EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001010776 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 79916 bases
Position: chrscaffold_11:20958478-21038393
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001008616	ResIII	PF04851.15	1.6e-11	1	1
ENSCGRP00001008649	ResIII	PF04851.15	1.6e-11	1	1
ENSCGRP00001008649	DEAD	PF00270.29	5.4e-07	1	1
ENSCGRP00001008616	DEAD	PF00270.29	5.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001012745	-	6029	-	ENSCGRP00001008616	1059 (aa)	-	-
ENSCGRT00001012780	-	3168	-	ENSCGRP00001008649	1055 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001010776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001010776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001010776	Smarca1	55	41.852	ENSCGRG00001021624	Chd1l	62	42.732
ENSCGRG00001010776	Smarca1	93	84.343	ENSCGRG00001012719	Smarca5	94	84.343
ENSCGRG00001010776	Smarca1	50	48.207	ENSCGRG00001017410	Hells	65	48.207

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001010776	Smarca1	98	96.343	ENSG00000102038	SMARCA1	100	95.940	Homo_sapiens
ENSCGRG00001010776	Smarca1	92	82.684	ENSAPOG00000016035	smarca5	98	83.260	Acanthochromis_polyacanthus
ENSCGRG00001010776	Smarca1	100	93.371	ENSAMEG00000015218	SMARCA1	100	92.997	Ailuropoda_melanoleuca
ENSCGRG00001010776	Smarca1	85	83.167	ENSACIG00000016982	smarca5	99	83.259	Amphilophus_citrinellus
ENSCGRG00001010776	Smarca1	92	82.684	ENSAOCG00000015578	smarca5	95	81.837	Amphiprion_ocellaris
ENSCGRG00001010776	Smarca1	92	82.684	ENSAPEG00000011117	smarca5	99	83.137	Amphiprion_percula
ENSCGRG00001010776	Smarca1	97	78.571	ENSATEG00000012894	smarca5	93	83.738	Anabas_testudineus
ENSCGRG00001010776	Smarca1	93	91.548	ENSAPLG00000013149	SMARCA1	100	91.548	Anas_platyrhynchos
ENSCGRG00001010776	Smarca1	97	88.555	ENSACAG00000011376	SMARCA1	95	90.763	Anolis_carolinensis
ENSCGRG00001010776	Smarca1	98	91.242	ENSANAG00000023098	SMARCA1	100	90.935	Aotus_nancymaae
ENSCGRG00001010776	Smarca1	96	80.275	ENSACLG00000025356	smarca5	95	82.258	Astatotilapia_calliptera
ENSCGRG00001010776	Smarca1	88	87.527	ENSAMXG00000011227	smarca1	99	89.091	Astyanax_mexicanus
ENSCGRG00001010776	Smarca1	97	80.272	ENSAMXG00000005709	smarca5	94	83.077	Astyanax_mexicanus
ENSCGRG00001010776	Smarca1	99	93.957	ENSBTAG00000002292	SMARCA1	100	94.196	Bos_taurus
ENSCGRG00001010776	Smarca1	93	63.068	WBGene00002169	isw-1	97	63.068	Caenorhabditis_elegans
ENSCGRG00001010776	Smarca1	98	96.150	ENSCJAG00000002868	SMARCA1	100	95.751	Callithrix_jacchus
ENSCGRG00001010776	Smarca1	100	85.316	ENSCAFG00000018673	SMARCA1	99	86.941	Canis_familiaris
ENSCGRG00001010776	Smarca1	100	94.995	ENSCAFG00020001751	SMARCA1	100	94.618	Canis_lupus_dingo
ENSCGRG00001010776	Smarca1	100	94.062	ENSCHIG00000009837	SMARCA1	100	94.345	Capra_hircus
ENSCGRG00001010776	Smarca1	94	96.500	ENSTSYG00000004240	SMARCA1	98	95.918	Carlito_syrichta
ENSCGRG00001010776	Smarca1	96	95.271	ENSCPOG00000013601	SMARCA1	100	93.365	Cavia_porcellus
ENSCGRG00001010776	Smarca1	98	93.070	ENSCCAG00000030817	SMARCA1	100	92.729	Cebus_capucinus
ENSCGRG00001010776	Smarca1	98	95.243	ENSCATG00000015921	SMARCA1	100	94.865	Cercocebus_atys
ENSCGRG00001010776	Smarca1	98	94.321	ENSCLAG00000002171	SMARCA1	100	93.673	Chinchilla_lanigera
ENSCGRG00001010776	Smarca1	98	96.343	ENSCSAG00000008460	SMARCA1	100	95.940	Chlorocebus_sabaeus
ENSCGRG00001010776	Smarca1	97	89.300	ENSCPBG00000001146	SMARCA1	94	91.767	Chrysemys_picta_bellii
ENSCGRG00001010776	Smarca1	92	72.250	ENSCING00000004110	swi/snf	98	72.250	Ciona_intestinalis
ENSCGRG00001010776	Smarca1	93	71.558	ENSCSAVG00000004620	-	100	73.274	Ciona_savignyi
ENSCGRG00001010776	Smarca1	98	96.246	ENSCANG00000007183	SMARCA1	100	95.845	Colobus_angolensis_palliatus
ENSCGRG00001010776	Smarca1	95	99.301	ENSCGRG00000015301	Smarca1	99	99.301	Cricetulus_griseus_crigri
ENSCGRG00001010776	Smarca1	92	82.684	ENSCSEG00000000328	smarca5	95	82.121	Cynoglossus_semilaevis
ENSCGRG00001010776	Smarca1	93	82.281	ENSCVAG00000008668	smarca5	99	82.921	Cyprinodon_variegatus
ENSCGRG00001010776	Smarca1	95	80.476	ENSDARG00000052348	smarca5	95	81.901	Danio_rerio
ENSCGRG00001010776	Smarca1	93	84.501	ENSDARG00000012776	smarca1	98	84.501	Danio_rerio
ENSCGRG00001010776	Smarca1	98	93.003	ENSDNOG00000004315	SMARCA1	99	93.147	Dasypus_novemcinctus
ENSCGRG00001010776	Smarca1	100	94.408	ENSDORG00000009270	Smarca1	99	94.691	Dipodomys_ordii
ENSCGRG00001010776	Smarca1	93	71.385	FBgn0011604	Iswi	98	71.598	Drosophila_melanogaster
ENSCGRG00001010776	Smarca1	79	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSCGRG00001010776	Smarca1	94	79.053	ENSEBUG00000001239	smarca5	98	79.053	Eptatretus_burgeri
ENSCGRG00001010776	Smarca1	94	90.873	ENSEASG00005008218	SMARCA1	100	92.020	Equus_asinus_asinus
ENSCGRG00001010776	Smarca1	100	94.439	ENSECAG00000012106	SMARCA1	100	94.722	Equus_caballus
ENSCGRG00001010776	Smarca1	77	96.026	ENSEEUG00000014927	SMARCA1	84	96.026	Erinaceus_europaeus
ENSCGRG00001010776	Smarca1	96	84.843	ENSELUG00000010515	smarca1	98	86.306	Esox_lucius
ENSCGRG00001010776	Smarca1	98	96.150	ENSFCAG00000018496	SMARCA1	100	94.712	Felis_catus
ENSCGRG00001010776	Smarca1	88	90.595	ENSFALG00000000209	SMARCA1	98	91.886	Ficedula_albicollis
ENSCGRG00001010776	Smarca1	95	95.892	ENSFDAG00000009818	SMARCA1	98	95.980	Fukomys_damarensis
ENSCGRG00001010776	Smarca1	93	82.688	ENSFHEG00000007687	smarca5	94	82.121	Fundulus_heteroclitus
ENSCGRG00001010776	Smarca1	93	89.617	ENSGALG00000008431	SMARCA1	96	91.349	Gallus_gallus
ENSCGRG00001010776	Smarca1	93	82.485	ENSGAFG00000017731	smarca5	95	81.919	Gambusia_affinis
ENSCGRG00001010776	Smarca1	92	92.284	ENSGAGG00000023575	SMARCA1	100	92.284	Gopherus_agassizii
ENSCGRG00001010776	Smarca1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCGRG00001010776	Smarca1	98	94.321	ENSHGLG00000003080	SMARCA1	100	93.579	Heterocephalus_glaber_female
ENSCGRG00001010776	Smarca1	94	94.805	ENSHGLG00100001102	SMARCA1	100	94.805	Heterocephalus_glaber_male
ENSCGRG00001010776	Smarca1	92	82.822	ENSHCOG00000005458	smarca5	95	82.121	Hippocampus_comes
ENSCGRG00001010776	Smarca1	95	84.356	ENSIPUG00000016905	Smarca1	99	86.210	Ictalurus_punctatus
ENSCGRG00001010776	Smarca1	96	80.830	ENSIPUG00000005229	SMARCA5	98	81.463	Ictalurus_punctatus
ENSCGRG00001010776	Smarca1	98	95.765	ENSSTOG00000014524	SMARCA1	100	94.334	Ictidomys_tridecemlineatus
ENSCGRG00001010776	Smarca1	98	94.923	ENSJJAG00000002593	Smarca1	100	93.797	Jaculus_jaculus
ENSCGRG00001010776	Smarca1	92	82.720	ENSKMAG00000003777	smarca5	95	82.020	Kryptolebias_marmoratus
ENSCGRG00001010776	Smarca1	88	83.029	ENSLBEG00000013295	SMARCA1	100	84.071	Labrus_bergylta
ENSCGRG00001010776	Smarca1	93	81.818	ENSLBEG00000018112	smarca5	95	81.818	Labrus_bergylta
ENSCGRG00001010776	Smarca1	96	87.968	ENSLACG00000016697	SMARCA1	98	89.157	Latimeria_chalumnae
ENSCGRG00001010776	Smarca1	94	87.413	ENSLOCG00000014591	smarca1	97	87.663	Lepisosteus_oculatus
ENSCGRG00001010776	Smarca1	94	94.732	ENSLAFG00000000896	SMARCA1	99	94.726	Loxodonta_africana
ENSCGRG00001010776	Smarca1	98	96.343	ENSMFAG00000002117	SMARCA1	100	94.865	Macaca_fascicularis
ENSCGRG00001010776	Smarca1	98	95.243	ENSMMUG00000008818	SMARCA1	99	96.649	Macaca_mulatta
ENSCGRG00001010776	Smarca1	98	95.243	ENSMNEG00000041768	SMARCA1	100	94.865	Macaca_nemestrina
ENSCGRG00001010776	Smarca1	98	96.246	ENSMLEG00000043198	SMARCA1	100	95.845	Mandrillus_leucophaeus
ENSCGRG00001010776	Smarca1	93	82.485	ENSMAMG00000014294	smarca5	95	81.919	Mastacembelus_armatus
ENSCGRG00001010776	Smarca1	96	80.275	ENSMZEG00005009369	smarca5	95	82.258	Maylandia_zebra
ENSCGRG00001010776	Smarca1	95	89.261	ENSMGAG00000007042	SMARCA1	99	89.683	Meleagris_gallopavo
ENSCGRG00001010776	Smarca1	100	97.820	ENSMAUG00000008133	Smarca1	100	97.820	Mesocricetus_auratus
ENSCGRG00001010776	Smarca1	98	95.573	ENSMICG00000015768	SMARCA1	100	94.145	Microcebus_murinus
ENSCGRG00001010776	Smarca1	100	97.346	ENSMOCG00000009464	Smarca1	100	97.346	Microtus_ochrogaster
ENSCGRG00001010776	Smarca1	93	80.222	ENSMMOG00000005547	smarca5	99	80.222	Mola_mola
ENSCGRG00001010776	Smarca1	98	88.008	ENSMODG00000013187	-	99	88.008	Monodelphis_domestica
ENSCGRG00001010776	Smarca1	92	82.311	ENSMALG00000002081	smarca5	97	81.893	Monopterus_albus
ENSCGRG00001010776	Smarca1	100	96.429	MGP_CAROLIEiJ_G0033034	Smarca1	100	96.429	Mus_caroli
ENSCGRG00001010776	Smarca1	100	96.523	ENSMUSG00000031099	Smarca1	100	96.523	Mus_musculus
ENSCGRG00001010776	Smarca1	100	96.523	MGP_PahariEiJ_G0031579	Smarca1	100	96.523	Mus_pahari
ENSCGRG00001010776	Smarca1	100	96.617	MGP_SPRETEiJ_G0034192	Smarca1	100	96.617	Mus_spretus
ENSCGRG00001010776	Smarca1	100	93.744	ENSMPUG00000017423	SMARCA1	95	93.371	Mustela_putorius_furo
ENSCGRG00001010776	Smarca1	98	92.505	ENSMLUG00000029614	SMARCA1	100	91.892	Myotis_lucifugus
ENSCGRG00001010776	Smarca1	100	96.493	ENSNGAG00000006492	Smarca1	100	96.493	Nannospalax_galili
ENSCGRG00001010776	Smarca1	93	82.790	ENSNBRG00000004463	smarca5	99	82.359	Neolamprologus_brichardi
ENSCGRG00001010776	Smarca1	98	94.481	ENSNLEG00000015179	SMARCA1	100	94.118	Nomascus_leucogenys
ENSCGRG00001010776	Smarca1	90	80.672	ENSMEUG00000008819	SMARCA1	99	80.907	Notamacropus_eugenii
ENSCGRG00001010776	Smarca1	98	94.686	ENSODEG00000012163	SMARCA1	100	93.460	Octodon_degus
ENSCGRG00001010776	Smarca1	96	80.373	ENSONIG00000009993	smarca5	95	82.359	Oreochromis_niloticus
ENSCGRG00001010776	Smarca1	92	92.284	ENSOANG00000002862	SMARCA1	100	92.284	Ornithorhynchus_anatinus
ENSCGRG00001010776	Smarca1	98	94.524	ENSOCUG00000001047	SMARCA1	100	93.201	Oryctolagus_cuniculus
ENSCGRG00001010776	Smarca1	92	82.720	ENSORLG00000021998	smarca5	95	82.020	Oryzias_latipes
ENSCGRG00001010776	Smarca1	92	82.822	ENSORLG00020017679	smarca5	95	82.121	Oryzias_latipes_hni
ENSCGRG00001010776	Smarca1	92	82.720	ENSORLG00015017210	smarca5	95	81.919	Oryzias_latipes_hsok
ENSCGRG00001010776	Smarca1	92	82.618	ENSOMEG00000000086	smarca5	95	81.818	Oryzias_melastigma
ENSCGRG00001010776	Smarca1	98	94.879	ENSOGAG00000004399	SMARCA1	100	94.028	Otolemur_garnettii
ENSCGRG00001010776	Smarca1	93	96.837	ENSOARG00000014638	SMARCA1	100	96.837	Ovis_aries
ENSCGRG00001010776	Smarca1	98	96.343	ENSPPAG00000034647	SMARCA1	100	95.940	Pan_paniscus
ENSCGRG00001010776	Smarca1	98	96.150	ENSPPRG00000008929	SMARCA1	100	94.712	Panthera_pardus
ENSCGRG00001010776	Smarca1	94	94.467	ENSPTIG00000000915	SMARCA1	98	94.390	Panthera_tigris_altaica
ENSCGRG00001010776	Smarca1	98	96.343	ENSPTRG00000049876	SMARCA1	100	94.865	Pan_troglodytes
ENSCGRG00001010776	Smarca1	98	96.343	ENSPANG00000003871	SMARCA1	100	95.940	Papio_anubis
ENSCGRG00001010776	Smarca1	93	84.913	ENSPKIG00000013411	smarca1	98	86.203	Paramormyrops_kingsleyae
ENSCGRG00001010776	Smarca1	95	90.030	ENSPSIG00000010101	SMARCA1	100	91.872	Pelodiscus_sinensis
ENSCGRG00001010776	Smarca1	100	98.009	ENSPEMG00000017503	Smarca1	100	98.009	Peromyscus_maniculatus_bairdii
ENSCGRG00001010776	Smarca1	95	90.809	ENSPCIG00000015460	SMARCA1	98	91.165	Phascolarctos_cinereus
ENSCGRG00001010776	Smarca1	92	82.515	ENSPFOG00000007649	smarca5	95	81.717	Poecilia_formosa
ENSCGRG00001010776	Smarca1	92	82.515	ENSPLAG00000003363	smarca5	95	81.717	Poecilia_latipinna
ENSCGRG00001010776	Smarca1	92	82.618	ENSPMEG00000019849	smarca5	95	81.818	Poecilia_mexicana
ENSCGRG00001010776	Smarca1	92	82.618	ENSPREG00000023250	smarca5	95	81.818	Poecilia_reticulata
ENSCGRG00001010776	Smarca1	98	93.551	ENSPPYG00000020703	SMARCA1	100	93.201	Pongo_abelii
ENSCGRG00001010776	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	90.749	Propithecus_coquereli
ENSCGRG00001010776	Smarca1	92	95.281	ENSPVAG00000003805	SMARCA1	94	95.281	Pteropus_vampyrus
ENSCGRG00001010776	Smarca1	56	83.288	ENSPNYG00000012299	smarca5	92	82.133	Pundamilia_nyererei
ENSCGRG00001010776	Smarca1	100	97.167	ENSRNOG00000003762	Smarca1	100	97.167	Rattus_norvegicus
ENSCGRG00001010776	Smarca1	98	96.246	ENSRROG00000034167	SMARCA1	100	95.845	Rhinopithecus_roxellana
ENSCGRG00001010776	Smarca1	93	97.245	ENSSBOG00000020641	SMARCA1	100	97.245	Saimiri_boliviensis_boliviensis
ENSCGRG00001010776	Smarca1	92	86.125	ENSSHAG00000013518	SMARCA1	99	86.125	Sarcophilus_harrisii
ENSCGRG00001010776	Smarca1	96	85.714	ENSSFOG00015009043	smarca1	98	86.687	Scleropages_formosus
ENSCGRG00001010776	Smarca1	96	80.413	ENSSFOG00015016794	smarca5	100	82.680	Scleropages_formosus
ENSCGRG00001010776	Smarca1	93	81.947	ENSSMAG00000004801	smarca5	95	81.947	Scophthalmus_maximus
ENSCGRG00001010776	Smarca1	97	79.610	ENSSDUG00000020690	smarca5	97	80.981	Seriola_dumerili
ENSCGRG00001010776	Smarca1	97	79.610	ENSSLDG00000025190	smarca5	97	80.981	Seriola_lalandi_dorsalis
ENSCGRG00001010776	Smarca1	87	89.674	ENSSARG00000000842	SMARCA1	92	89.674	Sorex_araneus
ENSCGRG00001010776	Smarca1	95	88.967	ENSSPUG00000000590	SMARCA1	94	90.741	Sphenodon_punctatus
ENSCGRG00001010776	Smarca1	93	82.281	ENSSPAG00000002894	smarca5	97	83.260	Stegastes_partitus
ENSCGRG00001010776	Smarca1	98	93.307	ENSSSCG00000012649	SMARCA1	99	94.509	Sus_scrofa
ENSCGRG00001010776	Smarca1	93	91.141	ENSTGUG00000003899	-	100	91.141	Taeniopygia_guttata
ENSCGRG00001010776	Smarca1	93	82.485	ENSTRUG00000014094	smarca5	95	81.919	Takifugu_rubripes
ENSCGRG00001010776	Smarca1	92	81.967	ENSTNIG00000017717	smarca5	94	81.111	Tetraodon_nigroviridis
ENSCGRG00001010776	Smarca1	94	89.659	ENSTBEG00000014973	SMARCA1	99	89.648	Tupaia_belangeri
ENSCGRG00001010776	Smarca1	94	93.434	ENSTTRG00000006168	SMARCA1	100	93.434	Tursiops_truncatus
ENSCGRG00001010776	Smarca1	100	94.618	ENSUAMG00000020201	SMARCA1	100	94.240	Ursus_americanus
ENSCGRG00001010776	Smarca1	95	90.020	ENSUMAG00000004073	SMARCA1	99	95.943	Ursus_maritimus
ENSCGRG00001010776	Smarca1	73	97.771	ENSVPAG00000010492	-	80	97.771	Vicugna_pacos
ENSCGRG00001010776	Smarca1	94	96.500	ENSVVUG00000008878	SMARCA1	99	96.865	Vulpes_vulpes
ENSCGRG00001010776	Smarca1	94	87.952	ENSXETG00000001526	smarca1	99	87.952	Xenopus_tropicalis
ENSCGRG00001010776	Smarca1	93	82.383	ENSXCOG00000011170	smarca5	98	81.818	Xiphophorus_couchianus
ENSCGRG00001010776	Smarca1	93	82.383	ENSXMAG00000009678	smarca5	97	83.882	Xiphophorus_maculatus