EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001013705 (Gene tree)
Gene ID: -
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 69931 bases
Position: chrscaffold_1:38359545-38429475
Accession: 100760981
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001012286	EST1	PF10374.9	4e-25	1	1
ENSCGRP00001012283	EST1	PF10374.9	4e-25	1	1
ENSCGRP00001012270	EST1	PF10374.9	4.1e-25	1	1
ENSCGRP00001012286	EST1_DNA_bind	PF10373.9	4e-55	1	1
ENSCGRP00001012283	EST1_DNA_bind	PF10373.9	4e-55	1	1
ENSCGRP00001012270	EST1_DNA_bind	PF10373.9	4.2e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001016503	-	6301	-	ENSCGRP00001012270	1165 (aa)	XP_003502899	UPI00022F4A90
ENSCGRT00001016519	-	3405	-	ENSCGRP00001012286	1134 (aa)	-	-
ENSCGRT00001016516	-	3423	-	ENSCGRP00001012283	1140 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001013705's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001013705's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001013705	Smg7	100	96.141	ENSG00000116698	SMG7	100	96.429	Homo_sapiens
ENSCGRG00001013705	Smg7	88	73.565	ENSAPOG00000009611	smg7	95	73.565	Acanthochromis_polyacanthus
ENSCGRG00001013705	Smg7	99	94.243	ENSAMEG00000002357	SMG7	99	94.420	Ailuropoda_melanoleuca
ENSCGRG00001013705	Smg7	97	64.114	ENSACIG00000015152	smg7	97	69.500	Amphilophus_citrinellus
ENSCGRG00001013705	Smg7	99	65.641	ENSAOCG00000013538	smg7	99	65.983	Amphiprion_ocellaris
ENSCGRG00001013705	Smg7	99	65.756	ENSAPEG00000007851	smg7	99	66.097	Amphiprion_percula
ENSCGRG00001013705	Smg7	99	65.140	ENSATEG00000006931	smg7	99	65.649	Anabas_testudineus
ENSCGRG00001013705	Smg7	100	87.314	ENSAPLG00000015811	SMG7	100	87.314	Anas_platyrhynchos
ENSCGRG00001013705	Smg7	100	83.876	ENSACAG00000014989	SMG7	100	83.876	Anolis_carolinensis
ENSCGRG00001013705	Smg7	100	94.811	ENSANAG00000028114	SMG7	100	94.811	Aotus_nancymaae
ENSCGRG00001013705	Smg7	99	64.516	ENSACLG00000022079	smg7	99	65.210	Astatotilapia_calliptera
ENSCGRG00001013705	Smg7	99	66.898	ENSAMXG00000020809	smg7	99	66.349	Astyanax_mexicanus
ENSCGRG00001013705	Smg7	100	94.854	ENSBTAG00000008003	SMG7	100	93.931	Bos_taurus
ENSCGRG00001013705	Smg7	100	95.712	ENSCJAG00000005135	SMG7	100	95.712	Callithrix_jacchus
ENSCGRG00001013705	Smg7	100	95.369	ENSCAFG00000013276	SMG7	99	95.540	Canis_familiaris
ENSCGRG00001013705	Smg7	100	95.369	ENSCAFG00020015475	SMG7	99	95.540	Canis_lupus_dingo
ENSCGRG00001013705	Smg7	99	94.621	ENSCHIG00000018192	SMG7	99	94.704	Capra_hircus
ENSCGRG00001013705	Smg7	100	95.197	ENSTSYG00000002667	SMG7	99	95.197	Carlito_syrichta
ENSCGRG00001013705	Smg7	100	95.712	ENSCPOG00000008906	SMG7	100	95.883	Cavia_porcellus
ENSCGRG00001013705	Smg7	100	94.899	ENSCCAG00000028596	SMG7	100	94.899	Cebus_capucinus
ENSCGRG00001013705	Smg7	100	96.312	ENSCATG00000011063	SMG7	99	96.312	Cercocebus_atys
ENSCGRG00001013705	Smg7	100	95.540	ENSCLAG00000010751	SMG7	100	95.474	Chinchilla_lanigera
ENSCGRG00001013705	Smg7	100	96.141	ENSCSAG00000012654	SMG7	99	96.141	Chlorocebus_sabaeus
ENSCGRG00001013705	Smg7	92	87.870	ENSCHOG00000010522	SMG7	93	88.157	Choloepus_hoffmanni
ENSCGRG00001013705	Smg7	100	89.921	ENSCPBG00000015724	SMG7	100	89.921	Chrysemys_picta_bellii
ENSCGRG00001013705	Smg7	99	95.124	ENSCANG00000015680	SMG7	99	95.124	Colobus_angolensis_palliatus
ENSCGRG00001013705	Smg7	99	100.000	ENSCGRG00000018401	Smg7	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001013705	Smg7	95	68.500	ENSCVAG00000011842	smg7	99	68.000	Cyprinodon_variegatus
ENSCGRG00001013705	Smg7	99	66.638	ENSDARG00000060767	smg7	99	66.551	Danio_rerio
ENSCGRG00001013705	Smg7	100	95.267	ENSDORG00000007331	Smg7	100	95.300	Dipodomys_ordii
ENSCGRG00001013705	Smg7	97	94.565	ENSETEG00000002654	SMG7	100	94.565	Echinops_telfairi
ENSCGRG00001013705	Smg7	100	96.231	ENSEASG00005006524	SMG7	100	96.231	Equus_asinus_asinus
ENSCGRG00001013705	Smg7	100	96.144	ENSECAG00000004313	SMG7	99	97.802	Equus_caballus
ENSCGRG00001013705	Smg7	97	94.208	ENSEEUG00000002024	SMG7	94	94.027	Erinaceus_europaeus
ENSCGRG00001013705	Smg7	92	76.436	ENSELUG00000010293	smg7	99	65.099	Esox_lucius
ENSCGRG00001013705	Smg7	100	95.626	ENSFCAG00000010900	SMG7	100	95.793	Felis_catus
ENSCGRG00001013705	Smg7	98	82.653	ENSFALG00000003047	SMG7	100	82.568	Ficedula_albicollis
ENSCGRG00001013705	Smg7	99	95.431	ENSFDAG00000012121	SMG7	99	95.897	Fukomys_damarensis
ENSCGRG00001013705	Smg7	99	63.955	ENSFHEG00000011073	smg7	99	63.413	Fundulus_heteroclitus
ENSCGRG00001013705	Smg7	89	67.007	ENSGMOG00000004916	smg7	92	67.007	Gadus_morhua
ENSCGRG00001013705	Smg7	100	87.762	ENSGALG00000004667	SMG7	100	87.675	Gallus_gallus
ENSCGRG00001013705	Smg7	99	63.894	ENSGAFG00000019000	smg7	99	63.722	Gambusia_affinis
ENSCGRG00001013705	Smg7	97	64.073	ENSGACG00000001634	smg7	99	64.392	Gasterosteus_aculeatus
ENSCGRG00001013705	Smg7	100	96.398	ENSGGOG00000002342	SMG7	99	96.398	Gorilla_gorilla
ENSCGRG00001013705	Smg7	99	64.327	ENSHBUG00000003726	smg7	97	71.574	Haplochromis_burtoni
ENSCGRG00001013705	Smg7	100	94.811	ENSHGLG00000009353	SMG7	100	95.722	Heterocephalus_glaber_female
ENSCGRG00001013705	Smg7	100	88.081	ENSHGLG00100004878	-	100	88.081	Heterocephalus_glaber_male
ENSCGRG00001013705	Smg7	100	94.899	ENSHGLG00100009637	-	100	94.899	Heterocephalus_glaber_male
ENSCGRG00001013705	Smg7	99	66.609	ENSIPUG00000016997	smg7	99	66.667	Ictalurus_punctatus
ENSCGRG00001013705	Smg7	100	96.319	ENSSTOG00000000401	SMG7	100	96.345	Ictidomys_tridecemlineatus
ENSCGRG00001013705	Smg7	100	95.088	ENSJJAG00000012351	Smg7	100	95.088	Jaculus_jaculus
ENSCGRG00001013705	Smg7	90	69.000	ENSKMAG00000004900	smg7	97	69.000	Kryptolebias_marmoratus
ENSCGRG00001013705	Smg7	52	61.706	ENSLBEG00000005220	-	75	63.398	Labrus_bergylta
ENSCGRG00001013705	Smg7	99	65.259	ENSLBEG00000002983	smg7	99	65.517	Labrus_bergylta
ENSCGRG00001013705	Smg7	99	75.130	ENSLACG00000000972	SMG7	99	75.239	Latimeria_chalumnae
ENSCGRG00001013705	Smg7	99	67.054	ENSLOCG00000002010	smg7	99	67.475	Lepisosteus_oculatus
ENSCGRG00001013705	Smg7	99	95.760	ENSLAFG00000008186	SMG7	100	95.735	Loxodonta_africana
ENSCGRG00001013705	Smg7	100	96.398	ENSMFAG00000031653	SMG7	100	96.319	Macaca_fascicularis
ENSCGRG00001013705	Smg7	100	96.312	ENSMMUG00000018458	SMG7	99	96.312	Macaca_mulatta
ENSCGRG00001013705	Smg7	100	95.251	ENSMNEG00000034798	SMG7	100	95.251	Macaca_nemestrina
ENSCGRG00001013705	Smg7	100	96.312	ENSMLEG00000037170	SMG7	99	96.312	Mandrillus_leucophaeus
ENSCGRG00001013705	Smg7	88	64.100	ENSMAMG00000018733	smg7	85	64.860	Mastacembelus_armatus
ENSCGRG00001013705	Smg7	99	64.987	ENSMZEG00005015247	smg7	99	65.210	Maylandia_zebra
ENSCGRG00001013705	Smg7	99	87.633	ENSMGAG00000001561	SMG7	99	87.633	Meleagris_gallopavo
ENSCGRG00001013705	Smg7	100	99.211	ENSMAUG00000019484	Smg7	100	99.216	Mesocricetus_auratus
ENSCGRG00001013705	Smg7	100	95.163	ENSMICG00000007145	SMG7	100	96.084	Microcebus_murinus
ENSCGRG00001013705	Smg7	100	98.421	ENSMOCG00000020748	Smg7	100	98.432	Microtus_ochrogaster
ENSCGRG00001013705	Smg7	99	64.069	ENSMMOG00000001524	smg7	99	63.573	Mola_mola
ENSCGRG00001013705	Smg7	92	91.461	ENSMODG00000007139	SMG7	99	91.461	Monodelphis_domestica
ENSCGRG00001013705	Smg7	99	64.893	ENSMALG00000000061	smg7	95	67.164	Monopterus_albus
ENSCGRG00001013705	Smg7	100	98.333	MGP_CAROLIEiJ_G0014704	Smg7	100	98.345	Mus_caroli
ENSCGRG00001013705	Smg7	100	98.158	ENSMUSG00000042772	Smg7	100	98.171	Mus_musculus
ENSCGRG00001013705	Smg7	100	98.246	MGP_PahariEiJ_G0027940	Smg7	100	98.258	Mus_pahari
ENSCGRG00001013705	Smg7	100	98.246	MGP_SPRETEiJ_G0015511	Smg7	100	98.258	Mus_spretus
ENSCGRG00001013705	Smg7	98	95.276	ENSMPUG00000011732	SMG7	97	95.455	Mustela_putorius_furo
ENSCGRG00001013705	Smg7	99	94.881	ENSMLUG00000015417	SMG7	99	94.881	Myotis_lucifugus
ENSCGRG00001013705	Smg7	100	96.039	ENSNGAG00000009836	Smg7	100	96.951	Nannospalax_galili
ENSCGRG00001013705	Smg7	98	60.556	ENSNBRG00000024343	smg7	98	70.297	Neolamprologus_brichardi
ENSCGRG00001013705	Smg7	100	96.312	ENSNLEG00000018018	SMG7	99	96.312	Nomascus_leucogenys
ENSCGRG00001013705	Smg7	77	85.290	ENSMEUG00000004681	SMG7	73	90.650	Notamacropus_eugenii
ENSCGRG00001013705	Smg7	96	83.653	ENSOPRG00000013942	SMG7	96	83.196	Ochotona_princeps
ENSCGRG00001013705	Smg7	100	95.793	ENSODEG00000010390	SMG7	100	95.822	Octodon_degus
ENSCGRG00001013705	Smg7	99	64.298	ENSONIG00000000277	smg7	99	64.902	Oreochromis_niloticus
ENSCGRG00001013705	Smg7	98	90.426	ENSOANG00000000994	SMG7	100	90.514	Ornithorhynchus_anatinus
ENSCGRG00001013705	Smg7	100	88.593	ENSOCUG00000005887	SMG7	95	88.765	Oryctolagus_cuniculus
ENSCGRG00001013705	Smg7	99	63.258	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
ENSCGRG00001013705	Smg7	99	63.605	ENSORLG00020015779	smg7	99	63.518	Oryzias_latipes_hni
ENSCGRG00001013705	Smg7	99	64.686	ENSORLG00015012289	smg7	99	63.126	Oryzias_latipes_hsok
ENSCGRG00001013705	Smg7	99	62.812	ENSOMEG00000002328	smg7	99	62.812	Oryzias_melastigma
ENSCGRG00001013705	Smg7	97	95.467	ENSOGAG00000003107	SMG7	94	95.648	Otolemur_garnettii
ENSCGRG00001013705	Smg7	100	94.940	ENSOARG00000001352	SMG7	99	94.940	Ovis_aries
ENSCGRG00001013705	Smg7	100	95.251	ENSPPAG00000031619	SMG7	100	95.251	Pan_paniscus
ENSCGRG00001013705	Smg7	100	95.798	ENSPPRG00000011222	SMG7	100	95.075	Panthera_pardus
ENSCGRG00001013705	Smg7	96	95.442	ENSPTIG00000007242	SMG7	100	91.354	Panthera_tigris_altaica
ENSCGRG00001013705	Smg7	100	95.251	ENSPTRG00000001764	SMG7	100	95.251	Pan_troglodytes
ENSCGRG00001013705	Smg7	100	96.312	ENSPANG00000004520	SMG7	99	96.312	Papio_anubis
ENSCGRG00001013705	Smg7	99	64.676	ENSPKIG00000007242	smg7	99	69.000	Paramormyrops_kingsleyae
ENSCGRG00001013705	Smg7	99	91.174	ENSPSIG00000012201	SMG7	99	90.909	Pelodiscus_sinensis
ENSCGRG00001013705	Smg7	71	42.553	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
ENSCGRG00001013705	Smg7	100	97.544	ENSPEMG00000011315	Smg7	100	97.561	Peromyscus_maniculatus_bairdii
ENSCGRG00001013705	Smg7	100	91.652	ENSPCIG00000003786	SMG7	100	91.652	Phascolarctos_cinereus
ENSCGRG00001013705	Smg7	99	62.758	ENSPFOG00000019219	smg7	99	62.675	Poecilia_formosa
ENSCGRG00001013705	Smg7	99	64.065	ENSPLAG00000001446	smg7	99	63.894	Poecilia_latipinna
ENSCGRG00001013705	Smg7	96	63.242	ENSPMEG00000005218	smg7	99	63.065	Poecilia_mexicana
ENSCGRG00001013705	Smg7	87	60.728	ENSPREG00000019039	smg7	91	60.669	Poecilia_reticulata
ENSCGRG00001013705	Smg7	100	95.339	ENSPPYG00000000427	SMG7	100	95.339	Pongo_abelii
ENSCGRG00001013705	Smg7	95	84.410	ENSPCAG00000008360	SMG7	94	84.410	Procavia_capensis
ENSCGRG00001013705	Smg7	100	96.055	ENSPCOG00000011996	SMG7	99	96.055	Propithecus_coquereli
ENSCGRG00001013705	Smg7	92	89.675	ENSPVAG00000000851	SMG7	89	90.000	Pteropus_vampyrus
ENSCGRG00001013705	Smg7	99	65.322	ENSPNYG00000007643	smg7	99	65.150	Pundamilia_nyererei
ENSCGRG00001013705	Smg7	99	67.558	ENSPNAG00000011374	smg7	98	68.182	Pygocentrus_nattereri
ENSCGRG00001013705	Smg7	100	97.897	ENSRNOG00000027962	Smg7	100	97.897	Rattus_norvegicus
ENSCGRG00001013705	Smg7	100	96.226	ENSRBIG00000036316	SMG7	99	96.226	Rhinopithecus_bieti
ENSCGRG00001013705	Smg7	100	96.226	ENSRROG00000035719	SMG7	100	96.144	Rhinopithecus_roxellana
ENSCGRG00001013705	Smg7	100	95.706	ENSSBOG00000023454	SMG7	100	95.706	Saimiri_boliviensis_boliviensis
ENSCGRG00001013705	Smg7	100	91.220	ENSSHAG00000013147	SMG7	100	91.220	Sarcophilus_harrisii
ENSCGRG00001013705	Smg7	99	68.728	ENSSFOG00015017252	smg7	99	75.263	Scleropages_formosus
ENSCGRG00001013705	Smg7	99	65.086	ENSSMAG00000006067	smg7	99	65.060	Scophthalmus_maximus
ENSCGRG00001013705	Smg7	95	71.071	ENSSDUG00000017543	smg7	99	65.287	Seriola_dumerili
ENSCGRG00001013705	Smg7	99	88.604	ENSSPUG00000002064	SMG7	99	88.604	Sphenodon_punctatus
ENSCGRG00001013705	Smg7	100	65.229	ENSSPAG00000008733	smg7	100	65.491	Stegastes_partitus
ENSCGRG00001013705	Smg7	100	95.706	ENSSSCG00000015558	SMG7	100	95.706	Sus_scrofa
ENSCGRG00001013705	Smg7	99	87.665	ENSTGUG00000003928	SMG7	100	87.577	Taeniopygia_guttata
ENSCGRG00001013705	Smg7	99	63.162	ENSTNIG00000002802	smg7	99	63.038	Tetraodon_nigroviridis
ENSCGRG00001013705	Smg7	77	93.644	ENSTBEG00000003220	SMG7	75	93.644	Tupaia_belangeri
ENSCGRG00001013705	Smg7	96	95.434	ENSTTRG00000014778	SMG7	94	95.434	Tursiops_truncatus
ENSCGRG00001013705	Smg7	96	91.583	ENSUAMG00000017473	SMG7	100	91.766	Ursus_americanus
ENSCGRG00001013705	Smg7	96	95.450	ENSUMAG00000016389	SMG7	100	95.632	Ursus_maritimus
ENSCGRG00001013705	Smg7	100	95.530	ENSVVUG00000008976	SMG7	100	95.706	Vulpes_vulpes
ENSCGRG00001013705	Smg7	100	69.845	ENSXETG00000012528	smg7	100	70.078	Xenopus_tropicalis
ENSCGRG00001013705	Smg7	99	64.003	ENSXMAG00000007123	smg7	99	64.089	Xiphophorus_maculatus