EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001014436 (Gene tree)
Gene ID: -
Gene Symbol: Lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 4916 bases
Position: chrscaffold_29:14301076-14305991
Accession: 1354692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001013246	LSM	PF01423.22	8.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001017486	-	318	-	ENSCGRP00001013249	105 (aa)	-	-
ENSCGRT00001017483	-	417	-	ENSCGRP00001013246	138 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001014436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001014436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001014436	Lsm4	70	35.644	ENSCGRG00001013932	Lsm2	92	34.831
ENSCGRG00001014436	Lsm4	65	31.522	ENSCGRG00001021990	Snrpd3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001014436	Lsm4	100	95.683	ENSG00000130520	LSM4	100	95.683	Homo_sapiens
ENSCGRG00001014436	Lsm4	71	93.939	ENSAPOG00000005643	lsm4	58	95.455	Acanthochromis_polyacanthus
ENSCGRG00001014436	Lsm4	99	95.652	ENSAMEG00000011162	LSM4	95	95.652	Ailuropoda_melanoleuca
ENSCGRG00001014436	Lsm4	99	74.825	ENSAOCG00000006414	lsm4	59	95.455	Amphiprion_ocellaris
ENSCGRG00001014436	Lsm4	71	93.939	ENSAPEG00000006238	lsm4	59	95.455	Amphiprion_percula
ENSCGRG00001014436	Lsm4	71	93.939	ENSATEG00000016559	lsm4	58	95.455	Anabas_testudineus
ENSCGRG00001014436	Lsm4	100	95.683	ENSANAG00000034659	LSM4	100	95.683	Aotus_nancymaae
ENSCGRG00001014436	Lsm4	79	81.452	ENSACLG00000022738	lsm4	60	95.455	Astatotilapia_calliptera
ENSCGRG00001014436	Lsm4	99	81.884	ENSAMXG00000016932	lsm4	62	95.455	Astyanax_mexicanus
ENSCGRG00001014436	Lsm4	100	95.683	ENSBTAG00000008578	LSM4	100	95.683	Bos_taurus
ENSCGRG00001014436	Lsm4	60	73.494	WBGene00003078	lsm-4	67	73.494	Caenorhabditis_elegans
ENSCGRG00001014436	Lsm4	100	95.683	ENSCJAG00000014171	LSM4	100	95.683	Callithrix_jacchus
ENSCGRG00001014436	Lsm4	99	95.652	ENSCAFG00000014900	LSM4	90	95.652	Canis_familiaris
ENSCGRG00001014436	Lsm4	100	95.683	ENSCAFG00020012137	LSM4	100	95.683	Canis_lupus_dingo
ENSCGRG00001014436	Lsm4	99	95.652	ENSCHIG00000010928	LSM4	91	95.652	Capra_hircus
ENSCGRG00001014436	Lsm4	100	96.403	ENSTSYG00000030906	LSM4	100	96.403	Carlito_syrichta
ENSCGRG00001014436	Lsm4	100	94.964	ENSCAPG00000014140	LSM4	100	94.964	Cavia_aperea
ENSCGRG00001014436	Lsm4	100	94.964	ENSCPOG00000024117	LSM4	100	94.964	Cavia_porcellus
ENSCGRG00001014436	Lsm4	100	95.683	ENSCCAG00000036308	LSM4	100	95.683	Cebus_capucinus
ENSCGRG00001014436	Lsm4	100	95.683	ENSCATG00000029311	LSM4	100	95.683	Cercocebus_atys
ENSCGRG00001014436	Lsm4	100	92.086	ENSCLAG00000010828	LSM4	100	92.086	Chinchilla_lanigera
ENSCGRG00001014436	Lsm4	100	95.683	ENSCSAG00000005370	LSM4	100	95.683	Chlorocebus_sabaeus
ENSCGRG00001014436	Lsm4	100	76.087	ENSCPBG00000012925	LSM4	100	76.087	Chrysemys_picta_bellii
ENSCGRG00001014436	Lsm4	60	92.771	ENSCING00000007519	-	69	90.909	Ciona_intestinalis
ENSCGRG00001014436	Lsm4	60	93.976	ENSCSAVG00000008596	-	70	92.045	Ciona_savignyi
ENSCGRG00001014436	Lsm4	100	95.683	ENSCANG00000043686	LSM4	100	95.683	Colobus_angolensis_palliatus
ENSCGRG00001014436	Lsm4	100	99.275	ENSCGRG00000009398	Lsm4	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001014436	Lsm4	70	93.814	ENSCSEG00000016127	lsm4	62	95.455	Cynoglossus_semilaevis
ENSCGRG00001014436	Lsm4	88	72.358	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSCGRG00001014436	Lsm4	99	75.362	ENSCVAG00000010601	lsm4	62	95.455	Cyprinodon_variegatus
ENSCGRG00001014436	Lsm4	97	76.596	ENSDARG00000023852	lsm4	62	95.455	Danio_rerio
ENSCGRG00001014436	Lsm4	100	94.964	ENSDORG00000024225	Lsm4	100	94.964	Dipodomys_ordii
ENSCGRG00001014436	Lsm4	64	87.778	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSCGRG00001014436	Lsm4	89	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
ENSCGRG00001014436	Lsm4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSCGRG00001014436	Lsm4	100	95.683	ENSECAG00000010141	LSM4	57	95.683	Equus_caballus
ENSCGRG00001014436	Lsm4	95	82.090	ENSELUG00000012821	lsm4	66	95.402	Esox_lucius
ENSCGRG00001014436	Lsm4	100	95.683	ENSFCAG00000040580	LSM4	100	95.683	Felis_catus
ENSCGRG00001014436	Lsm4	99	75.182	ENSFALG00000009478	LSM4	99	75.182	Ficedula_albicollis
ENSCGRG00001014436	Lsm4	99	92.754	ENSFDAG00000010124	LSM4	100	92.754	Fukomys_damarensis
ENSCGRG00001014436	Lsm4	69	93.750	ENSGMOG00000007729	lsm4	59	95.402	Gadus_morhua
ENSCGRG00001014436	Lsm4	100	75.362	ENSGALG00000003385	LSM4	100	75.362	Gallus_gallus
ENSCGRG00001014436	Lsm4	79	81.452	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSCGRG00001014436	Lsm4	68	95.789	ENSGACG00000008140	lsm4	59	95.455	Gasterosteus_aculeatus
ENSCGRG00001014436	Lsm4	100	76.087	ENSGAGG00000017812	LSM4	100	76.087	Gopherus_agassizii
ENSCGRG00001014436	Lsm4	100	95.683	ENSGGOG00000012914	-	100	95.683	Gorilla_gorilla
ENSCGRG00001014436	Lsm4	100	92.806	ENSHGLG00000006568	LSM4	100	92.806	Heterocephalus_glaber_female
ENSCGRG00001014436	Lsm4	66	96.739	ENSHGLG00100007894	LSM4	99	96.739	Heterocephalus_glaber_male
ENSCGRG00001014436	Lsm4	99	75.912	ENSHCOG00000008819	lsm4	62	95.455	Hippocampus_comes
ENSCGRG00001014436	Lsm4	99	81.159	ENSIPUG00000005368	Lsm4	62	95.455	Ictalurus_punctatus
ENSCGRG00001014436	Lsm4	100	95.683	ENSSTOG00000016494	LSM4	100	95.683	Ictidomys_tridecemlineatus
ENSCGRG00001014436	Lsm4	100	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSCGRG00001014436	Lsm4	61	95.238	ENSKMAG00000005073	lsm4	61	94.318	Kryptolebias_marmoratus
ENSCGRG00001014436	Lsm4	71	93.939	ENSLBEG00000027930	lsm4	59	95.455	Labrus_bergylta
ENSCGRG00001014436	Lsm4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
ENSCGRG00001014436	Lsm4	93	82.946	ENSLOCG00000002025	lsm4	62	95.455	Lepisosteus_oculatus
ENSCGRG00001014436	Lsm4	99	94.928	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
ENSCGRG00001014436	Lsm4	100	95.683	ENSMFAG00000031194	LSM4	100	95.683	Macaca_fascicularis
ENSCGRG00001014436	Lsm4	100	95.683	ENSMMUG00000004405	LSM4	100	95.683	Macaca_mulatta
ENSCGRG00001014436	Lsm4	100	95.683	ENSMNEG00000042899	LSM4	100	95.683	Macaca_nemestrina
ENSCGRG00001014436	Lsm4	100	95.683	ENSMLEG00000027948	LSM4	100	95.683	Mandrillus_leucophaeus
ENSCGRG00001014436	Lsm4	99	77.536	ENSMAMG00000006190	lsm4	62	95.455	Mastacembelus_armatus
ENSCGRG00001014436	Lsm4	79	81.452	ENSMZEG00005016420	lsm4	60	95.455	Maylandia_zebra
ENSCGRG00001014436	Lsm4	99	80.576	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSCGRG00001014436	Lsm4	100	94.964	ENSMICG00000000222	LSM4	100	94.964	Microcebus_murinus
ENSCGRG00001014436	Lsm4	100	99.275	ENSMOCG00000020861	Lsm4	100	99.275	Microtus_ochrogaster
ENSCGRG00001014436	Lsm4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSCGRG00001014436	Lsm4	99	73.913	ENSMALG00000018159	lsm4	62	94.318	Monopterus_albus
ENSCGRG00001014436	Lsm4	100	99.275	MGP_CAROLIEiJ_G0031158	Lsm4	100	99.275	Mus_caroli
ENSCGRG00001014436	Lsm4	100	99.275	ENSMUSG00000031848	Lsm4	100	99.275	Mus_musculus
ENSCGRG00001014436	Lsm4	100	99.275	MGP_PahariEiJ_G0021623	Lsm4	100	99.275	Mus_pahari
ENSCGRG00001014436	Lsm4	100	99.275	MGP_SPRETEiJ_G0032276	Lsm4	100	99.275	Mus_spretus
ENSCGRG00001014436	Lsm4	100	95.683	ENSMPUG00000015589	LSM4	100	95.683	Mustela_putorius_furo
ENSCGRG00001014436	Lsm4	99	95.652	ENSMLUG00000004010	LSM4	99	95.652	Myotis_lucifugus
ENSCGRG00001014436	Lsm4	100	98.561	ENSNGAG00000008644	Lsm4	100	98.561	Nannospalax_galili
ENSCGRG00001014436	Lsm4	70	93.878	ENSNBRG00000022150	lsm4	54	95.402	Neolamprologus_brichardi
ENSCGRG00001014436	Lsm4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSCGRG00001014436	Lsm4	89	89.516	ENSOPRG00000005575	LSM4	100	79.839	Ochotona_princeps
ENSCGRG00001014436	Lsm4	100	70.290	ENSODEG00000011712	-	100	70.290	Octodon_degus
ENSCGRG00001014436	Lsm4	100	92.806	ENSODEG00000020549	-	100	92.806	Octodon_degus
ENSCGRG00001014436	Lsm4	100	83.333	ENSODEG00000004519	-	100	73.188	Octodon_degus
ENSCGRG00001014436	Lsm4	79	81.452	ENSONIG00000012724	lsm4	60	95.455	Oreochromis_niloticus
ENSCGRG00001014436	Lsm4	62	90.110	ENSOANG00000007434	LSM4	78	90.110	Ornithorhynchus_anatinus
ENSCGRG00001014436	Lsm4	100	76.259	ENSORLG00000008391	lsm4	61	94.318	Oryzias_latipes
ENSCGRG00001014436	Lsm4	100	76.259	ENSORLG00020014829	lsm4	61	94.318	Oryzias_latipes_hni
ENSCGRG00001014436	Lsm4	100	76.259	ENSORLG00015010205	lsm4	61	94.318	Oryzias_latipes_hsok
ENSCGRG00001014436	Lsm4	100	80.576	ENSOMEG00000003606	lsm4	61	94.318	Oryzias_melastigma
ENSCGRG00001014436	Lsm4	71	94.949	ENSOGAG00000027992	LSM4	60	96.552	Otolemur_garnettii
ENSCGRG00001014436	Lsm4	62	96.552	ENSOARG00000012553	LSM4	60	96.552	Ovis_aries
ENSCGRG00001014436	Lsm4	100	95.683	ENSPPAG00000044045	-	100	95.683	Pan_paniscus
ENSCGRG00001014436	Lsm4	100	95.683	ENSPPRG00000018264	LSM4	100	95.683	Panthera_pardus
ENSCGRG00001014436	Lsm4	99	95.652	ENSPTIG00000006306	LSM4	100	95.652	Panthera_tigris_altaica
ENSCGRG00001014436	Lsm4	100	95.683	ENSPTRG00000031470	LSM4	100	95.683	Pan_troglodytes
ENSCGRG00001014436	Lsm4	100	95.683	ENSPANG00000014399	LSM4	100	95.683	Papio_anubis
ENSCGRG00001014436	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	95.455	Paramormyrops_kingsleyae
ENSCGRG00001014436	Lsm4	99	75.182	ENSPSIG00000012358	LSM4	100	75.182	Pelodiscus_sinensis
ENSCGRG00001014436	Lsm4	100	99.275	ENSPEMG00000001358	Lsm4	100	99.275	Peromyscus_maniculatus_bairdii
ENSCGRG00001014436	Lsm4	99	78.571	ENSPLAG00000016267	lsm4	62	95.455	Poecilia_latipinna
ENSCGRG00001014436	Lsm4	99	82.857	ENSPMEG00000016378	lsm4	63	95.402	Poecilia_mexicana
ENSCGRG00001014436	Lsm4	100	95.683	ENSPPYG00000009736	LSM4	100	95.683	Pongo_abelii
ENSCGRG00001014436	Lsm4	89	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
ENSCGRG00001014436	Lsm4	100	94.964	ENSPCOG00000019837	LSM4	100	94.964	Propithecus_coquereli
ENSCGRG00001014436	Lsm4	100	95.683	ENSPVAG00000015383	LSM4	100	95.683	Pteropus_vampyrus
ENSCGRG00001014436	Lsm4	79	81.452	ENSPNYG00000016794	lsm4	60	95.455	Pundamilia_nyererei
ENSCGRG00001014436	Lsm4	96	80.597	ENSPNAG00000016598	lsm4	65	95.402	Pygocentrus_nattereri
ENSCGRG00001014436	Lsm4	100	99.275	ENSRNOG00000019572	Lsm4	100	99.275	Rattus_norvegicus
ENSCGRG00001014436	Lsm4	100	95.683	ENSRBIG00000024717	LSM4	100	95.683	Rhinopithecus_bieti
ENSCGRG00001014436	Lsm4	100	95.683	ENSRROG00000045706	LSM4	100	95.683	Rhinopithecus_roxellana
ENSCGRG00001014436	Lsm4	90	95.200	ENSSBOG00000022455	LSM4	100	95.200	Saimiri_boliviensis_boliviensis
ENSCGRG00001014436	Lsm4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSCGRG00001014436	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	95.455	Scleropages_formosus
ENSCGRG00001014436	Lsm4	71	92.929	ENSSMAG00000021020	lsm4	59	95.455	Scophthalmus_maximus
ENSCGRG00001014436	Lsm4	71	93.939	ENSSDUG00000009588	lsm4	53	95.455	Seriola_dumerili
ENSCGRG00001014436	Lsm4	71	93.939	ENSSLDG00000006827	lsm4	52	95.455	Seriola_lalandi_dorsalis
ENSCGRG00001014436	Lsm4	62	95.402	ENSSPUG00000010166	LSM4	56	95.402	Sphenodon_punctatus
ENSCGRG00001014436	Lsm4	71	93.939	ENSSPAG00000011615	lsm4	58	95.455	Stegastes_partitus
ENSCGRG00001014436	Lsm4	100	95.683	ENSSSCG00000034314	LSM4	100	95.683	Sus_scrofa
ENSCGRG00001014436	Lsm4	79	79.839	ENSTRUG00000021737	lsm4	62	94.318	Takifugu_rubripes
ENSCGRG00001014436	Lsm4	99	79.286	ENSTNIG00000010191	lsm4	61	95.455	Tetraodon_nigroviridis
ENSCGRG00001014436	Lsm4	99	95.652	ENSUAMG00000000665	LSM4	99	95.652	Ursus_americanus
ENSCGRG00001014436	Lsm4	100	95.683	ENSUMAG00000009013	LSM4	100	95.683	Ursus_maritimus
ENSCGRG00001014436	Lsm4	99	95.652	ENSVVUG00000008136	LSM4	71	95.652	Vulpes_vulpes
ENSCGRG00001014436	Lsm4	100	89.928	ENSXETG00000024933	lsm4	100	74.638	Xenopus_tropicalis