRG00001006858-10083.263ENSPTRG00000022228UPF3B10088.848Pan_troglodytes
ENSCGRG00001006858-8550.243ENSPTRG00000006073UPF3A5459.567Pan_troglodytes
ENSCGRG00001006858-10083.051ENSPANG00000000900UPF3B10088.848Papio_anubis
ENSCGRG00001006858-8849.412ENSPANG00000004346UPF3A5752.500Papio_anubis
ENSCGRG00001006858-9154.566ENSPKIG00000019226upf3b7474.783Paramormyrops_kingsleyae
ENSCGRG00001006858-8551.878ENSPSIG00000007468UPF3A9851.667Pelodiscus_sinensis
ENSCGRG00001006858-5571.483ENSPSIG00000005833UPF3B8472.803Pelodiscus_sinensis
ENSCGRG00001006858-5963.309ENSPMGG00000016067upf3b9563.538Periophthalmus_magnuspinnatus
ENSCGRG00001006858-10091.332ENSPEMG00000012352Upf3b10091.332Peromyscus_maniculatus_bairdii
ENSCGRG00001006858-9266.966ENSPCIG00000028914UPF3B9663.617Phascolarctos_cinereus
ENSCGRG00001006858-6758.065ENSPCIG00000019590-7266.061Phascolarctos_cinereus
ENSCGRG00001006858-5767.089ENSPLAG00000011960upf3a6470.909Poecilia_latipinna
ENSCGRG00001006858-9453.812ENSPLAG00000019922upf3b9454.967Poecilia_latipinna
ENSCGRG00001006858-9453.812ENSPLAG00000005105upf3b9454.967Poecilia_latipinna
ENSCGRG00001006858-9453.812ENSPMEG00000023532upf3b9454.967Poecilia_mexicana
ENSCGRG00001006858-8550.243ENSPPYG00000005536UPF3A5353.184Pongo_abelii
ENSCGRG00001006858-6788.519ENSPPYG00000020675-10088.519Pongo_abelii
ENSCGRG00001006858-10080.000ENSPCAG00000009464UPF3B10079.794Procavia_capensis
ENSCGRG00001006858-5153.279ENSPCAG00000013124UPF3A5450.554Procavia_capensis
ENSCGRG00001006858-10083.721ENSPCOG00000021960UPF3B10088.889Propithecus_coquereli
ENSCGRG00001006858-10071.134ENSPVAG00000014075UPF3B10069.278Pteropus_vampyrus
ENSCGRG00001006858-8545.966ENSPVAG00000005656UPF3A8639.450Pteropus_vampyrus
ENSCGRG00001006858-9453.880ENSPNYG00000009846upf3b9454.646Pundamilia_nyererei
ENSCGRG00001006858-9155.180ENSPNAG00000021528upf3b8664.103Pygocentrus_nattereri
ENSCGRG00001006858-10092.161ENSRNOG00000039994Upf3b10092.161Rattus_norvegicus
ENSCGRG00001006858-8748.578ENSRBIG00000034007UPF3A6849.191Rhinopithecus_bieti
ENSCGRG00001006858-8282.124ENSRBIG00000037219UPF3B10081.865Rhinopithecus_bieti
ENSCGRG00001006858-10083.263ENSRROG00000041031UPF3B10088.848Rhinopithecus_roxellana
ENSCGRG00001006858-8749.052ENSRROG00000012212UPF3A5952.536Rhinopithecus_roxellana
ENSCGRG00001006858-10083.686ENSSBOG00000019740UPF3B10089.219Saimiri_boliviensis_boliviensis
ENSCGRG00001006858-8573.399ENSSHAG00000008634UPF3B9667.686Sarcophilus_harrisii
ENSCGRG00001006858-8353.846ENSSHAG00000009895UPF3A9252.605Sarcophilus_harrisii
ENSCGRG00001006858-9157.437ENSSFOG00015005614upf3b9455.069Scleropages_formosus
ENSCGRG00001006858-9355.111ENSSMAG00000012913upf3b8466.176Scophthalmus_maximus
ENSCGRG00001006858-9042.923ENSSDUG00000009680upf3a6770.642Seriola_dumerili
ENSCGRG00001006858-8357.037ENSSDUG00000005682upf3b9452.954Seriola_dumerili
ENSCGRG00001006858-9453.319ENSSLDG00000003130upf3b9452.954Seriola_lalandi_dorsalis
ENSCGRG00001006858-8975.688ENSSARG00000004147UPF3B10077.880Sorex_araneus
ENSCGRG00001006858-8137.437ENSSARG00000007262UPF3A9236.224Sorex_araneus
ENSCGRG00001006858-9962.733ENSSPUG00000013082UPF3B9961.698Sphenodon_punctatus
ENSCGRG00001006858-9453.437ENSSPAG00000009989upf3b9454.286Stegastes_partitus
ENSCGRG00001006858-8647.837ENSSSCG00000024679UPF3A6152.453Sus_scrofa
ENSCGRG00001006858-10083.475ENSSSCG00000012617UPF3B10083.263Sus_scrofa
ENSCGRG00001006858-8454.074ENSTGUG00000009493UPF3A9953.827Taeniopygia_guttata
ENSCGRG00001006858-8966.667ENSTGUG00000003413UPF3B9966.900Taeniopygia_guttata
ENSCGRG00001006858-8358.897ENSTRUG00000010645upf3b9553.898Takifugu_rubripes
ENSCGRG00001006858-8453.980ENSTNIG00000015763upf3b8752.357Tetraodon_nigroviridis
ENSCGRG00001006858-6741.049ENSTBEG00000017186-6042.289Tupaia_belangeri
ENSCGRG00001006858-10067.835ENSTBEG00000003229UPF3B10067.629Tupaia_belangeri
ENSCGRG00001006858-10081.780ENSUAMG00000024565UPF3B10081.780Ursus_americanus
ENSCGRG00001006858-9376.344ENSUMAG00000002150UPF3B9976.774Ursus_maritimus
ENSCGRG00001006858-8482.039ENSVPAG00000009971UPF3B10081.796Vicugna_pacos
ENSCGRG00001006858-8449.020ENSVVUG00000013538UPF3A5054.217Vulpes_vulpes
ENSCGRG00001006858-10080.932ENSVVUG00000011594UPF3B9787.019Vulpes_vulpes
ENSCGRG00001006858-8447.277ENSXETG00000002572upf3a9044.258Xenopus_tropicalis
ENSCGRG00001006858-8556.068ENSXETG00000007440upf3b8466.507Xenopus_tropicalis
ENSCGRG00001006858-9451.794ENSXCOG00000016586upf3b9763.507Xiphophorus_couchianus
ENSCGRG00001006858-9455.034ENSXMAG00000013680upf3b9454.525Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us