EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001012973 (Gene tree)
Gene ID: -
Gene Symbol: Smndc1
Alias: 2410004J23Rik|4933440I19Rik
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 14362 bases
Position: chrscaffold_36:7921106-7935467
Accession: 100758118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001011294	SMN	PF06003.12	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001015526	-	5357	-	ENSCGRP00001011294	238 (aa)	XP_003512638	G3ICI5

Gene Model

Click here to download ENSCGRG00001012973's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001012973's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001012973	Smndc1	100	98.739	ENSG00000119953	SMNDC1	100	98.739	Homo_sapiens
ENSCGRG00001012973	Smndc1	100	74.370	ENSAPOG00000021772	smndc1	100	74.370	Acanthochromis_polyacanthus
ENSCGRG00001012973	Smndc1	100	99.160	ENSAMEG00000005251	SMNDC1	100	99.160	Ailuropoda_melanoleuca
ENSCGRG00001012973	Smndc1	100	77.824	ENSACIG00000004819	smndc1	100	77.824	Amphilophus_citrinellus
ENSCGRG00001012973	Smndc1	100	74.370	ENSAOCG00000017869	smndc1	100	74.370	Amphiprion_ocellaris
ENSCGRG00001012973	Smndc1	100	74.370	ENSAPEG00000007752	smndc1	100	74.370	Amphiprion_percula
ENSCGRG00001012973	Smndc1	100	76.471	ENSATEG00000006830	smndc1	100	76.471	Anabas_testudineus
ENSCGRG00001012973	Smndc1	83	96.465	ENSAPLG00000004322	SMNDC1	100	96.465	Anas_platyrhynchos
ENSCGRG00001012973	Smndc1	100	94.958	ENSACAG00000005983	SMNDC1	100	94.958	Anolis_carolinensis
ENSCGRG00001012973	Smndc1	100	99.160	ENSANAG00000032875	SMNDC1	100	99.160	Aotus_nancymaae
ENSCGRG00001012973	Smndc1	100	76.891	ENSACLG00000016360	smndc1	100	76.891	Astatotilapia_calliptera
ENSCGRG00001012973	Smndc1	100	75.630	ENSAMXG00000020310	smndc1	100	75.630	Astyanax_mexicanus
ENSCGRG00001012973	Smndc1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSCGRG00001012973	Smndc1	100	99.160	ENSCJAG00000018624	SMNDC1	100	99.160	Callithrix_jacchus
ENSCGRG00001012973	Smndc1	100	99.160	ENSCAFG00000010720	SMNDC1	100	99.160	Canis_familiaris
ENSCGRG00001012973	Smndc1	100	99.160	ENSCAFG00020011913	SMNDC1	100	99.160	Canis_lupus_dingo
ENSCGRG00001012973	Smndc1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSCGRG00001012973	Smndc1	100	98.739	ENSTSYG00000026454	SMNDC1	100	98.739	Carlito_syrichta
ENSCGRG00001012973	Smndc1	84	98.010	ENSCAPG00000009132	SMNDC1	100	98.010	Cavia_aperea
ENSCGRG00001012973	Smndc1	100	98.319	ENSCPOG00000031666	SMNDC1	100	98.319	Cavia_porcellus
ENSCGRG00001012973	Smndc1	100	99.160	ENSCCAG00000021793	SMNDC1	100	99.160	Cebus_capucinus
ENSCGRG00001012973	Smndc1	100	98.739	ENSCATG00000035910	SMNDC1	100	98.739	Cercocebus_atys
ENSCGRG00001012973	Smndc1	100	97.899	ENSCLAG00000002838	SMNDC1	100	97.899	Chinchilla_lanigera
ENSCGRG00001012973	Smndc1	100	99.160	ENSCSAG00000005169	SMNDC1	100	99.160	Chlorocebus_sabaeus
ENSCGRG00001012973	Smndc1	81	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSCGRG00001012973	Smndc1	100	97.899	ENSCPBG00000012837	SMNDC1	100	97.899	Chrysemys_picta_bellii
ENSCGRG00001012973	Smndc1	100	99.160	ENSCANG00000031720	-	100	99.160	Colobus_angolensis_palliatus
ENSCGRG00001012973	Smndc1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSCGRG00001012973	Smndc1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSCGRG00001012973	Smndc1	100	100.000	ENSCGRG00000012396	Smndc1	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001012973	Smndc1	100	75.210	ENSCSEG00000015621	smndc1	100	75.210	Cynoglossus_semilaevis
ENSCGRG00001012973	Smndc1	100	76.050	ENSCVAG00000020432	smndc1	100	76.050	Cyprinodon_variegatus
ENSCGRG00001012973	Smndc1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSCGRG00001012973	Smndc1	100	99.160	ENSDNOG00000016387	SMNDC1	83	99.160	Dasypus_novemcinctus
ENSCGRG00001012973	Smndc1	100	99.160	ENSDORG00000023715	Smndc1	100	99.160	Dipodomys_ordii
ENSCGRG00001012973	Smndc1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSCGRG00001012973	Smndc1	100	71.784	ENSEBUG00000010929	smndc1	100	71.784	Eptatretus_burgeri
ENSCGRG00001012973	Smndc1	100	99.160	ENSEASG00005014930	SMNDC1	100	99.160	Equus_asinus_asinus
ENSCGRG00001012973	Smndc1	100	99.160	ENSECAG00000029973	SMNDC1	100	99.160	Equus_caballus
ENSCGRG00001012973	Smndc1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSCGRG00001012973	Smndc1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSCGRG00001012973	Smndc1	100	99.160	ENSFCAG00000027353	SMNDC1	100	99.160	Felis_catus
ENSCGRG00001012973	Smndc1	100	96.218	ENSFALG00000002306	SMNDC1	100	96.218	Ficedula_albicollis
ENSCGRG00001012973	Smndc1	100	97.899	ENSFDAG00000006468	SMNDC1	100	97.899	Fukomys_damarensis
ENSCGRG00001012973	Smndc1	100	75.630	ENSFHEG00000020150	smndc1	100	75.630	Fundulus_heteroclitus
ENSCGRG00001012973	Smndc1	100	76.050	ENSGMOG00000016585	smndc1	100	76.050	Gadus_morhua
ENSCGRG00001012973	Smndc1	100	96.218	ENSGALG00000008561	SMNDC1	100	96.218	Gallus_gallus
ENSCGRG00001012973	Smndc1	100	74.790	ENSGAFG00000011582	smndc1	100	74.790	Gambusia_affinis
ENSCGRG00001012973	Smndc1	100	75.210	ENSGACG00000009468	smndc1	100	75.210	Gasterosteus_aculeatus
ENSCGRG00001012973	Smndc1	100	97.899	ENSGAGG00000024547	SMNDC1	100	97.899	Gopherus_agassizii
ENSCGRG00001012973	Smndc1	100	99.160	ENSGGOG00000010071	SMNDC1	100	99.160	Gorilla_gorilla
ENSCGRG00001012973	Smndc1	100	76.891	ENSHBUG00000017596	smndc1	100	76.891	Haplochromis_burtoni
ENSCGRG00001012973	Smndc1	100	68.443	ENSHGLG00000001157	-	100	65.306	Heterocephalus_glaber_female
ENSCGRG00001012973	Smndc1	100	97.899	ENSHGLG00000013390	-	100	97.899	Heterocephalus_glaber_female
ENSCGRG00001012973	Smndc1	100	76.230	ENSHGLG00100004278	-	100	75.820	Heterocephalus_glaber_male
ENSCGRG00001012973	Smndc1	100	97.899	ENSHGLG00100004814	-	100	97.899	Heterocephalus_glaber_male
ENSCGRG00001012973	Smndc1	100	74.477	ENSHCOG00000000783	smndc1	100	74.477	Hippocampus_comes
ENSCGRG00001012973	Smndc1	100	76.891	ENSIPUG00000004217	smndc1	100	76.891	Ictalurus_punctatus
ENSCGRG00001012973	Smndc1	100	98.739	ENSSTOG00000006088	SMNDC1	100	98.739	Ictidomys_tridecemlineatus
ENSCGRG00001012973	Smndc1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSCGRG00001012973	Smndc1	100	74.790	ENSKMAG00000020134	smndc1	100	74.790	Kryptolebias_marmoratus
ENSCGRG00001012973	Smndc1	100	74.370	ENSLBEG00000004598	smndc1	100	74.370	Labrus_bergylta
ENSCGRG00001012973	Smndc1	100	84.034	ENSLACG00000007784	SMNDC1	100	84.034	Latimeria_chalumnae
ENSCGRG00001012973	Smndc1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSCGRG00001012973	Smndc1	100	98.739	ENSLAFG00000014353	SMNDC1	100	98.739	Loxodonta_africana
ENSCGRG00001012973	Smndc1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSCGRG00001012973	Smndc1	100	99.160	ENSMFAG00000002433	-	100	99.160	Macaca_fascicularis
ENSCGRG00001012973	Smndc1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSCGRG00001012973	Smndc1	100	99.160	ENSMMUG00000007775	SMNDC1	100	99.160	Macaca_mulatta
ENSCGRG00001012973	Smndc1	100	87.395	ENSMNEG00000033853	-	100	87.395	Macaca_nemestrina
ENSCGRG00001012973	Smndc1	100	99.160	ENSMNEG00000042963	-	100	99.160	Macaca_nemestrina
ENSCGRG00001012973	Smndc1	100	92.887	ENSMLEG00000040236	SMNDC1	100	92.469	Mandrillus_leucophaeus
ENSCGRG00001012973	Smndc1	89	72.770	ENSMAMG00000018233	smndc1	87	72.770	Mastacembelus_armatus
ENSCGRG00001012973	Smndc1	100	76.891	ENSMZEG00005027510	smndc1	100	76.891	Maylandia_zebra
ENSCGRG00001012973	Smndc1	84	96.000	ENSMGAG00000010777	SMNDC1	84	96.000	Meleagris_gallopavo
ENSCGRG00001012973	Smndc1	99	79.747	ENSMAUG00000005459	-	93	79.747	Mesocricetus_auratus
ENSCGRG00001012973	Smndc1	100	99.160	ENSMAUG00000012243	-	100	99.160	Mesocricetus_auratus
ENSCGRG00001012973	Smndc1	100	98.319	ENSMICG00000027336	-	100	98.319	Microcebus_murinus
ENSCGRG00001012973	Smndc1	100	85.294	ENSMICG00000031640	-	100	85.294	Microcebus_murinus
ENSCGRG00001012973	Smndc1	100	98.739	ENSMOCG00000002458	Smndc1	100	98.739	Microtus_ochrogaster
ENSCGRG00001012973	Smndc1	100	75.630	ENSMMOG00000008856	smndc1	100	75.630	Mola_mola
ENSCGRG00001012973	Smndc1	100	98.319	ENSMODG00000010542	SMNDC1	100	98.319	Monodelphis_domestica
ENSCGRG00001012973	Smndc1	100	76.891	ENSMALG00000017598	smndc1	100	76.891	Monopterus_albus
ENSCGRG00001012973	Smndc1	100	97.899	MGP_CAROLIEiJ_G0023072	Smndc1	100	97.899	Mus_caroli
ENSCGRG00001012973	Smndc1	100	98.319	ENSMUSG00000025024	Smndc1	100	98.319	Mus_musculus
ENSCGRG00001012973	Smndc1	100	97.899	MGP_PahariEiJ_G0014560	Smndc1	100	97.899	Mus_pahari
ENSCGRG00001012973	Smndc1	100	98.319	MGP_SPRETEiJ_G0023993	Smndc1	100	98.319	Mus_spretus
ENSCGRG00001012973	Smndc1	100	99.160	ENSMPUG00000002089	SMNDC1	100	99.160	Mustela_putorius_furo
ENSCGRG00001012973	Smndc1	100	97.899	ENSMLUG00000016007	SMNDC1	100	97.899	Myotis_lucifugus
ENSCGRG00001012973	Smndc1	100	98.319	ENSNGAG00000006833	Smndc1	100	98.319	Nannospalax_galili
ENSCGRG00001012973	Smndc1	100	76.471	ENSNBRG00000017089	smndc1	100	76.471	Neolamprologus_brichardi
ENSCGRG00001012973	Smndc1	100	99.160	ENSNLEG00000015471	SMNDC1	100	99.160	Nomascus_leucogenys
ENSCGRG00001012973	Smndc1	82	57.500	ENSMEUG00000010120	-	99	58.000	Notamacropus_eugenii
ENSCGRG00001012973	Smndc1	100	98.319	ENSOPRG00000015348	SMNDC1	100	98.319	Ochotona_princeps
ENSCGRG00001012973	Smndc1	100	68.908	ENSODEG00000007594	-	100	65.966	Octodon_degus
ENSCGRG00001012973	Smndc1	100	76.471	ENSONIG00000000434	smndc1	100	76.471	Oreochromis_niloticus
ENSCGRG00001012973	Smndc1	100	97.899	ENSOANG00000001598	SMNDC1	100	97.899	Ornithorhynchus_anatinus
ENSCGRG00001012973	Smndc1	100	98.319	ENSOCUG00000008145	-	100	98.319	Oryctolagus_cuniculus
ENSCGRG00001012973	Smndc1	100	75.210	ENSOCUG00000012274	-	100	76.891	Oryctolagus_cuniculus
ENSCGRG00001012973	Smndc1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSCGRG00001012973	Smndc1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSCGRG00001012973	Smndc1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSCGRG00001012973	Smndc1	100	77.311	ENSOMEG00000007590	smndc1	100	77.311	Oryzias_melastigma
ENSCGRG00001012973	Smndc1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSCGRG00001012973	Smndc1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSCGRG00001012973	Smndc1	100	99.160	ENSPPAG00000027815	SMNDC1	100	99.160	Pan_paniscus
ENSCGRG00001012973	Smndc1	100	99.160	ENSPPRG00000013749	SMNDC1	100	99.160	Panthera_pardus
ENSCGRG00001012973	Smndc1	100	99.160	ENSPTIG00000011451	SMNDC1	100	99.160	Panthera_tigris_altaica
ENSCGRG00001012973	Smndc1	100	99.160	ENSPTRG00000002937	SMNDC1	100	99.160	Pan_troglodytes
ENSCGRG00001012973	Smndc1	100	99.160	ENSPANG00000020805	-	100	99.160	Papio_anubis
ENSCGRG00001012973	Smndc1	100	93.277	ENSPANG00000031346	-	100	93.277	Papio_anubis
ENSCGRG00001012973	Smndc1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSCGRG00001012973	Smndc1	100	97.479	ENSPSIG00000012257	SMNDC1	100	97.479	Pelodiscus_sinensis
ENSCGRG00001012973	Smndc1	100	73.109	ENSPMGG00000015651	smndc1	100	73.109	Periophthalmus_magnuspinnatus
ENSCGRG00001012973	Smndc1	100	99.160	ENSPEMG00000022058	Smndc1	100	99.160	Peromyscus_maniculatus_bairdii
ENSCGRG00001012973	Smndc1	100	68.443	ENSPMAG00000007705	smndc1	100	68.443	Petromyzon_marinus
ENSCGRG00001012973	Smndc1	100	98.319	ENSPCIG00000018419	SMNDC1	100	98.319	Phascolarctos_cinereus
ENSCGRG00001012973	Smndc1	97	62.609	ENSPCIG00000009693	-	100	62.609	Phascolarctos_cinereus
ENSCGRG00001012973	Smndc1	100	75.210	ENSPFOG00000017113	smndc1	100	75.210	Poecilia_formosa
ENSCGRG00001012973	Smndc1	100	75.630	ENSPLAG00000010372	smndc1	100	75.630	Poecilia_latipinna
ENSCGRG00001012973	Smndc1	100	75.630	ENSPMEG00000012288	smndc1	100	75.630	Poecilia_mexicana
ENSCGRG00001012973	Smndc1	100	74.790	ENSPREG00000012279	smndc1	100	74.790	Poecilia_reticulata
ENSCGRG00001012973	Smndc1	100	99.160	ENSPPYG00000002643	SMNDC1	100	99.160	Pongo_abelii
ENSCGRG00001012973	Smndc1	81	97.409	ENSPCAG00000016183	SMNDC1	100	97.409	Procavia_capensis
ENSCGRG00001012973	Smndc1	100	98.739	ENSPCOG00000024343	SMNDC1	100	98.739	Propithecus_coquereli
ENSCGRG00001012973	Smndc1	100	75.630	ENSPVAG00000004368	SMNDC1	100	75.630	Pteropus_vampyrus
ENSCGRG00001012973	Smndc1	92	70.667	ENSPNYG00000024093	smndc1	98	70.667	Pundamilia_nyererei
ENSCGRG00001012973	Smndc1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSCGRG00001012973	Smndc1	100	97.899	ENSRNOG00000014833	Smndc1	100	97.899	Rattus_norvegicus
ENSCGRG00001012973	Smndc1	100	98.739	ENSRBIG00000000224	-	100	98.739	Rhinopithecus_bieti
ENSCGRG00001012973	Smndc1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSCGRG00001012973	Smndc1	100	99.160	ENSRROG00000044992	-	100	99.160	Rhinopithecus_roxellana
ENSCGRG00001012973	Smndc1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSCGRG00001012973	Smndc1	100	99.160	ENSSBOG00000026789	SMNDC1	100	99.160	Saimiri_boliviensis_boliviensis
ENSCGRG00001012973	Smndc1	100	98.319	ENSSHAG00000015189	SMNDC1	100	98.319	Sarcophilus_harrisii
ENSCGRG00001012973	Smndc1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSCGRG00001012973	Smndc1	100	75.630	ENSSMAG00000020118	smndc1	100	75.630	Scophthalmus_maximus
ENSCGRG00001012973	Smndc1	100	76.050	ENSSDUG00000015330	smndc1	100	76.050	Seriola_dumerili
ENSCGRG00001012973	Smndc1	100	76.050	ENSSLDG00000017325	smndc1	100	76.050	Seriola_lalandi_dorsalis
ENSCGRG00001012973	Smndc1	100	97.899	ENSSARG00000006063	SMNDC1	100	97.899	Sorex_araneus
ENSCGRG00001012973	Smndc1	100	96.218	ENSSPUG00000004574	SMNDC1	100	96.218	Sphenodon_punctatus
ENSCGRG00001012973	Smndc1	100	74.790	ENSSPAG00000000338	smndc1	100	74.790	Stegastes_partitus
ENSCGRG00001012973	Smndc1	100	98.739	ENSSSCG00000030507	SMNDC1	100	98.739	Sus_scrofa
ENSCGRG00001012973	Smndc1	100	96.218	ENSTGUG00000010599	SMNDC1	100	96.218	Taeniopygia_guttata
ENSCGRG00001012973	Smndc1	100	73.529	ENSTRUG00000023281	smndc1	100	73.529	Takifugu_rubripes
ENSCGRG00001012973	Smndc1	100	74.370	ENSTNIG00000013331	smndc1	100	74.370	Tetraodon_nigroviridis
ENSCGRG00001012973	Smndc1	100	98.739	ENSTBEG00000014337	SMNDC1	100	98.739	Tupaia_belangeri
ENSCGRG00001012973	Smndc1	100	99.160	ENSUAMG00000008142	SMNDC1	100	99.160	Ursus_americanus
ENSCGRG00001012973	Smndc1	100	99.160	ENSUMAG00000023722	SMNDC1	100	99.160	Ursus_maritimus
ENSCGRG00001012973	Smndc1	83	98.485	ENSVPAG00000003402	SMNDC1	100	98.485	Vicugna_pacos
ENSCGRG00001012973	Smndc1	100	99.160	ENSVVUG00000007820	SMNDC1	100	99.160	Vulpes_vulpes
ENSCGRG00001012973	Smndc1	60	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSCGRG00001012973	Smndc1	100	74.790	ENSXCOG00000009159	smndc1	100	74.790	Xiphophorus_couchianus
ENSCGRG00001012973	Smndc1	100	74.370	ENSXMAG00000012755	smndc1	100	74.370	Xiphophorus_maculatus