EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001011243 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: AA960436
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 14296 bases
Position: chrscaffold_20:10633923-10648218
Accession: 100762459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001009083	HVSL	PF09749.9	1.2e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001013257	-	1688	XM_003509794	ENSCGRP00001009083	268 (aa)	XP_003509842	G3I3J6

Gene Model

Click here to download ENSCGRG00001011243's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001011243's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001011243	USB1	100	83.582	ENSG00000103005	USB1	100	88.318	Homo_sapiens
ENSCGRG00001011243	USB1	98	48.387	ENSAPOG00000011942	usb1	99	48.387	Acanthochromis_polyacanthus
ENSCGRG00001011243	USB1	100	82.528	ENSAMEG00000017205	USB1	100	82.528	Ailuropoda_melanoleuca
ENSCGRG00001011243	USB1	84	54.911	ENSACIG00000012234	usb1	99	52.222	Amphilophus_citrinellus
ENSCGRG00001011243	USB1	85	53.304	ENSAOCG00000014831	usb1	99	48.754	Amphiprion_ocellaris
ENSCGRG00001011243	USB1	85	53.744	ENSAPEG00000000296	usb1	99	49.110	Amphiprion_percula
ENSCGRG00001011243	USB1	98	49.286	ENSATEG00000009348	usb1	99	49.286	Anabas_testudineus
ENSCGRG00001011243	USB1	84	69.604	ENSAPLG00000002756	USB1	100	70.044	Anas_platyrhynchos
ENSCGRG00001011243	USB1	85	62.882	ENSACAG00000015481	USB1	100	62.882	Anolis_carolinensis
ENSCGRG00001011243	USB1	100	84.701	ENSANAG00000035640	USB1	100	85.075	Aotus_nancymaae
ENSCGRG00001011243	USB1	84	54.018	ENSACLG00000020586	usb1	99	49.286	Astatotilapia_calliptera
ENSCGRG00001011243	USB1	83	51.121	ENSAMXG00000040146	usb1	95	45.139	Astyanax_mexicanus
ENSCGRG00001011243	USB1	100	82.090	ENSBTAG00000015758	USB1	100	82.090	Bos_taurus
ENSCGRG00001011243	USB1	100	84.328	ENSCJAG00000011733	USB1	100	84.701	Callithrix_jacchus
ENSCGRG00001011243	USB1	99	81.618	ENSCAFG00000008556	USB1	73	81.985	Canis_familiaris
ENSCGRG00001011243	USB1	99	82.528	ENSCAFG00020009263	USB1	99	82.528	Canis_lupus_dingo
ENSCGRG00001011243	USB1	100	80.597	ENSCHIG00000024290	USB1	100	80.597	Capra_hircus
ENSCGRG00001011243	USB1	100	83.582	ENSTSYG00000006997	USB1	100	83.582	Carlito_syrichta
ENSCGRG00001011243	USB1	87	69.828	ENSCAPG00000009057	USB1	100	69.828	Cavia_aperea
ENSCGRG00001011243	USB1	100	81.716	ENSCPOG00000014325	USB1	100	81.716	Cavia_porcellus
ENSCGRG00001011243	USB1	100	84.701	ENSCCAG00000022132	USB1	100	85.075	Cebus_capucinus
ENSCGRG00001011243	USB1	100	84.328	ENSCATG00000032174	USB1	100	84.701	Cercocebus_atys
ENSCGRG00001011243	USB1	66	88.068	ENSCLAG00000007363	USB1	100	88.068	Chinchilla_lanigera
ENSCGRG00001011243	USB1	100	84.701	ENSCSAG00000004783	USB1	100	85.075	Chlorocebus_sabaeus
ENSCGRG00001011243	USB1	100	61.871	ENSCPBG00000026943	USB1	100	62.590	Chrysemys_picta_bellii
ENSCGRG00001011243	USB1	82	33.186	ENSCSAVG00000000894	-	90	30.916	Ciona_savignyi
ENSCGRG00001011243	USB1	100	83.582	ENSCANG00000037135	USB1	100	83.955	Colobus_angolensis_palliatus
ENSCGRG00001011243	USB1	100	100.000	ENSCGRG00000013252	USB1	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001011243	USB1	98	47.445	ENSCSEG00000013881	usb1	99	47.445	Cynoglossus_semilaevis
ENSCGRG00001011243	USB1	84	50.000	ENSCVAG00000009252	usb1	97	50.435	Cyprinodon_variegatus
ENSCGRG00001011243	USB1	89	48.739	ENSDARG00000003841	usb1	99	45.091	Danio_rerio
ENSCGRG00001011243	USB1	100	83.582	ENSDORG00000001888	Usb1	100	84.701	Dipodomys_ordii
ENSCGRG00001011243	USB1	87	35.366	FBgn0037713	CG16790	97	34.672	Drosophila_melanogaster
ENSCGRG00001011243	USB1	100	69.030	ENSETEG00000019682	USB1	100	69.030	Echinops_telfairi
ENSCGRG00001011243	USB1	83	49.099	ENSEBUG00000005889	usb1	78	49.099	Eptatretus_burgeri
ENSCGRG00001011243	USB1	100	82.090	ENSEASG00005005484	USB1	100	82.090	Equus_asinus_asinus
ENSCGRG00001011243	USB1	100	82.836	ENSECAG00000019493	USB1	91	82.836	Equus_caballus
ENSCGRG00001011243	USB1	66	78.409	ENSEEUG00000000154	USB1	100	60.448	Erinaceus_europaeus
ENSCGRG00001011243	USB1	91	48.361	ENSELUG00000010974	usb1	99	46.520	Esox_lucius
ENSCGRG00001011243	USB1	100	83.209	ENSFCAG00000002693	USB1	100	83.209	Felis_catus
ENSCGRG00001011243	USB1	84	65.625	ENSFALG00000006876	USB1	99	60.219	Ficedula_albicollis
ENSCGRG00001011243	USB1	100	82.836	ENSFDAG00000010052	USB1	100	82.836	Fukomys_damarensis
ENSCGRG00001011243	USB1	85	48.347	ENSFHEG00000012334	usb1	96	48.347	Fundulus_heteroclitus
ENSCGRG00001011243	USB1	83	51.570	ENSGMOG00000004228	usb1	99	51.570	Gadus_morhua
ENSCGRG00001011243	USB1	83	66.071	ENSGALG00000035604	USB1	100	62.825	Gallus_gallus
ENSCGRG00001011243	USB1	98	50.545	ENSGAFG00000021890	usb1	99	50.545	Gambusia_affinis
ENSCGRG00001011243	USB1	84	52.232	ENSGACG00000003257	usb1	99	48.551	Gasterosteus_aculeatus
ENSCGRG00001011243	USB1	100	64.103	ENSGAGG00000022572	USB1	100	64.103	Gopherus_agassizii
ENSCGRG00001011243	USB1	100	83.955	ENSGGOG00000017147	USB1	100	84.328	Gorilla_gorilla
ENSCGRG00001011243	USB1	91	51.852	ENSHBUG00000009823	usb1	99	49.821	Haplochromis_burtoni
ENSCGRG00001011243	USB1	100	83.955	ENSHGLG00000016078	USB1	98	83.955	Heterocephalus_glaber_female
ENSCGRG00001011243	USB1	100	83.955	ENSHGLG00100005562	USB1	98	83.955	Heterocephalus_glaber_male
ENSCGRG00001011243	USB1	81	56.019	ENSHCOG00000015633	usb1	99	51.908	Hippocampus_comes
ENSCGRG00001011243	USB1	98	46.528	ENSIPUG00000008601	usb1	99	46.528	Ictalurus_punctatus
ENSCGRG00001011243	USB1	100	82.784	ENSSTOG00000007548	USB1	100	82.784	Ictidomys_tridecemlineatus
ENSCGRG00001011243	USB1	100	87.313	ENSJJAG00000021859	Usb1	100	87.313	Jaculus_jaculus
ENSCGRG00001011243	USB1	92	49.012	ENSKMAG00000007200	usb1	99	47.500	Kryptolebias_marmoratus
ENSCGRG00001011243	USB1	74	51.515	ENSLBEG00000008452	usb1	82	46.311	Labrus_bergylta
ENSCGRG00001011243	USB1	76	60.577	ENSLACG00000000105	USB1	91	53.788	Latimeria_chalumnae
ENSCGRG00001011243	USB1	88	54.545	ENSLOCG00000000465	usb1	99	51.418	Lepisosteus_oculatus
ENSCGRG00001011243	USB1	100	66.544	ENSLAFG00000002267	USB1	100	66.912	Loxodonta_africana
ENSCGRG00001011243	USB1	100	84.701	ENSMFAG00000003926	USB1	100	85.075	Macaca_fascicularis
ENSCGRG00001011243	USB1	100	84.701	ENSMMUG00000022669	USB1	100	85.075	Macaca_mulatta
ENSCGRG00001011243	USB1	100	84.328	ENSMNEG00000042487	USB1	100	84.701	Macaca_nemestrina
ENSCGRG00001011243	USB1	100	84.701	ENSMLEG00000028756	USB1	100	85.075	Mandrillus_leucophaeus
ENSCGRG00001011243	USB1	98	49.640	ENSMAMG00000015092	usb1	99	49.640	Mastacembelus_armatus
ENSCGRG00001011243	USB1	84	54.018	ENSMZEG00005010008	usb1	99	49.462	Maylandia_zebra
ENSCGRG00001011243	USB1	100	93.284	ENSMAUG00000007832	Usb1	100	93.284	Mesocricetus_auratus
ENSCGRG00001011243	USB1	100	82.090	ENSMICG00000004900	USB1	100	84.328	Microcebus_murinus
ENSCGRG00001011243	USB1	100	91.791	ENSMOCG00000022647	Usb1	100	91.791	Microtus_ochrogaster
ENSCGRG00001011243	USB1	85	51.528	ENSMMOG00000000490	usb1	99	50.190	Mola_mola
ENSCGRG00001011243	USB1	100	66.790	ENSMODG00000014067	USB1	100	68.635	Monodelphis_domestica
ENSCGRG00001011243	USB1	85	52.863	ENSMALG00000005930	usb1	99	48.043	Monopterus_albus
ENSCGRG00001011243	USB1	100	87.313	MGP_CAROLIEiJ_G0031421	Usb1	100	87.611	Mus_caroli
ENSCGRG00001011243	USB1	100	88.060	ENSMUSG00000031792	Usb1	100	89.381	Mus_musculus
ENSCGRG00001011243	USB1	100	88.060	MGP_PahariEiJ_G0023019	Usb1	100	89.744	Mus_pahari
ENSCGRG00001011243	USB1	100	88.060	MGP_SPRETEiJ_G0032540	Usb1	100	88.060	Mus_spretus
ENSCGRG00001011243	USB1	100	81.041	ENSMPUG00000004684	USB1	96	81.041	Mustela_putorius_furo
ENSCGRG00001011243	USB1	86	85.281	ENSMLUG00000007400	USB1	100	85.281	Myotis_lucifugus
ENSCGRG00001011243	USB1	100	88.848	ENSNGAG00000009703	Usb1	100	88.848	Nannospalax_galili
ENSCGRG00001011243	USB1	91	47.325	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSCGRG00001011243	USB1	94	83.399	ENSNLEG00000003340	USB1	100	83.794	Nomascus_leucogenys
ENSCGRG00001011243	USB1	57	58.333	ENSMEUG00000003328	-	100	62.179	Notamacropus_eugenii
ENSCGRG00001011243	USB1	63	97.059	ENSOPRG00000011803	USB1	72	97.059	Ochotona_princeps
ENSCGRG00001011243	USB1	100	82.836	ENSODEG00000016214	USB1	100	82.836	Octodon_degus
ENSCGRG00001011243	USB1	98	50.538	ENSONIG00000011063	usb1	99	50.538	Oreochromis_niloticus
ENSCGRG00001011243	USB1	84	72.889	ENSOANG00000012118	USB1	94	72.889	Ornithorhynchus_anatinus
ENSCGRG00001011243	USB1	84	51.339	ENSORLG00000012479	usb1	99	46.691	Oryzias_latipes
ENSCGRG00001011243	USB1	84	51.339	ENSORLG00020018671	usb1	99	46.863	Oryzias_latipes_hni
ENSCGRG00001011243	USB1	84	51.339	ENSORLG00015009679	usb1	99	46.667	Oryzias_latipes_hsok
ENSCGRG00001011243	USB1	84	51.339	ENSOMEG00000012930	usb1	99	46.545	Oryzias_melastigma
ENSCGRG00001011243	USB1	100	77.239	ENSOGAG00000003273	USB1	100	77.612	Otolemur_garnettii
ENSCGRG00001011243	USB1	93	80.321	ENSOARG00000001107	USB1	95	80.321	Ovis_aries
ENSCGRG00001011243	USB1	100	84.328	ENSPPAG00000042137	USB1	100	84.701	Pan_paniscus
ENSCGRG00001011243	USB1	100	83.582	ENSPPRG00000024797	USB1	100	83.582	Panthera_pardus
ENSCGRG00001011243	USB1	100	82.836	ENSPTIG00000007506	USB1	100	82.836	Panthera_tigris_altaica
ENSCGRG00001011243	USB1	100	76.493	ENSPTRG00000008172	USB1	100	88.785	Pan_troglodytes
ENSCGRG00001011243	USB1	100	84.701	ENSPANG00000025138	USB1	100	85.075	Papio_anubis
ENSCGRG00001011243	USB1	97	49.237	ENSPKIG00000015109	usb1	99	46.441	Paramormyrops_kingsleyae
ENSCGRG00001011243	USB1	84	49.580	ENSPSIG00000004305	USB1	100	49.580	Pelodiscus_sinensis
ENSCGRG00001011243	USB1	83	52.018	ENSPMGG00000017725	usb1	97	48.473	Periophthalmus_magnuspinnatus
ENSCGRG00001011243	USB1	100	91.912	ENSPEMG00000016183	Usb1	100	92.279	Peromyscus_maniculatus_bairdii
ENSCGRG00001011243	USB1	84	50.885	ENSPMAG00000000462	usb1	95	50.885	Petromyzon_marinus
ENSCGRG00001011243	USB1	98	50.000	ENSPFOG00000011130	usb1	99	50.000	Poecilia_formosa
ENSCGRG00001011243	USB1	98	49.638	ENSPLAG00000009820	usb1	99	49.638	Poecilia_latipinna
ENSCGRG00001011243	USB1	98	50.362	ENSPMEG00000006402	usb1	99	50.362	Poecilia_mexicana
ENSCGRG00001011243	USB1	85	51.240	ENSPREG00000001047	usb1	98	51.240	Poecilia_reticulata
ENSCGRG00001011243	USB1	95	80.392	ENSPPYG00000007401	USB1	100	80.784	Pongo_abelii
ENSCGRG00001011243	USB1	100	83.955	ENSPCOG00000022612	USB1	100	84.328	Propithecus_coquereli
ENSCGRG00001011243	USB1	100	79.478	ENSPVAG00000004613	USB1	100	79.478	Pteropus_vampyrus
ENSCGRG00001011243	USB1	91	51.852	ENSPNYG00000022262	usb1	99	49.821	Pundamilia_nyererei
ENSCGRG00001011243	USB1	84	51.339	ENSPNAG00000011736	usb1	99	45.051	Pygocentrus_nattereri
ENSCGRG00001011243	USB1	100	89.925	ENSRNOG00000013216	Usb1	100	89.925	Rattus_norvegicus
ENSCGRG00001011243	USB1	100	77.985	ENSRBIG00000044466	USB1	100	90.187	Rhinopithecus_bieti
ENSCGRG00001011243	USB1	100	84.701	ENSRROG00000029211	USB1	100	85.075	Rhinopithecus_roxellana
ENSCGRG00001011243	USB1	100	83.955	ENSSBOG00000029362	USB1	100	84.328	Saimiri_boliviensis_boliviensis
ENSCGRG00001011243	USB1	82	72.603	ENSSHAG00000006993	USB1	100	67.315	Sarcophilus_harrisii
ENSCGRG00001011243	USB1	86	55.844	ENSSFOG00015023663	usb1	91	49.827	Scleropages_formosus
ENSCGRG00001011243	USB1	91	48.375	ENSSMAG00000015834	usb1	99	49.153	Scophthalmus_maximus
ENSCGRG00001011243	USB1	84	55.357	ENSSDUG00000002949	usb1	99	50.549	Seriola_dumerili
ENSCGRG00001011243	USB1	99	49.064	ENSSLDG00000014174	usb1	99	50.709	Seriola_lalandi_dorsalis
ENSCGRG00001011243	USB1	80	69.626	ENSSPUG00000006741	USB1	100	69.626	Sphenodon_punctatus
ENSCGRG00001011243	USB1	98	46.996	ENSSPAG00000007484	usb1	99	48.763	Stegastes_partitus
ENSCGRG00001011243	USB1	100	82.900	ENSSSCG00000002807	USB1	100	82.900	Sus_scrofa
ENSCGRG00001011243	USB1	78	69.856	ENSTGUG00000004792	USB1	99	62.313	Taeniopygia_guttata
ENSCGRG00001011243	USB1	98	46.715	ENSTRUG00000021069	usb1	99	46.715	Takifugu_rubripes
ENSCGRG00001011243	USB1	98	46.388	ENSTNIG00000000626	usb1	98	46.388	Tetraodon_nigroviridis
ENSCGRG00001011243	USB1	87	60.345	ENSTBEG00000001507	USB1	100	60.345	Tupaia_belangeri
ENSCGRG00001011243	USB1	100	82.900	ENSUAMG00000016823	USB1	100	82.900	Ursus_americanus
ENSCGRG00001011243	USB1	80	86.449	ENSUMAG00000021369	USB1	100	86.449	Ursus_maritimus
ENSCGRG00001011243	USB1	77	58.738	ENSVPAG00000009834	-	100	58.738	Vicugna_pacos
ENSCGRG00001011243	USB1	99	82.900	ENSVVUG00000023700	USB1	95	82.449	Vulpes_vulpes
ENSCGRG00001011243	USB1	81	58.257	ENSXETG00000013795	usb1	99	53.612	Xenopus_tropicalis
ENSCGRG00001011243	USB1	85	54.386	ENSXMAG00000024687	usb1	80	51.429	Xiphophorus_maculatus