EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001017959 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 10593 bases
Position: chrscaffold_0:82364580-82375172
Accession: 100756440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001018117	SMN	PF06003.12	3.2e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001022363	-	120	-	ENSCGRP00001018119	39 (aa)	-	-
ENSCGRT00001022361	-	864	-	ENSCGRP00001018117	287 (aa)	XP_003503728	UPI00022F4C34

Gene Model

Click here to download ENSCGRG00001017959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001017959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001017959	-	100	77.003	ENSCGRG00001016998	-	100	77.700

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001017959	-	97	83.986	ENSG00000172062	SMN1	95	88.000	Homo_sapiens
ENSCGRG00001017959	-	97	83.986	ENSG00000205571	SMN2	95	88.000	Homo_sapiens
ENSCGRG00001017959	-	93	51.111	ENSAPOG00000011324	smn1	94	52.727	Acanthochromis_polyacanthus
ENSCGRG00001017959	-	97	85.461	ENSAMEG00000003316	-	96	85.172	Ailuropoda_melanoleuca
ENSCGRG00001017959	-	53	57.143	ENSACIG00000007598	smn1	89	57.143	Amphilophus_citrinellus
ENSCGRG00001017959	-	89	51.163	ENSACIG00000019772	-	97	51.163	Amphilophus_citrinellus
ENSCGRG00001017959	-	93	51.481	ENSAOCG00000024444	smn1	94	52.727	Amphiprion_ocellaris
ENSCGRG00001017959	-	93	51.852	ENSAPEG00000016504	smn1	94	53.091	Amphiprion_percula
ENSCGRG00001017959	-	90	53.731	ENSATEG00000002182	smn1	79	54.198	Anabas_testudineus
ENSCGRG00001017959	-	68	53.807	ENSAPLG00000010912	-	97	52.792	Anas_platyrhynchos
ENSCGRG00001017959	-	99	54.237	ENSACAG00000010017	-	95	55.396	Anolis_carolinensis
ENSCGRG00001017959	-	99	81.293	ENSANAG00000032133	-	99	81.293	Aotus_nancymaae
ENSCGRG00001017959	-	93	47.653	ENSACLG00000007308	smn1	88	53.101	Astatotilapia_calliptera
ENSCGRG00001017959	-	93	50.000	ENSAMXG00000013884	smn1	95	51.825	Astyanax_mexicanus
ENSCGRG00001017959	-	97	80.357	ENSBTAG00000005743	SMN2	99	79.094	Bos_taurus
ENSCGRG00001017959	-	97	81.560	ENSCJAG00000016290	-	99	80.887	Callithrix_jacchus
ENSCGRG00001017959	-	100	85.172	ENSCAFG00000007812	SMN	100	85.172	Canis_familiaris
ENSCGRG00001017959	-	99	85.417	ENSCAFG00020019229	-	93	85.417	Canis_lupus_dingo
ENSCGRG00001017959	-	97	81.206	ENSCHIG00000015559	-	100	79.125	Capra_hircus
ENSCGRG00001017959	-	99	85.121	ENSTSYG00000012058	-	100	84.828	Carlito_syrichta
ENSCGRG00001017959	-	76	66.079	ENSCAPG00000011021	-	100	65.351	Cavia_aperea
ENSCGRG00001017959	-	99	78.157	ENSCPOG00000012328	-	99	77.474	Cavia_porcellus
ENSCGRG00001017959	-	100	78.231	ENSCPOG00000036973	-	100	77.551	Cavia_porcellus
ENSCGRG00001017959	-	97	82.857	ENSCCAG00000018127	-	99	82.131	Cebus_capucinus
ENSCGRG00001017959	-	97	83.986	ENSCATG00000037002	-	99	83.453	Cercocebus_atys
ENSCGRG00001017959	-	100	75.839	ENSCLAG00000000284	-	100	75.839	Chinchilla_lanigera
ENSCGRG00001017959	-	97	83.986	ENSCSAG00000015688	-	99	83.219	Chlorocebus_sabaeus
ENSCGRG00001017959	-	86	72.222	ENSCHOG00000007346	-	67	80.357	Choloepus_hoffmanni
ENSCGRG00001017959	-	98	57.586	ENSCPBG00000010968	-	99	56.667	Chrysemys_picta_bellii
ENSCGRG00001017959	-	95	78.214	ENSCANG00000033324	-	95	78.214	Colobus_angolensis_palliatus
ENSCGRG00001017959	-	97	83.571	ENSCANG00000038242	-	99	85.714	Colobus_angolensis_palliatus
ENSCGRG00001017959	-	100	100.000	ENSCGRG00000007698	Smn1	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001017959	-	93	50.000	ENSCSEG00000015227	smn1	97	49.822	Cynoglossus_semilaevis
ENSCGRG00001017959	-	93	53.405	ENSCVAG00000007498	smn1	95	53.237	Cyprinodon_variegatus
ENSCGRG00001017959	-	94	50.709	ENSDARG00000018494	smn1	96	51.799	Danio_rerio
ENSCGRG00001017959	-	83	80.165	ENSDNOG00000007283	-	100	80.165	Dasypus_novemcinctus
ENSCGRG00001017959	-	78	69.027	ENSDNOG00000045949	-	90	68.720	Dasypus_novemcinctus
ENSCGRG00001017959	-	100	76.109	ENSDORG00000007082	Smn1	99	76.109	Dipodomys_ordii
ENSCGRG00001017959	-	71	69.903	ENSETEG00000001406	-	93	68.586	Echinops_telfairi
ENSCGRG00001017959	-	94	37.333	ENSEBUG00000011902	smn1	96	39.437	Eptatretus_burgeri
ENSCGRG00001017959	-	90	77.947	ENSEASG00005018000	-	89	79.528	Equus_asinus_asinus
ENSCGRG00001017959	-	100	83.162	ENSECAG00000015215	-	100	83.162	Equus_caballus
ENSCGRG00001017959	-	86	78.088	ENSEEUG00000015777	-	100	78.088	Erinaceus_europaeus
ENSCGRG00001017959	-	92	54.745	ENSELUG00000018067	smn1	94	53.114	Esox_lucius
ENSCGRG00001017959	-	100	82.759	ENSFCAG00000028292	SMN	100	82.759	Felis_catus
ENSCGRG00001017959	-	90	60.305	ENSFALG00000012320	-	91	59.387	Ficedula_albicollis
ENSCGRG00001017959	-	100	77.181	ENSFDAG00000017683	-	100	77.181	Fukomys_damarensis
ENSCGRG00001017959	-	61	54.494	ENSFHEG00000018508	smn1	96	51.636	Fundulus_heteroclitus
ENSCGRG00001017959	-	96	46.763	ENSGMOG00000017279	smn1	96	45.290	Gadus_morhua
ENSCGRG00001017959	-	93	59.108	ENSGALG00000002430	SMN	95	57.993	Gallus_gallus
ENSCGRG00001017959	-	93	52.174	ENSGAFG00000009501	smn1	94	53.333	Gambusia_affinis
ENSCGRG00001017959	-	93	50.735	ENSGACG00000010584	smn1	91	53.137	Gasterosteus_aculeatus
ENSCGRG00001017959	-	95	36.765	ENSGAGG00000013639	-	56	48.485	Gopherus_agassizii
ENSCGRG00001017959	-	98	58.419	ENSGAGG00000011374	-	99	57.045	Gopherus_agassizii
ENSCGRG00001017959	-	63	82.514	ENSGGOG00000026704	-	91	81.443	Gorilla_gorilla
ENSCGRG00001017959	-	95	72.101	ENSGGOG00000003872	-	100	72.202	Gorilla_gorilla
ENSCGRG00001017959	-	92	50.562	ENSHBUG00000013987	smn1	94	53.759	Haplochromis_burtoni
ENSCGRG00001017959	-	100	75.768	ENSHGLG00000001905	-	100	75.768	Heterocephalus_glaber_female
ENSCGRG00001017959	-	99	79.655	ENSHGLG00000001018	-	98	79.655	Heterocephalus_glaber_female
ENSCGRG00001017959	-	96	76.157	ENSHGLG00100018676	-	100	76.157	Heterocephalus_glaber_male
ENSCGRG00001017959	-	99	79.655	ENSHGLG00100011252	-	98	79.655	Heterocephalus_glaber_male
ENSCGRG00001017959	-	90	50.000	ENSHCOG00000017136	smn1	87	50.385	Hippocampus_comes
ENSCGRG00001017959	-	92	52.030	ENSIPUG00000012580	smn1	86	50.357	Ictalurus_punctatus
ENSCGRG00001017959	-	91	87.452	ENSSTOG00000012288	-	100	85.870	Ictidomys_tridecemlineatus
ENSCGRG00001017959	-	60	63.006	ENSJJAG00000014853	-	89	63.218	Jaculus_jaculus
ENSCGRG00001017959	-	93	52.747	ENSKMAG00000007239	smn1	96	52.107	Kryptolebias_marmoratus
ENSCGRG00001017959	-	93	52.768	ENSLBEG00000022550	smn1	94	54.444	Labrus_bergylta
ENSCGRG00001017959	-	93	36.331	ENSLACG00000009808	-	94	36.806	Latimeria_chalumnae
ENSCGRG00001017959	-	92	53.933	ENSLOCG00000011339	smn1	94	52.206	Lepisosteus_oculatus
ENSCGRG00001017959	-	100	80.952	ENSLAFG00000003425	-	96	80.952	Loxodonta_africana
ENSCGRG00001017959	-	97	79.359	ENSMFAG00000008812	-	99	78.767	Macaca_fascicularis
ENSCGRG00001017959	-	97	84.698	ENSMFAG00000031523	SMN1	99	85.714	Macaca_fascicularis
ENSCGRG00001017959	-	97	84.698	ENSMMUG00000020214	SMN1	99	85.714	Macaca_mulatta
ENSCGRG00001017959	-	97	78.648	ENSMMUG00000030594	-	99	78.082	Macaca_mulatta
ENSCGRG00001017959	-	76	69.683	ENSMNEG00000036423	-	86	69.683	Macaca_nemestrina
ENSCGRG00001017959	-	97	84.342	ENSMNEG00000035094	-	99	85.714	Macaca_nemestrina
ENSCGRG00001017959	-	96	83.813	ENSMLEG00000041902	-	99	84.615	Mandrillus_leucophaeus
ENSCGRG00001017959	-	92	52.015	ENSMAMG00000011034	smn1	94	52.963	Mastacembelus_armatus
ENSCGRG00001017959	-	92	49.638	ENSMZEG00005013634	smn1	94	53.383	Maylandia_zebra
ENSCGRG00001017959	-	68	54.082	ENSMGAG00000008889	-	95	52.551	Meleagris_gallopavo
ENSCGRG00001017959	-	100	96.516	ENSMAUG00000010262	Smn1	100	96.516	Mesocricetus_auratus
ENSCGRG00001017959	-	96	71.886	ENSMICG00000034708	-	99	84.091	Microcebus_murinus
ENSCGRG00001017959	-	100	94.077	ENSMOCG00000017833	Smn1	100	94.077	Microtus_ochrogaster
ENSCGRG00001017959	-	92	47.407	ENSMMOG00000005504	smn1	96	50.183	Mola_mola
ENSCGRG00001017959	-	100	65.068	ENSMODG00000001436	-	97	65.734	Monodelphis_domestica
ENSCGRG00001017959	-	92	51.852	ENSMALG00000008025	smn1	94	52.963	Monopterus_albus
ENSCGRG00001017959	-	100	94.792	MGP_CAROLIEiJ_G0018836	Smn1	100	95.139	Mus_caroli
ENSCGRG00001017959	-	100	94.792	ENSMUSG00000021645	Smn1	100	95.139	Mus_musculus
ENSCGRG00001017959	-	100	91.289	MGP_PahariEiJ_G0015911	Smn1	100	92.683	Mus_pahari
ENSCGRG00001017959	-	100	94.097	MGP_SPRETEiJ_G0019718	Smn1	100	94.444	Mus_spretus
ENSCGRG00001017959	-	95	86.232	ENSMPUG00000014470	-	98	86.232	Mustela_putorius_furo
ENSCGRG00001017959	-	97	84.083	ENSMLUG00000010603	-	95	83.165	Myotis_lucifugus
ENSCGRG00001017959	-	100	88.235	ENSNGAG00000019833	Smn1	100	88.235	Nannospalax_galili
ENSCGRG00001017959	-	92	49.638	ENSNBRG00000023000	smn1	94	53.731	Neolamprologus_brichardi
ENSCGRG00001017959	-	99	82.534	ENSNLEG00000004454	-	99	82.734	Nomascus_leucogenys
ENSCGRG00001017959	-	78	61.674	ENSMEUG00000011393	-	99	61.674	Notamacropus_eugenii
ENSCGRG00001017959	-	86	77.075	ENSOPRG00000002015	-	100	77.866	Ochotona_princeps
ENSCGRG00001017959	-	95	79.273	ENSODEG00000015976	-	97	79.273	Octodon_degus
ENSCGRG00001017959	-	93	49.640	ENSONIG00000011799	smn1	95	52.330	Oreochromis_niloticus
ENSCGRG00001017959	-	95	62.816	ENSOANG00000001626	-	99	63.158	Ornithorhynchus_anatinus
ENSCGRG00001017959	-	99	75.850	ENSOCUG00000026649	-	99	78.571	Oryctolagus_cuniculus
ENSCGRG00001017959	-	99	74.744	ENSOCUG00000025183	-	99	74.744	Oryctolagus_cuniculus
ENSCGRG00001017959	-	100	80.756	ENSOCUG00000017097	-	99	80.756	Oryctolagus_cuniculus
ENSCGRG00001017959	-	93	50.558	ENSORLG00000010552	smn1	94	53.903	Oryzias_latipes
ENSCGRG00001017959	-	93	52.985	ENSORLG00020007936	smn1	93	52.809	Oryzias_latipes_hni
ENSCGRG00001017959	-	93	50.186	ENSORLG00015022425	smn1	94	52.313	Oryzias_latipes_hsok
ENSCGRG00001017959	-	93	49.813	ENSOMEG00000007824	smn1	94	54.444	Oryzias_melastigma
ENSCGRG00001017959	-	92	73.162	ENSOGAG00000031414	-	100	71.528	Otolemur_garnettii
ENSCGRG00001017959	-	95	78.545	ENSOARG00000005425	-	100	78.182	Ovis_aries
ENSCGRG00001017959	-	97	83.630	ENSPPAG00000036640	-	95	88.000	Pan_paniscus
ENSCGRG00001017959	-	100	83.103	ENSPPRG00000005575	-	100	83.103	Panthera_pardus
ENSCGRG00001017959	-	100	83.162	ENSPTIG00000007745	-	100	83.162	Panthera_tigris_altaica
ENSCGRG00001017959	-	97	82.746	ENSPTRG00000016955	-	95	88.000	Pan_troglodytes
ENSCGRG00001017959	-	95	79.422	ENSPANG00000000253	-	98	79.167	Papio_anubis
ENSCGRG00001017959	-	99	83.562	ENSPANG00000013601	-	99	84.615	Papio_anubis
ENSCGRG00001017959	-	92	49.624	ENSPKIG00000011096	smn1	97	52.015	Paramormyrops_kingsleyae
ENSCGRG00001017959	-	93	54.930	ENSPSIG00000014787	-	90	53.357	Pelodiscus_sinensis
ENSCGRG00001017959	-	93	45.583	ENSPMGG00000012285	smn1	94	48.276	Periophthalmus_magnuspinnatus
ENSCGRG00001017959	-	97	40.972	ENSPMAG00000005004	smn1	96	41.438	Petromyzon_marinus
ENSCGRG00001017959	-	98	66.783	ENSPCIG00000025764	-	99	66.783	Phascolarctos_cinereus
ENSCGRG00001017959	-	93	53.846	ENSPFOG00000007786	smn1	94	53.704	Poecilia_formosa
ENSCGRG00001017959	-	93	54.212	ENSPLAG00000012071	smn1	94	54.074	Poecilia_latipinna
ENSCGRG00001017959	-	93	53.846	ENSPMEG00000017085	smn1	94	53.704	Poecilia_mexicana
ENSCGRG00001017959	-	93	53.091	ENSPREG00000005824	smn1	94	54.444	Poecilia_reticulata
ENSCGRG00001017959	-	86	55.823	ENSPPYG00000019189	-	99	55.823	Pongo_abelii
ENSCGRG00001017959	-	92	82.397	ENSPPYG00000015533	-	97	82.397	Pongo_abelii
ENSCGRG00001017959	-	92	78.967	ENSPCAG00000004187	-	100	78.309	Procavia_capensis
ENSCGRG00001017959	-	90	65.660	ENSPCOG00000022307	-	100	67.170	Propithecus_coquereli
ENSCGRG00001017959	-	97	85.000	ENSPVAG00000005977	-	100	83.618	Pteropus_vampyrus
ENSCGRG00001017959	-	92	49.638	ENSPNYG00000014148	smn1	94	53.731	Pundamilia_nyererei
ENSCGRG00001017959	-	97	47.931	ENSPNAG00000014007	smn1	86	50.352	Pygocentrus_nattereri
ENSCGRG00001017959	-	100	93.403	ENSRNOG00000018067	Smn1	100	93.403	Rattus_norvegicus
ENSCGRG00001017959	-	97	83.986	ENSRBIG00000037052	-	99	85.714	Rhinopithecus_bieti
ENSCGRG00001017959	-	94	71.691	ENSRBIG00000036775	-	92	71.691	Rhinopithecus_bieti
ENSCGRG00001017959	-	97	83.986	ENSRROG00000039399	-	99	85.714	Rhinopithecus_roxellana
ENSCGRG00001017959	-	98	71.228	ENSRROG00000031088	-	97	71.228	Rhinopithecus_roxellana
ENSCGRG00001017959	-	97	80.000	ENSSBOG00000011665	-	99	80.412	Saimiri_boliviensis_boliviensis
ENSCGRG00001017959	-	84	76.000	ENSSBOG00000020112	-	87	76.400	Saimiri_boliviensis_boliviensis
ENSCGRG00001017959	-	100	65.753	ENSSHAG00000001499	-	100	64.130	Sarcophilus_harrisii
ENSCGRG00001017959	-	93	53.285	ENSSFOG00015015507	smn1	94	53.285	Scleropages_formosus
ENSCGRG00001017959	-	93	48.736	ENSSMAG00000007922	smn1	94	50.545	Scophthalmus_maximus
ENSCGRG00001017959	-	93	51.825	ENSSDUG00000018533	smn1	94	52.222	Seriola_dumerili
ENSCGRG00001017959	-	93	52.190	ENSSLDG00000021135	smn1	94	52.593	Seriola_lalandi_dorsalis
ENSCGRG00001017959	-	96	60.215	ENSSPUG00000000373	-	95	60.432	Sphenodon_punctatus
ENSCGRG00001017959	-	93	51.636	ENSSPAG00000004345	smn1	94	52.364	Stegastes_partitus
ENSCGRG00001017959	-	97	81.915	ENSSSCG00000016970	-	100	82.935	Sus_scrofa
ENSCGRG00001017959	-	74	49.289	ENSSSCG00000033865	-	92	55.769	Sus_scrofa
ENSCGRG00001017959	-	97	62.500	ENSSSCG00000029127	-	96	63.380	Sus_scrofa
ENSCGRG00001017959	-	94	57.914	ENSTGUG00000001548	-	100	54.545	Taeniopygia_guttata
ENSCGRG00001017959	-	93	47.619	ENSTRUG00000000736	smn	95	48.507	Takifugu_rubripes
ENSCGRG00001017959	-	93	49.462	ENSTNIG00000009892	smn1	95	50.179	Tetraodon_nigroviridis
ENSCGRG00001017959	-	66	84.896	ENSTBEG00000002399	-	93	84.896	Tupaia_belangeri
ENSCGRG00001017959	-	97	80.142	ENSTTRG00000005080	-	100	78.983	Tursiops_truncatus
ENSCGRG00001017959	-	63	85.326	ENSUAMG00000024947	-	70	84.896	Ursus_americanus
ENSCGRG00001017959	-	97	85.461	ENSUMAG00000007842	-	74	85.172	Ursus_maritimus
ENSCGRG00001017959	-	92	72.932	ENSVPAG00000009887	-	100	71.942	Vicugna_pacos
ENSCGRG00001017959	-	100	85.172	ENSVVUG00000006934	-	100	85.172	Vulpes_vulpes
ENSCGRG00001017959	-	95	54.448	ENSXETG00000018189	smn2	96	54.325	Xenopus_tropicalis
ENSCGRG00001017959	-	100	37.049	ENSXETG00000004912	-	78	63.934	Xenopus_tropicalis
ENSCGRG00001017959	-	93	52.158	ENSXMAG00000001521	smn1	95	53.137	Xiphophorus_maculatus