EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001017387 (Gene tree)
Gene ID: -
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 12237 bases
Position: chrscaffold_21:32057171-32069407
Accession: 1914281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001017313	Smg4_UPF3	PF03467.15	3.4e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001021557	-	1980	-	ENSCGRP00001017313	422 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001017387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001017387's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001017387	Upf3a	99	70.507	ENSG00000169062	UPF3A	99	74.038	Homo_sapiens
ENSCGRG00001017387	Upf3a	87	56.736	ENSAPOG00000013484	upf3a	82	58.947	Acanthochromis_polyacanthus
ENSCGRG00001017387	Upf3a	93	70.443	ENSAMEG00000004259	UPF3A	89	70.443	Ailuropoda_melanoleuca
ENSCGRG00001017387	Upf3a	89	57.330	ENSACIG00000020468	upf3a	79	71.795	Amphilophus_citrinellus
ENSCGRG00001017387	Upf3a	56	61.200	ENSAOCG00000000706	upf3b	54	61.200	Amphiprion_ocellaris
ENSCGRG00001017387	Upf3a	87	58.445	ENSAOCG00000020784	upf3a	81	58.684	Amphiprion_ocellaris
ENSCGRG00001017387	Upf3a	87	58.445	ENSAPEG00000003519	upf3a	81	58.684	Amphiprion_percula
ENSCGRG00001017387	Upf3a	89	58.421	ENSATEG00000005843	upf3a	81	60.000	Anabas_testudineus
ENSCGRG00001017387	Upf3a	84	65.574	ENSACAG00000001540	UPF3A	88	65.574	Anolis_carolinensis
ENSCGRG00001017387	Upf3a	99	66.359	ENSANAG00000021713	UPF3A	91	66.820	Aotus_nancymaae
ENSCGRG00001017387	Upf3a	89	57.743	ENSACLG00000026274	upf3a	79	59.318	Astatotilapia_calliptera
ENSCGRG00001017387	Upf3a	88	60.267	ENSAMXG00000002608	upf3a	82	60.267	Astyanax_mexicanus
ENSCGRG00001017387	Upf3a	95	68.116	ENSCJAG00000019102	UPF3A	91	68.664	Callithrix_jacchus
ENSCGRG00001017387	Upf3a	100	69.725	ENSCAFG00000006504	UPF3A	94	69.725	Canis_familiaris
ENSCGRG00001017387	Upf3a	100	70.413	ENSCAFG00020014268	UPF3A	91	70.413	Canis_lupus_dingo
ENSCGRG00001017387	Upf3a	99	65.287	ENSCHIG00000008682	UPF3A	86	65.517	Capra_hircus
ENSCGRG00001017387	Upf3a	74	65.337	ENSTSYG00000001918	UPF3A	87	65.337	Carlito_syrichta
ENSCGRG00001017387	Upf3a	89	71.134	ENSCPOG00000006824	UPF3A	90	71.134	Cavia_porcellus
ENSCGRG00001017387	Upf3a	99	68.664	ENSCCAG00000018406	UPF3A	91	69.124	Cebus_capucinus
ENSCGRG00001017387	Upf3a	99	70.824	ENSCATG00000029733	UPF3A	91	71.294	Cercocebus_atys
ENSCGRG00001017387	Upf3a	99	69.626	ENSCSAG00000017388	UPF3A	91	70.093	Chlorocebus_sabaeus
ENSCGRG00001017387	Upf3a	100	99.526	ENSCGRG00000001468	Upf3a	100	99.526	Cricetulus_griseus_crigri
ENSCGRG00001017387	Upf3a	54	63.445	ENSCSEG00000002046	upf3b	52	62.800	Cynoglossus_semilaevis
ENSCGRG00001017387	Upf3a	87	58.177	ENSCSEG00000005106	upf3a	80	59.677	Cynoglossus_semilaevis
ENSCGRG00001017387	Upf3a	87	57.373	ENSCVAG00000022333	upf3a	80	59.517	Cyprinodon_variegatus
ENSCGRG00001017387	Upf3a	88	54.617	ENSDARG00000069297	upf3a	83	56.728	Danio_rerio
ENSCGRG00001017387	Upf3a	92	68.204	ENSDNOG00000034391	UPF3A	98	67.981	Dasypus_novemcinctus
ENSCGRG00001017387	Upf3a	96	59.059	ENSETEG00000010110	UPF3A	91	59.589	Echinops_telfairi
ENSCGRG00001017387	Upf3a	99	70.737	ENSEASG00005021884	UPF3A	89	70.737	Equus_asinus_asinus
ENSCGRG00001017387	Upf3a	95	70.120	ENSECAG00000017141	UPF3A	89	70.276	Equus_caballus
ENSCGRG00001017387	Upf3a	88	57.641	ENSELUG00000011050	upf3a	78	59.786	Esox_lucius
ENSCGRG00001017387	Upf3a	95	69.471	ENSFCAG00000014602	UPF3A	91	69.655	Felis_catus
ENSCGRG00001017387	Upf3a	56	59.036	ENSGMOG00000001621	upf3b	52	59.036	Gadus_morhua
ENSCGRG00001017387	Upf3a	74	60.542	ENSGMOG00000019615	upf3a	99	61.012	Gadus_morhua
ENSCGRG00001017387	Upf3a	74	62.222	ENSGACG00000001972	upf3a	99	61.801	Gasterosteus_aculeatus
ENSCGRG00001017387	Upf3a	55	60.163	ENSGACG00000017435	upf3b	61	61.765	Gasterosteus_aculeatus
ENSCGRG00001017387	Upf3a	93	56.313	ENSGGOG00000043074	-	83	55.388	Gorilla_gorilla
ENSCGRG00001017387	Upf3a	89	58.549	ENSGGOG00000041219	-	81	59.726	Gorilla_gorilla
ENSCGRG00001017387	Upf3a	99	70.353	ENSGGOG00000015428	UPF3A	91	70.824	Gorilla_gorilla
ENSCGRG00001017387	Upf3a	89	57.632	ENSHBUG00000011325	upf3a	81	59.211	Haplochromis_burtoni
ENSCGRG00001017387	Upf3a	90	72.105	ENSHGLG00000001544	UPF3A	90	72.105	Heterocephalus_glaber_female
ENSCGRG00001017387	Upf3a	90	72.105	ENSHGLG00100013244	UPF3A	90	72.105	Heterocephalus_glaber_male
ENSCGRG00001017387	Upf3a	56	61.538	ENSIPUG00000019249	upf3b	91	46.914	Ictalurus_punctatus
ENSCGRG00001017387	Upf3a	88	59.574	ENSIPUG00000023450	upf3a	83	58.901	Ictalurus_punctatus
ENSCGRG00001017387	Upf3a	53	76.991	ENSSTOG00000030282	-	88	81.905	Ictidomys_tridecemlineatus
ENSCGRG00001017387	Upf3a	87	58.445	ENSKMAG00000004381	upf3a	80	59.249	Kryptolebias_marmoratus
ENSCGRG00001017387	Upf3a	94	52.381	ENSLBEG00000021570	upf3a	84	51.128	Labrus_bergylta
ENSCGRG00001017387	Upf3a	56	59.600	ENSLBEG00000028689	upf3b	54	59.600	Labrus_bergylta
ENSCGRG00001017387	Upf3a	86	58.311	ENSLOCG00000002665	upf3a	81	60.686	Lepisosteus_oculatus
ENSCGRG00001017387	Upf3a	80	57.297	ENSLAFG00000023358	UPF3A	86	58.011	Loxodonta_africana
ENSCGRG00001017387	Upf3a	99	67.059	ENSMFAG00000045016	UPF3A	91	67.059	Macaca_fascicularis
ENSCGRG00001017387	Upf3a	99	67.925	ENSMMUG00000007449	UPF3A	91	68.396	Macaca_mulatta
ENSCGRG00001017387	Upf3a	99	64.773	ENSMNEG00000036402	UPF3A	91	64.773	Macaca_nemestrina
ENSCGRG00001017387	Upf3a	84	71.709	ENSMLEG00000014726	UPF3A	84	71.709	Mandrillus_leucophaeus
ENSCGRG00001017387	Upf3a	87	58.713	ENSMAMG00000018364	upf3a	77	60.322	Mastacembelus_armatus
ENSCGRG00001017387	Upf3a	89	57.743	ENSMZEG00005021571	upf3a	79	59.318	Maylandia_zebra
ENSCGRG00001017387	Upf3a	80	64.470	ENSMGAG00000014837	UPF3A	87	64.470	Meleagris_gallopavo
ENSCGRG00001017387	Upf3a	77	90.462	ENSMOCG00000000550	Upf3a	92	90.462	Microtus_ochrogaster
ENSCGRG00001017387	Upf3a	84	67.209	ENSMODG00000003159	UPF3A	86	67.655	Monodelphis_domestica
ENSCGRG00001017387	Upf3a	99	82.227	MGP_CAROLIEiJ_G0030848	Upf3a	99	82.227	Mus_caroli
ENSCGRG00001017387	Upf3a	99	83.412	ENSMUSG00000038398	Upf3a	99	83.412	Mus_musculus
ENSCGRG00001017387	Upf3a	99	82.701	MGP_PahariEiJ_G0021311	Upf3a	99	82.701	Mus_pahari
ENSCGRG00001017387	Upf3a	99	83.175	MGP_SPRETEiJ_G0031958	Upf3a	99	83.175	Mus_spretus
ENSCGRG00001017387	Upf3a	99	70.766	ENSMPUG00000009139	UPF3A	90	70.766	Mustela_putorius_furo
ENSCGRG00001017387	Upf3a	84	70.889	ENSMLUG00000015905	UPF3A	88	70.889	Myotis_lucifugus
ENSCGRG00001017387	Upf3a	100	83.924	ENSNGAG00000019314	Upf3a	100	83.924	Nannospalax_galili
ENSCGRG00001017387	Upf3a	89	57.632	ENSNBRG00000000828	upf3a	81	59.211	Neolamprologus_brichardi
ENSCGRG00001017387	Upf3a	99	70.188	ENSNLEG00000007563	UPF3A	91	70.657	Nomascus_leucogenys
ENSCGRG00001017387	Upf3a	55	65.812	ENSOPRG00000008846	-	56	67.521	Ochotona_princeps
ENSCGRG00001017387	Upf3a	51	76.037	ENSODEG00000009176	-	86	76.037	Octodon_degus
ENSCGRG00001017387	Upf3a	89	56.818	ENSONIG00000006817	upf3a	82	58.486	Oreochromis_niloticus
ENSCGRG00001017387	Upf3a	84	57.065	ENSOANG00000006985	-	96	57.065	Ornithorhynchus_anatinus
ENSCGRG00001017387	Upf3a	88	61.198	ENSOCUG00000008450	UPF3A	79	61.979	Oryctolagus_cuniculus
ENSCGRG00001017387	Upf3a	87	59.249	ENSORLG00000010911	upf3a	79	59.249	Oryzias_latipes
ENSCGRG00001017387	Upf3a	67	53.559	ENSORLG00000001026	upf3b	84	45.939	Oryzias_latipes
ENSCGRG00001017387	Upf3a	67	53.898	ENSORLG00020003758	upf3b	84	46.193	Oryzias_latipes_hni
ENSCGRG00001017387	Upf3a	86	56.369	ENSORLG00020014317	upf3a	79	57.412	Oryzias_latipes_hni
ENSCGRG00001017387	Upf3a	67	46.735	ENSORLG00015012954	upf3b	84	46.447	Oryzias_latipes_hsok
ENSCGRG00001017387	Upf3a	87	56.836	ENSOMEG00000014425	upf3a	82	57.895	Oryzias_melastigma
ENSCGRG00001017387	Upf3a	89	72.123	ENSOGAG00000004788	UPF3A	94	72.123	Otolemur_garnettii
ENSCGRG00001017387	Upf3a	90	67.595	ENSOARG00000009004	UPF3A	83	67.595	Ovis_aries
ENSCGRG00001017387	Upf3a	99	69.746	ENSPPAG00000042267	UPF3A	91	70.208	Pan_paniscus
ENSCGRG00001017387	Upf3a	95	69.471	ENSPPRG00000025062	UPF3A	91	69.655	Panthera_pardus
ENSCGRG00001017387	Upf3a	99	70.046	ENSPTRG00000006073	UPF3A	91	70.507	Pan_troglodytes
ENSCGRG00001017387	Upf3a	84	57.967	ENSPTRG00000041187	-	81	58.082	Pan_troglodytes
ENSCGRG00001017387	Upf3a	84	57.465	ENSPTRG00000041835	-	81	57.746	Pan_troglodytes
ENSCGRG00001017387	Upf3a	89	56.364	ENSPTRG00000051640	-	86	56.364	Pan_troglodytes
ENSCGRG00001017387	Upf3a	99	71.059	ENSPANG00000004346	UPF3A	91	71.059	Papio_anubis
ENSCGRG00001017387	Upf3a	90	54.847	ENSPKIG00000004422	upf3a	81	58.266	Paramormyrops_kingsleyae
ENSCGRG00001017387	Upf3a	59	60.227	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
ENSCGRG00001017387	Upf3a	84	65.395	ENSPSIG00000007468	UPF3A	89	65.395	Pelodiscus_sinensis
ENSCGRG00001017387	Upf3a	89	55.443	ENSPMGG00000012696	upf3a	80	56.171	Periophthalmus_magnuspinnatus
ENSCGRG00001017387	Upf3a	100	90.307	ENSPEMG00000019968	-	100	90.307	Peromyscus_maniculatus_bairdii
ENSCGRG00001017387	Upf3a	78	71.849	ENSPCIG00000019590	-	90	71.831	Phascolarctos_cinereus
ENSCGRG00001017387	Upf3a	87	57.838	ENSPFOG00000013222	upf3a	80	59.140	Poecilia_formosa
ENSCGRG00001017387	Upf3a	87	48.370	ENSPLAG00000011960	upf3a	81	58.177	Poecilia_latipinna
ENSCGRG00001017387	Upf3a	87	57.796	ENSPMEG00000000836	upf3a	76	59.409	Poecilia_mexicana
ENSCGRG00001017387	Upf3a	99	69.585	ENSPPYG00000005536	UPF3A	91	70.046	Pongo_abelii
ENSCGRG00001017387	Upf3a	74	65.312	ENSPCAG00000013124	UPF3A	66	66.250	Procavia_capensis
ENSCGRG00001017387	Upf3a	99	65.668	ENSPVAG00000005656	UPF3A	91	65.668	Pteropus_vampyrus
ENSCGRG00001017387	Upf3a	89	57.743	ENSPNYG00000011289	upf3a	79	59.318	Pundamilia_nyererei
ENSCGRG00001017387	Upf3a	88	56.267	ENSPNAG00000019532	upf3a	82	58.400	Pygocentrus_nattereri
ENSCGRG00001017387	Upf3a	54	62.917	ENSPNAG00000021528	upf3b	56	63.690	Pygocentrus_nattereri
ENSCGRG00001017387	Upf3a	94	85.354	ENSRNOG00000017397	Upf3a	97	85.354	Rattus_norvegicus
ENSCGRG00001017387	Upf3a	86	71.196	ENSRBIG00000034007	UPF3A	87	70.052	Rhinopithecus_bieti
ENSCGRG00001017387	Upf3a	84	71.910	ENSRROG00000012212	UPF3A	76	71.910	Rhinopithecus_roxellana
ENSCGRG00001017387	Upf3a	99	59.908	ENSSBOG00000029989	UPF3A	90	60.369	Saimiri_boliviensis_boliviensis
ENSCGRG00001017387	Upf3a	86	66.313	ENSSHAG00000009895	UPF3A	90	66.313	Sarcophilus_harrisii
ENSCGRG00001017387	Upf3a	57	63.386	ENSSFOG00015005614	upf3b	56	62.891	Scleropages_formosus
ENSCGRG00001017387	Upf3a	87	58.400	ENSSFOG00015021851	upf3a	80	58.400	Scleropages_formosus
ENSCGRG00001017387	Upf3a	57	62.151	ENSSMAG00000012913	upf3b	54	64.706	Scophthalmus_maximus
ENSCGRG00001017387	Upf3a	94	54.808	ENSSMAG00000003858	upf3a	79	71.795	Scophthalmus_maximus
ENSCGRG00001017387	Upf3a	86	50.000	ENSSDUG00000009680	upf3a	77	60.270	Seriola_dumerili
ENSCGRG00001017387	Upf3a	84	58.630	ENSSARG00000007262	UPF3A	89	55.890	Sorex_araneus
ENSCGRG00001017387	Upf3a	53	64.681	ENSSPAG00000009989	upf3b	54	62.800	Stegastes_partitus
ENSCGRG00001017387	Upf3a	99	66.133	ENSSSCG00000024679	UPF3A	87	66.590	Sus_scrofa
ENSCGRG00001017387	Upf3a	87	65.963	ENSTGUG00000009493	UPF3A	96	65.963	Taeniopygia_guttata
ENSCGRG00001017387	Upf3a	89	53.947	ENSTRUG00000012730	upf3a	82	55.497	Takifugu_rubripes
ENSCGRG00001017387	Upf3a	87	49.189	ENSTNIG00000014973	upf3a	95	48.429	Tetraodon_nigroviridis
ENSCGRG00001017387	Upf3a	68	62.876	ENSTBEG00000017186	-	95	62.876	Tupaia_belangeri
ENSCGRG00001017387	Upf3a	99	58.716	ENSTTRG00000015414	UPF3A	91	58.716	Tursiops_truncatus
ENSCGRG00001017387	Upf3a	84	69.399	ENSVPAG00000003525	UPF3A	89	69.399	Vicugna_pacos
ENSCGRG00001017387	Upf3a	100	68.119	ENSVVUG00000013538	UPF3A	88	68.879	Vulpes_vulpes
ENSCGRG00001017387	Upf3a	86	54.348	ENSXETG00000002572	upf3a	87	54.348	Xenopus_tropicalis
ENSCGRG00001017387	Upf3a	82	44.565	ENSXETG00000007440	upf3b	71	67.683	Xenopus_tropicalis
ENSCGRG00001017387	Upf3a	87	58.221	ENSXMAG00000013452	upf3a	80	59.517	Xiphophorus_maculatus