EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001017413 (Gene tree)
Gene ID: -
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 45707 bases
Position: chrscaffold_9:65694876-65740582
Accession: 1917115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001017350	DND1_DSRM	PF14709.7	1.8e-25	1	1
ENSCGRP00001017350	RRM_1	PF00076.22	9.9e-40	1	3
ENSCGRP00001017350	RRM_1	PF00076.22	9.9e-40	2	3
ENSCGRP00001017350	RRM_1	PF00076.22	9.9e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001021594	-	1788	-	ENSCGRP00001017350	595 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001017413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001017413's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001017413	A1cf	51	53.571	ENSCGRG00001012007	Hnrnpr	50	52.681
ENSCGRG00001017413	A1cf	58	63.610	ENSCGRG00001020102	-	66	63.610
ENSCGRG00001017413	A1cf	87	71.711	ENSCGRG00001016714	Rbm46	97	71.475
ENSCGRG00001017413	A1cf	51	53.074	ENSCGRG00001014564	Syncrip	62	54.545
ENSCGRG00001017413	A1cf	76	55.858	ENSCGRG00001000623	-	66	67.049

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001017413	A1cf	100	94.286	ENSG00000148584	A1CF	100	98.507	Homo_sapiens
ENSCGRG00001017413	A1cf	100	72.968	ENSAPOG00000008259	a1cf	100	72.803	Acanthochromis_polyacanthus
ENSCGRG00001017413	A1cf	100	92.773	ENSAMEG00000000523	A1CF	100	92.773	Ailuropoda_melanoleuca
ENSCGRG00001017413	A1cf	100	74.715	ENSACIG00000008632	a1cf	100	75.856	Amphilophus_citrinellus
ENSCGRG00001017413	A1cf	100	73.486	ENSAOCG00000023744	a1cf	93	85.030	Amphiprion_ocellaris
ENSCGRG00001017413	A1cf	100	74.468	ENSAPEG00000009537	a1cf	100	75.123	Amphiprion_percula
ENSCGRG00001017413	A1cf	100	75.407	ENSATEG00000013720	a1cf	100	76.547	Anabas_testudineus
ENSCGRG00001017413	A1cf	100	86.913	ENSAPLG00000002964	A1CF	100	86.913	Anas_platyrhynchos
ENSCGRG00001017413	A1cf	100	83.221	ENSACAG00000015269	A1CF	100	83.221	Anolis_carolinensis
ENSCGRG00001017413	A1cf	100	93.109	ENSANAG00000019974	A1CF	100	92.941	Aotus_nancymaae
ENSCGRG00001017413	A1cf	100	72.222	ENSACLG00000017428	a1cf	100	73.856	Astatotilapia_calliptera
ENSCGRG00001017413	A1cf	100	73.719	ENSAMXG00000018180	a1cf	100	73.719	Astyanax_mexicanus
ENSCGRG00001017413	A1cf	100	92.605	ENSBTAG00000021195	A1CF	100	93.040	Bos_taurus
ENSCGRG00001017413	A1cf	100	94.790	ENSCJAG00000005045	A1CF	100	94.622	Callithrix_jacchus
ENSCGRG00001017413	A1cf	100	92.269	ENSCAFG00000015581	A1CF	100	92.773	Canis_familiaris
ENSCGRG00001017413	A1cf	100	92.269	ENSCAFG00020026421	A1CF	100	92.773	Canis_lupus_dingo
ENSCGRG00001017413	A1cf	100	93.109	ENSCHIG00000020411	A1CF	100	93.109	Capra_hircus
ENSCGRG00001017413	A1cf	95	92.730	ENSTSYG00000001755	A1CF	100	91.815	Carlito_syrichta
ENSCGRG00001017413	A1cf	100	83.544	ENSCAPG00000017386	A1CF	100	83.544	Cavia_aperea
ENSCGRG00001017413	A1cf	100	94.118	ENSCPOG00000009807	A1CF	100	93.950	Cavia_porcellus
ENSCGRG00001017413	A1cf	100	94.790	ENSCCAG00000018168	A1CF	100	94.286	Cebus_capucinus
ENSCGRG00001017413	A1cf	100	92.941	ENSCATG00000043715	A1CF	100	92.941	Cercocebus_atys
ENSCGRG00001017413	A1cf	100	93.792	ENSCLAG00000010424	A1CF	100	93.792	Chinchilla_lanigera
ENSCGRG00001017413	A1cf	100	93.950	ENSCSAG00000007032	A1CF	100	93.950	Chlorocebus_sabaeus
ENSCGRG00001017413	A1cf	98	87.797	ENSCHOG00000009089	A1CF	98	87.797	Choloepus_hoffmanni
ENSCGRG00001017413	A1cf	100	86.913	ENSCPBG00000026464	A1CF	100	86.745	Chrysemys_picta_bellii
ENSCGRG00001017413	A1cf	100	93.950	ENSCANG00000038032	A1CF	100	93.950	Colobus_angolensis_palliatus
ENSCGRG00001017413	A1cf	100	99.160	ENSCGRG00000017332	A1cf	100	99.160	Cricetulus_griseus_crigri
ENSCGRG00001017413	A1cf	100	74.627	ENSCSEG00000002361	a1cf	100	76.285	Cynoglossus_semilaevis
ENSCGRG00001017413	A1cf	100	74.104	ENSCVAG00000010520	a1cf	100	75.570	Cyprinodon_variegatus
ENSCGRG00001017413	A1cf	100	77.537	ENSDARG00000002968	a1cf	100	78.536	Danio_rerio
ENSCGRG00001017413	A1cf	100	93.109	ENSDNOG00000002829	A1CF	100	93.109	Dasypus_novemcinctus
ENSCGRG00001017413	A1cf	81	92.391	ENSETEG00000012527	A1CF	81	92.391	Echinops_telfairi
ENSCGRG00001017413	A1cf	100	94.807	ENSEASG00005012924	A1CF	100	94.975	Equus_asinus_asinus
ENSCGRG00001017413	A1cf	100	94.640	ENSECAG00000010424	A1CF	100	94.807	Equus_caballus
ENSCGRG00001017413	A1cf	78	79.657	ENSEEUG00000000013	A1CF	97	80.889	Erinaceus_europaeus
ENSCGRG00001017413	A1cf	100	78.702	ENSELUG00000003159	a1cf	100	79.368	Esox_lucius
ENSCGRG00001017413	A1cf	100	90.084	ENSFCAG00000011179	A1CF	100	90.252	Felis_catus
ENSCGRG00001017413	A1cf	100	84.899	ENSFALG00000013183	A1CF	100	84.899	Ficedula_albicollis
ENSCGRG00001017413	A1cf	100	91.765	ENSFDAG00000019371	A1CF	100	91.765	Fukomys_damarensis
ENSCGRG00001017413	A1cf	100	69.381	ENSFHEG00000019652	a1cf	96	82.812	Fundulus_heteroclitus
ENSCGRG00001017413	A1cf	100	72.112	ENSGMOG00000018943	a1cf	100	71.617	Gadus_morhua
ENSCGRG00001017413	A1cf	95	86.018	ENSGALG00000003765	A1CF	97	86.018	Gallus_gallus
ENSCGRG00001017413	A1cf	100	69.572	ENSGAFG00000014868	a1cf	100	70.559	Gambusia_affinis
ENSCGRG00001017413	A1cf	100	73.520	ENSGACG00000010241	a1cf	100	74.013	Gasterosteus_aculeatus
ENSCGRG00001017413	A1cf	94	86.856	ENSGAGG00000016508	A1CF	97	86.679	Gopherus_agassizii
ENSCGRG00001017413	A1cf	100	94.454	ENSGGOG00000009670	A1CF	100	94.286	Gorilla_gorilla
ENSCGRG00001017413	A1cf	100	73.573	ENSHBUG00000021959	a1cf	100	75.367	Haplochromis_burtoni
ENSCGRG00001017413	A1cf	100	93.613	ENSHGLG00000008955	A1CF	100	93.613	Heterocephalus_glaber_female
ENSCGRG00001017413	A1cf	100	92.941	ENSHGLG00100000518	A1CF	100	92.941	Heterocephalus_glaber_male
ENSCGRG00001017413	A1cf	100	69.870	ENSHCOG00000017669	a1cf	100	72.195	Hippocampus_comes
ENSCGRG00001017413	A1cf	89	82.682	ENSIPUG00000010367	a1cf	95	82.927	Ictalurus_punctatus
ENSCGRG00001017413	A1cf	100	76.260	ENSKMAG00000006568	a1cf	100	77.073	Kryptolebias_marmoratus
ENSCGRG00001017413	A1cf	99	74.384	ENSLBEG00000020994	a1cf	98	75.534	Labrus_bergylta
ENSCGRG00001017413	A1cf	100	81.135	ENSLACG00000008061	A1CF	100	80.634	Latimeria_chalumnae
ENSCGRG00001017413	A1cf	100	81.167	ENSLOCG00000006302	a1cf	100	81.167	Lepisosteus_oculatus
ENSCGRG00001017413	A1cf	100	93.445	ENSLAFG00000015462	A1CF	100	93.445	Loxodonta_africana
ENSCGRG00001017413	A1cf	100	92.941	ENSMFAG00000035948	A1CF	100	92.941	Macaca_fascicularis
ENSCGRG00001017413	A1cf	100	92.941	ENSMMUG00000007077	A1CF	100	92.941	Macaca_mulatta
ENSCGRG00001017413	A1cf	100	92.773	ENSMNEG00000031454	A1CF	100	92.773	Macaca_nemestrina
ENSCGRG00001017413	A1cf	100	94.286	ENSMLEG00000037223	A1CF	100	94.286	Mandrillus_leucophaeus
ENSCGRG00001017413	A1cf	100	72.013	ENSMAMG00000010402	a1cf	100	74.346	Mastacembelus_armatus
ENSCGRG00001017413	A1cf	100	75.333	ENSMZEG00005013245	a1cf	100	76.167	Maylandia_zebra
ENSCGRG00001017413	A1cf	100	86.265	ENSMGAG00000001507	A1CF	100	86.265	Meleagris_gallopavo
ENSCGRG00001017413	A1cf	100	98.151	ENSMAUG00000007422	A1cf	100	98.151	Mesocricetus_auratus
ENSCGRG00001017413	A1cf	100	91.639	ENSMICG00000003377	A1CF	100	91.806	Microcebus_murinus
ENSCGRG00001017413	A1cf	100	96.807	ENSMOCG00000021536	A1cf	100	96.807	Microtus_ochrogaster
ENSCGRG00001017413	A1cf	100	66.450	ENSMMOG00000009422	a1cf	100	67.430	Mola_mola
ENSCGRG00001017413	A1cf	92	88.665	ENSMODG00000016478	A1CF	97	90.170	Monodelphis_domestica
ENSCGRG00001017413	A1cf	100	72.333	ENSMALG00000012992	a1cf	100	72.000	Monopterus_albus
ENSCGRG00001017413	A1cf	100	95.966	MGP_CAROLIEiJ_G0022873	A1cf	100	95.966	Mus_caroli
ENSCGRG00001017413	A1cf	100	95.966	ENSMUSG00000052595	A1cf	99	97.105	Mus_musculus
ENSCGRG00001017413	A1cf	100	95.126	MGP_PahariEiJ_G0014366	A1cf	100	95.126	Mus_pahari
ENSCGRG00001017413	A1cf	100	95.630	MGP_SPRETEiJ_G0023792	A1cf	100	95.630	Mus_spretus
ENSCGRG00001017413	A1cf	100	87.059	ENSMPUG00000016971	A1CF	100	87.059	Mustela_putorius_furo
ENSCGRG00001017413	A1cf	100	93.277	ENSMLUG00000016071	A1CF	100	93.277	Myotis_lucifugus
ENSCGRG00001017413	A1cf	100	95.630	ENSNGAG00000015136	A1cf	100	95.630	Nannospalax_galili
ENSCGRG00001017413	A1cf	100	73.899	ENSNBRG00000001712	a1cf	100	75.693	Neolamprologus_brichardi
ENSCGRG00001017413	A1cf	100	94.958	ENSNLEG00000012028	A1CF	100	94.958	Nomascus_leucogenys
ENSCGRG00001017413	A1cf	94	86.679	ENSMEUG00000015909	A1CF	100	86.679	Notamacropus_eugenii
ENSCGRG00001017413	A1cf	88	84.000	ENSOPRG00000010667	A1CF	97	83.902	Ochotona_princeps
ENSCGRG00001017413	A1cf	100	74.225	ENSONIG00000019105	a1cf	100	75.204	Oreochromis_niloticus
ENSCGRG00001017413	A1cf	78	87.580	ENSOANG00000007360	A1CF	99	87.580	Ornithorhynchus_anatinus
ENSCGRG00001017413	A1cf	100	92.282	ENSOCUG00000011587	A1CF	100	92.450	Oryctolagus_cuniculus
ENSCGRG00001017413	A1cf	100	73.203	ENSORLG00000013342	a1cf	100	72.816	Oryzias_latipes
ENSCGRG00001017413	A1cf	100	74.225	ENSORLG00020000586	a1cf	100	74.225	Oryzias_latipes_hni
ENSCGRG00001017413	A1cf	100	74.062	ENSORLG00015018569	a1cf	100	74.062	Oryzias_latipes_hsok
ENSCGRG00001017413	A1cf	100	72.995	ENSOMEG00000013531	a1cf	100	72.831	Oryzias_melastigma
ENSCGRG00001017413	A1cf	100	92.437	ENSOGAG00000012884	A1CF	100	92.605	Otolemur_garnettii
ENSCGRG00001017413	A1cf	100	93.445	ENSOARG00000013695	A1CF	100	93.445	Ovis_aries
ENSCGRG00001017413	A1cf	97	92.374	ENSPPAG00000028115	A1CF	100	96.356	Pan_paniscus
ENSCGRG00001017413	A1cf	100	91.765	ENSPPRG00000012180	A1CF	100	91.933	Panthera_pardus
ENSCGRG00001017413	A1cf	100	91.765	ENSPTIG00000021223	A1CF	100	91.933	Panthera_tigris_altaica
ENSCGRG00001017413	A1cf	100	94.286	ENSPTRG00000002508	A1CF	100	94.118	Pan_troglodytes
ENSCGRG00001017413	A1cf	100	92.941	ENSPANG00000021988	A1CF	100	92.941	Papio_anubis
ENSCGRG00001017413	A1cf	100	79.534	ENSPKIG00000025176	a1cf	100	79.534	Paramormyrops_kingsleyae
ENSCGRG00001017413	A1cf	100	85.570	ENSPSIG00000010318	A1CF	100	85.403	Pelodiscus_sinensis
ENSCGRG00001017413	A1cf	88	70.857	ENSPMGG00000013359	a1cf	99	66.893	Periophthalmus_magnuspinnatus
ENSCGRG00001017413	A1cf	100	96.975	ENSPEMG00000015021	A1cf	100	96.975	Peromyscus_maniculatus_bairdii
ENSCGRG00001017413	A1cf	100	86.913	ENSPCIG00000002175	A1CF	100	86.913	Phascolarctos_cinereus
ENSCGRG00001017413	A1cf	100	75.407	ENSPFOG00000007437	-	100	76.710	Poecilia_formosa
ENSCGRG00001017413	A1cf	100	75.570	ENSPFOG00000006683	a1cf	100	76.873	Poecilia_formosa
ENSCGRG00001017413	A1cf	100	74.267	ENSPLAG00000001210	-	100	75.570	Poecilia_latipinna
ENSCGRG00001017413	A1cf	100	74.267	ENSPLAG00000000026	a1cf	100	75.570	Poecilia_latipinna
ENSCGRG00001017413	A1cf	100	67.974	ENSPMEG00000015529	-	100	69.281	Poecilia_mexicana
ENSCGRG00001017413	A1cf	100	66.830	ENSPMEG00000000921	a1cf	100	68.137	Poecilia_mexicana
ENSCGRG00001017413	A1cf	100	75.570	ENSPREG00000016298	a1cf	100	76.710	Poecilia_reticulata
ENSCGRG00001017413	A1cf	100	93.445	ENSPPYG00000002819	A1CF	100	93.445	Pongo_abelii
ENSCGRG00001017413	A1cf	79	71.036	ENSPCAG00000006463	A1CF	70	87.755	Procavia_capensis
ENSCGRG00001017413	A1cf	100	93.792	ENSPCOG00000024172	A1CF	100	93.792	Propithecus_coquereli
ENSCGRG00001017413	A1cf	100	74.878	ENSPNYG00000017944	a1cf	100	76.672	Pundamilia_nyererei
ENSCGRG00001017413	A1cf	100	78.974	ENSPNAG00000007704	a1cf	100	78.808	Pygocentrus_nattereri
ENSCGRG00001017413	A1cf	100	94.958	ENSRNOG00000033195	A1cf	100	94.958	Rattus_norvegicus
ENSCGRG00001017413	A1cf	100	87.605	ENSRBIG00000042892	A1CF	100	90.607	Rhinopithecus_bieti
ENSCGRG00001017413	A1cf	100	94.286	ENSRROG00000041398	A1CF	100	94.286	Rhinopithecus_roxellana
ENSCGRG00001017413	A1cf	100	94.790	ENSSBOG00000021930	A1CF	100	94.790	Saimiri_boliviensis_boliviensis
ENSCGRG00001017413	A1cf	100	87.919	ENSSHAG00000005096	A1CF	100	87.919	Sarcophilus_harrisii
ENSCGRG00001017413	A1cf	100	77.778	ENSSFOG00015011774	a1cf	100	78.109	Scleropages_formosus
ENSCGRG00001017413	A1cf	100	74.430	ENSSMAG00000013271	a1cf	100	74.919	Scophthalmus_maximus
ENSCGRG00001017413	A1cf	100	75.954	ENSSDUG00000013930	a1cf	100	76.451	Seriola_dumerili
ENSCGRG00001017413	A1cf	100	68.977	ENSSLDG00000004290	a1cf	100	69.967	Seriola_lalandi_dorsalis
ENSCGRG00001017413	A1cf	95	81.802	ENSSARG00000005940	A1CF	96	81.802	Sorex_araneus
ENSCGRG00001017413	A1cf	95	86.292	ENSSPUG00000006797	A1CF	95	86.292	Sphenodon_punctatus
ENSCGRG00001017413	A1cf	100	94.118	ENSSSCG00000010431	A1CF	100	94.118	Sus_scrofa
ENSCGRG00001017413	A1cf	100	86.455	ENSTGUG00000005090	A1CF	100	86.455	Taeniopygia_guttata
ENSCGRG00001017413	A1cf	100	73.899	ENSTRUG00000001982	a1cf	100	74.062	Takifugu_rubripes
ENSCGRG00001017413	A1cf	100	74.146	ENSTNIG00000003580	a1cf	100	73.984	Tetraodon_nigroviridis
ENSCGRG00001017413	A1cf	97	85.095	ENSTTRG00000013190	A1CF	95	85.095	Tursiops_truncatus
ENSCGRG00001017413	A1cf	100	91.597	ENSUAMG00000020065	A1CF	100	91.429	Ursus_americanus
ENSCGRG00001017413	A1cf	100	92.605	ENSUMAG00000011162	A1CF	100	92.605	Ursus_maritimus
ENSCGRG00001017413	A1cf	87	87.332	ENSVPAG00000006130	A1CF	86	87.332	Vicugna_pacos
ENSCGRG00001017413	A1cf	100	91.597	ENSVVUG00000002504	A1CF	100	91.597	Vulpes_vulpes
ENSCGRG00001017413	A1cf	100	77.833	ENSXETG00000006611	a1cf	100	77.833	Xenopus_tropicalis
ENSCGRG00001017413	A1cf	100	75.738	ENSXCOG00000003302	a1cf	100	76.557	Xiphophorus_couchianus
ENSCGRG00001017413	A1cf	100	76.885	ENSXMAG00000016703	a1cf	100	77.705	Xiphophorus_maculatus