EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001011306 (Gene tree)
Gene ID: -
Gene Symbol: Chd3
Alias: 2600010P09Rik|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 20883 bases
Position: chrscaffold_4:82485412-82506294
Accession: 1344395
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001009214	ResIII	PF04851.15	1.9e-08	1	1
ENSCGRP00001009204	ResIII	PF04851.15	1.9e-08	1	1
ENSCGRP00001009198	ResIII	PF04851.15	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001013384	-	5886	-	ENSCGRP00001009198	1961 (aa)	-	-
ENSCGRT00001013391	-	5904	-	ENSCGRP00001009204	1967 (aa)	-	-
ENSCGRT00001013401	-	5802	-	ENSCGRP00001009214	1933 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001011306's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001011306's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001011306	Chd3	90	70.340	ENSCGRG00001020662	Chd4	95	69.979
ENSCGRG00001011306	Chd3	57	72.302	ENSCGRG00001011042	Chd5	99	72.752

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001011306	Chd3	100	97.673	ENSG00000170004	CHD3	98	97.673	Homo_sapiens
ENSCGRG00001011306	Chd3	80	82.540	ENSAPOG00000005614	chd3	94	82.540	Acanthochromis_polyacanthus
ENSCGRG00001011306	Chd3	69	96.408	ENSAMEG00000003025	-	100	96.408	Ailuropoda_melanoleuca
ENSCGRG00001011306	Chd3	86	75.930	ENSACIG00000019671	chd3	99	80.303	Amphilophus_citrinellus
ENSCGRG00001011306	Chd3	92	80.546	ENSAOCG00000023784	chd3	97	81.771	Amphiprion_ocellaris
ENSCGRG00001011306	Chd3	92	79.863	ENSAPEG00000006341	chd3	96	75.471	Amphiprion_percula
ENSCGRG00001011306	Chd3	92	81.315	ENSATEG00000000848	chd3	99	73.496	Anabas_testudineus
ENSCGRG00001011306	Chd3	99	84.831	ENSACAG00000004276	CHD3	95	84.495	Anolis_carolinensis
ENSCGRG00001011306	Chd3	100	94.312	ENSANAG00000034323	CHD3	99	97.231	Aotus_nancymaae
ENSCGRG00001011306	Chd3	98	74.136	ENSACLG00000009222	chd3	99	74.084	Astatotilapia_calliptera
ENSCGRG00001011306	Chd3	100	96.750	ENSBTAG00000014377	CHD3	97	96.825	Bos_taurus
ENSCGRG00001011306	Chd3	100	97.673	ENSCJAG00000014766	CHD3	98	97.673	Callithrix_jacchus
ENSCGRG00001011306	Chd3	100	97.102	ENSCAFG00000016859	CHD3	98	97.102	Canis_familiaris
ENSCGRG00001011306	Chd3	95	97.016	ENSCAFG00020007422	CHD3	100	96.999	Canis_lupus_dingo
ENSCGRG00001011306	Chd3	100	97.256	ENSCHIG00000016737	CHD3	99	97.256	Capra_hircus
ENSCGRG00001011306	Chd3	100	97.673	ENSTSYG00000035658	CHD3	98	97.673	Carlito_syrichta
ENSCGRG00001011306	Chd3	100	94.665	ENSCAPG00000014864	CHD3	98	94.665	Cavia_aperea
ENSCGRG00001011306	Chd3	100	97.256	ENSCPOG00000022653	CHD3	98	97.256	Cavia_porcellus
ENSCGRG00001011306	Chd3	100	97.466	ENSCCAG00000034792	CHD3	98	97.307	Cebus_capucinus
ENSCGRG00001011306	Chd3	100	97.673	ENSCATG00000041717	CHD3	98	97.673	Cercocebus_atys
ENSCGRG00001011306	Chd3	100	97.570	ENSCLAG00000010523	CHD3	100	97.570	Chinchilla_lanigera
ENSCGRG00001011306	Chd3	100	97.256	ENSCSAG00000011122	CHD3	99	97.256	Chlorocebus_sabaeus
ENSCGRG00001011306	Chd3	91	82.791	ENSCPBG00000011966	CHD3	99	87.299	Chrysemys_picta_bellii
ENSCGRG00001011306	Chd3	100	97.570	ENSCANG00000037641	CHD3	98	97.570	Colobus_angolensis_palliatus
ENSCGRG00001011306	Chd3	94	100.000	ENSCGRG00000007878	Chd3	99	100.000	Cricetulus_griseus_crigri
ENSCGRG00001011306	Chd3	92	79.868	ENSCSEG00000004489	chd3	99	75.529	Cynoglossus_semilaevis
ENSCGRG00001011306	Chd3	94	74.154	ENSCVAG00000007293	chd3	95	82.996	Cyprinodon_variegatus
ENSCGRG00001011306	Chd3	95	76.681	ENSDARG00000021405	chd3	99	76.279	Danio_rerio
ENSCGRG00001011306	Chd3	100	82.195	ENSDNOG00000047846	CHD3	98	82.195	Dasypus_novemcinctus
ENSCGRG00001011306	Chd3	100	97.001	ENSDORG00000010713	Chd3	100	97.001	Dipodomys_ordii
ENSCGRG00001011306	Chd3	98	90.612	ENSETEG00000017733	CHD3	100	90.612	Echinops_telfairi
ENSCGRG00001011306	Chd3	54	77.575	ENSEBUG00000008310	chd3	99	70.313	Eptatretus_burgeri
ENSCGRG00001011306	Chd3	93	97.219	ENSEASG00005019360	CHD3	100	97.219	Equus_asinus_asinus
ENSCGRG00001011306	Chd3	93	97.274	ENSECAG00000010051	CHD3	100	97.274	Equus_caballus
ENSCGRG00001011306	Chd3	93	94.915	ENSEEUG00000015205	CHD3	92	96.154	Erinaceus_europaeus
ENSCGRG00001011306	Chd3	79	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSCGRG00001011306	Chd3	100	96.596	ENSFCAG00000009629	CHD3	95	96.596	Felis_catus
ENSCGRG00001011306	Chd3	100	94.665	ENSFDAG00000008220	CHD3	99	94.665	Fukomys_damarensis
ENSCGRG00001011306	Chd3	90	80.102	ENSGMOG00000013599	chd3	90	80.711	Gadus_morhua
ENSCGRG00001011306	Chd3	60	74.744	ENSGAFG00000004055	chd3	99	75.470	Gambusia_affinis
ENSCGRG00001011306	Chd3	99	70.354	ENSGACG00000019275	chd3	90	73.997	Gasterosteus_aculeatus
ENSCGRG00001011306	Chd3	76	86.490	ENSGAGG00000013164	CHD3	98	86.830	Gopherus_agassizii
ENSCGRG00001011306	Chd3	100	97.570	ENSGGOG00000013496	CHD3	98	97.570	Gorilla_gorilla
ENSCGRG00001011306	Chd3	100	97.363	ENSHGLG00000012017	CHD3	99	97.205	Heterocephalus_glaber_female
ENSCGRG00001011306	Chd3	89	89.634	ENSHGLG00100013902	CHD3	99	89.634	Heterocephalus_glaber_male
ENSCGRG00001011306	Chd3	95	71.846	ENSHCOG00000010170	chd3	96	72.389	Hippocampus_comes
ENSCGRG00001011306	Chd3	91	73.270	ENSIPUG00000003271	chd3	96	79.100	Ictalurus_punctatus
ENSCGRG00001011306	Chd3	100	97.518	ENSSTOG00000025907	CHD3	100	97.518	Ictidomys_tridecemlineatus
ENSCGRG00001011306	Chd3	100	96.743	ENSJJAG00000017633	Chd3	100	96.743	Jaculus_jaculus
ENSCGRG00001011306	Chd3	85	90.047	ENSKMAG00000019292	chd3	90	90.047	Kryptolebias_marmoratus
ENSCGRG00001011306	Chd3	97	69.826	ENSLBEG00000028485	chd3	91	87.826	Labrus_bergylta
ENSCGRG00001011306	Chd3	97	75.013	ENSLACG00000008031	CHD3	98	74.746	Latimeria_chalumnae
ENSCGRG00001011306	Chd3	98	76.494	ENSLOCG00000013965	chd3	97	77.052	Lepisosteus_oculatus
ENSCGRG00001011306	Chd3	96	93.429	ENSLAFG00000000572	CHD3	99	93.429	Loxodonta_africana
ENSCGRG00001011306	Chd3	100	97.622	ENSMFAG00000020113	CHD3	98	97.622	Macaca_fascicularis
ENSCGRG00001011306	Chd3	100	94.970	ENSMMUG00000022221	CHD3	99	93.984	Macaca_mulatta
ENSCGRG00001011306	Chd3	100	97.622	ENSMNEG00000001728	CHD3	99	96.779	Macaca_nemestrina
ENSCGRG00001011306	Chd3	100	97.673	ENSMLEG00000032249	CHD3	98	97.673	Mandrillus_leucophaeus
ENSCGRG00001011306	Chd3	86	76.516	ENSMAMG00000000564	chd3	99	76.219	Mastacembelus_armatus
ENSCGRG00001011306	Chd3	100	99.121	ENSMAUG00000013873	Chd3	99	96.608	Mesocricetus_auratus
ENSCGRG00001011306	Chd3	100	97.205	ENSMICG00000008741	CHD3	99	94.425	Microcebus_murinus
ENSCGRG00001011306	Chd3	99	99.170	ENSMOCG00000004848	Chd3	100	99.170	Microtus_ochrogaster
ENSCGRG00001011306	Chd3	96	74.520	ENSMMOG00000012699	chd3	99	73.952	Mola_mola
ENSCGRG00001011306	Chd3	93	93.892	ENSMODG00000007509	CHD3	100	93.948	Monodelphis_domestica
ENSCGRG00001011306	Chd3	100	98.295	MGP_CAROLIEiJ_G0016564	Chd3	100	98.408	Mus_caroli
ENSCGRG00001011306	Chd3	100	98.346	ENSMUSG00000018474	Chd3	99	98.462	Mus_musculus
ENSCGRG00001011306	Chd3	100	98.501	MGP_PahariEiJ_G0017695	Chd3	100	98.621	Mus_pahari
ENSCGRG00001011306	Chd3	100	98.295	MGP_SPRETEiJ_G0017400	Chd3	100	98.408	Mus_spretus
ENSCGRG00001011306	Chd3	87	97.141	ENSMPUG00000008861	CHD3	100	97.141	Mustela_putorius_furo
ENSCGRG00001011306	Chd3	100	95.888	ENSMLUG00000014643	-	98	95.736	Myotis_lucifugus
ENSCGRG00001011306	Chd3	100	98.069	ENSNGAG00000000773	Chd3	98	98.069	Nannospalax_galili
ENSCGRG00001011306	Chd3	86	76.088	ENSNBRG00000000636	chd3	98	75.561	Neolamprologus_brichardi
ENSCGRG00001011306	Chd3	98	94.562	ENSNLEG00000009770	CHD3	100	93.932	Nomascus_leucogenys
ENSCGRG00001011306	Chd3	86	91.484	ENSMEUG00000005852	CHD3	87	91.484	Notamacropus_eugenii
ENSCGRG00001011306	Chd3	95	95.784	ENSOPRG00000011069	CHD3	100	95.784	Ochotona_princeps
ENSCGRG00001011306	Chd3	100	96.951	ENSODEG00000017785	CHD3	99	96.951	Octodon_degus
ENSCGRG00001011306	Chd3	96	74.468	ENSONIG00000009292	chd3	100	74.513	Oreochromis_niloticus
ENSCGRG00001011306	Chd3	99	92.065	ENSOCUG00000029299	CHD3	100	91.561	Oryctolagus_cuniculus
ENSCGRG00001011306	Chd3	83	71.376	ENSORLG00000007107	chd3	93	71.253	Oryzias_latipes
ENSCGRG00001011306	Chd3	58	72.727	ENSORLG00020008387	chd3	95	72.639	Oryzias_latipes_hni
ENSCGRG00001011306	Chd3	72	79.800	ENSOMEG00000013691	chd3	99	77.354	Oryzias_melastigma
ENSCGRG00001011306	Chd3	100	96.697	ENSOGAG00000003216	CHD3	99	96.697	Otolemur_garnettii
ENSCGRG00001011306	Chd3	100	94.774	ENSOARG00000017855	CHD3	98	94.774	Ovis_aries
ENSCGRG00001011306	Chd3	100	95.262	ENSPPAG00000032886	CHD3	98	95.262	Pan_paniscus
ENSCGRG00001011306	Chd3	100	96.898	ENSPPRG00000000626	CHD3	98	96.898	Panthera_pardus
ENSCGRG00001011306	Chd3	100	97.725	ENSPTRG00000008714	CHD3	98	97.725	Pan_troglodytes
ENSCGRG00001011306	Chd3	100	97.409	ENSPANG00000023938	CHD3	99	96.482	Papio_anubis
ENSCGRG00001011306	Chd3	95	80.189	ENSPKIG00000006305	chd3	99	80.189	Paramormyrops_kingsleyae
ENSCGRG00001011306	Chd3	56	89.690	ENSPSIG00000010177	CHD3	98	90.219	Pelodiscus_sinensis
ENSCGRG00001011306	Chd3	100	98.678	ENSPEMG00000014262	Chd3	99	98.678	Peromyscus_maniculatus_bairdii
ENSCGRG00001011306	Chd3	100	93.165	ENSPCIG00000005442	CHD3	97	95.935	Phascolarctos_cinereus
ENSCGRG00001011306	Chd3	96	76.421	ENSPFOG00000012464	chd3	90	77.106	Poecilia_formosa
ENSCGRG00001011306	Chd3	87	83.401	ENSPLAG00000002887	chd3	98	72.057	Poecilia_latipinna
ENSCGRG00001011306	Chd3	54	81.585	ENSPMEG00000016725	chd3	94	72.208	Poecilia_mexicana
ENSCGRG00001011306	Chd3	97	75.266	ENSPREG00000011044	chd3	99	77.547	Poecilia_reticulata
ENSCGRG00001011306	Chd3	98	93.993	ENSPPYG00000007940	CHD3	98	93.993	Pongo_abelii
ENSCGRG00001011306	Chd3	96	96.767	ENSPCAG00000004350	CHD3	96	96.767	Procavia_capensis
ENSCGRG00001011306	Chd3	100	97.466	ENSPCOG00000020952	CHD3	99	97.207	Propithecus_coquereli
ENSCGRG00001011306	Chd3	87	94.977	ENSPVAG00000016344	CHD3	87	94.977	Pteropus_vampyrus
ENSCGRG00001011306	Chd3	97	77.363	ENSPNAG00000020393	chd3	98	80.224	Pygocentrus_nattereri
ENSCGRG00001011306	Chd3	93	97.820	ENSRNOG00000009722	Chd3	100	97.820	Rattus_norvegicus
ENSCGRG00001011306	Chd3	100	94.334	ENSRBIG00000033562	CHD3	99	93.753	Rhinopithecus_bieti
ENSCGRG00001011306	Chd3	100	97.673	ENSRROG00000029554	CHD3	98	97.673	Rhinopithecus_roxellana
ENSCGRG00001011306	Chd3	100	97.673	ENSSBOG00000020719	CHD3	99	96.889	Saimiri_boliviensis_boliviensis
ENSCGRG00001011306	Chd3	99	94.084	ENSSHAG00000014412	CHD3	100	94.188	Sarcophilus_harrisii
ENSCGRG00001011306	Chd3	88	80.935	ENSSFOG00015023123	chd3	98	75.595	Scleropages_formosus
ENSCGRG00001011306	Chd3	79	90.741	ENSSMAG00000006451	chd3	99	76.036	Scophthalmus_maximus
ENSCGRG00001011306	Chd3	56	72.619	ENSSDUG00000005792	chd3	95	72.344	Seriola_dumerili
ENSCGRG00001011306	Chd3	92	80.205	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
ENSCGRG00001011306	Chd3	100	97.105	ENSSSCG00000021363	CHD3	100	97.003	Sus_scrofa
ENSCGRG00001011306	Chd3	77	76.443	ENSTRUG00000014990	chd3	95	72.570	Takifugu_rubripes
ENSCGRG00001011306	Chd3	98	73.499	ENSTNIG00000012998	chd3	99	73.003	Tetraodon_nigroviridis
ENSCGRG00001011306	Chd3	65	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSCGRG00001011306	Chd3	99	97.592	ENSTTRG00000010295	CHD3	97	97.592	Tursiops_truncatus
ENSCGRG00001011306	Chd3	93	95.647	ENSUAMG00000005475	CHD3	98	97.009	Ursus_americanus
ENSCGRG00001011306	Chd3	57	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSCGRG00001011306	Chd3	96	97.192	ENSVVUG00000028011	CHD3	99	96.857	Vulpes_vulpes
ENSCGRG00001011306	Chd3	99	72.454	ENSXETG00000012991	chd3	92	73.762	Xenopus_tropicalis
ENSCGRG00001011306	Chd3	52	83.070	ENSXCOG00000000809	chd3	93	83.183	Xiphophorus_couchianus
ENSCGRG00001011306	Chd3	80	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus