EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001019411 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 105099 bases
Position: chrscaffold_5:26320919-26426017
Accession: 100760243
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001020238	XRN_N	PF03159.18	1.4e-96	1	1
ENSCGRP00001020232	XRN_N	PF03159.18	4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001024476	-	5181	XM_003495487	ENSCGRP00001020232	1726 (aa)	XP_003495535	G3GSY8
ENSCGRT00001024482	-	2910	-	ENSCGRP00001020238	969 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001019411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001019411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001019411	Xrn1	61	38.733	ENSCGRG00001010676	Xrn2	73	39.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001019411	Xrn1	99	95.721	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSCGRG00001019411	Xrn1	99	78.730	ENSAPOG00000000622	xrn1	93	77.754	Acanthochromis_polyacanthus
ENSCGRG00001019411	Xrn1	99	95.563	ENSAMEG00000012538	XRN1	100	89.562	Ailuropoda_melanoleuca
ENSCGRG00001019411	Xrn1	99	78.130	ENSACIG00000001057	xrn1	93	72.276	Amphilophus_citrinellus
ENSCGRG00001019411	Xrn1	99	78.855	ENSAOCG00000014097	xrn1	95	68.110	Amphiprion_ocellaris
ENSCGRG00001019411	Xrn1	99	78.855	ENSAPEG00000006620	xrn1	91	72.178	Amphiprion_percula
ENSCGRG00001019411	Xrn1	99	76.592	ENSATEG00000009752	xrn1	96	70.695	Anabas_testudineus
ENSCGRG00001019411	Xrn1	96	88.411	ENSAPLG00000004905	XRN1	100	75.537	Anas_platyrhynchos
ENSCGRG00001019411	Xrn1	99	86.190	ENSACAG00000004985	XRN1	100	72.640	Anolis_carolinensis
ENSCGRG00001019411	Xrn1	99	96.343	ENSANAG00000029013	XRN1	99	94.616	Aotus_nancymaae
ENSCGRG00001019411	Xrn1	99	77.179	ENSACLG00000004806	xrn1	95	61.885	Astatotilapia_calliptera
ENSCGRG00001019411	Xrn1	99	73.810	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSCGRG00001019411	Xrn1	99	94.612	ENSBTAG00000011524	XRN1	100	86.625	Bos_taurus
ENSCGRG00001019411	Xrn1	93	52.782	WBGene00012730	xrn-1	80	38.720	Caenorhabditis_elegans
ENSCGRG00001019411	Xrn1	99	95.880	ENSCJAG00000001872	XRN1	100	87.637	Callithrix_jacchus
ENSCGRG00001019411	Xrn1	99	95.721	ENSCAFG00000007783	XRN1	100	89.948	Canis_familiaris
ENSCGRG00001019411	Xrn1	99	95.721	ENSCAFG00020009120	XRN1	99	93.402	Canis_lupus_dingo
ENSCGRG00001019411	Xrn1	99	94.929	ENSCHIG00000019192	XRN1	99	88.940	Capra_hircus
ENSCGRG00001019411	Xrn1	99	95.880	ENSTSYG00000002705	XRN1	100	88.279	Carlito_syrichta
ENSCGRG00001019411	Xrn1	97	73.333	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSCGRG00001019411	Xrn1	100	95.975	ENSCCAG00000034800	XRN1	100	95.975	Cebus_capucinus
ENSCGRG00001019411	Xrn1	99	96.355	ENSCATG00000041794	XRN1	100	88.042	Cercocebus_atys
ENSCGRG00001019411	Xrn1	99	95.880	ENSCLAG00000001451	XRN1	99	95.880	Chinchilla_lanigera
ENSCGRG00001019411	Xrn1	99	96.513	ENSCSAG00000011265	XRN1	100	87.328	Chlorocebus_sabaeus
ENSCGRG00001019411	Xrn1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSCGRG00001019411	Xrn1	84	61.538	ENSCSAVG00000008584	-	98	44.914	Ciona_savignyi
ENSCGRG00001019411	Xrn1	100	95.975	ENSCANG00000037495	XRN1	100	95.975	Colobus_angolensis_palliatus
ENSCGRG00001019411	Xrn1	100	100.000	ENSCGRG00000012464	Xrn1	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001019411	Xrn1	99	77.937	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCGRG00001019411	Xrn1	99	68.189	ENSCVAG00000013089	xrn1	99	71.781	Cyprinodon_variegatus
ENSCGRG00001019411	Xrn1	99	79.239	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCGRG00001019411	Xrn1	99	95.231	ENSDORG00000013833	Xrn1	100	86.455	Dipodomys_ordii
ENSCGRG00001019411	Xrn1	94	55.630	FBgn0020261	pcm	76	39.846	Drosophila_melanogaster
ENSCGRG00001019411	Xrn1	86	98.198	ENSETEG00000003978	XRN1	88	97.581	Echinops_telfairi
ENSCGRG00001019411	Xrn1	100	95.150	ENSEASG00005002687	XRN1	100	95.150	Equus_asinus_asinus
ENSCGRG00001019411	Xrn1	99	95.721	ENSECAG00000008301	XRN1	100	86.525	Equus_caballus
ENSCGRG00001019411	Xrn1	84	95.797	ENSEEUG00000011323	XRN1	92	82.014	Erinaceus_europaeus
ENSCGRG00001019411	Xrn1	99	78.323	ENSELUG00000000169	xrn1	100	61.189	Esox_lucius
ENSCGRG00001019411	Xrn1	99	93.413	ENSFCAG00000027589	XRN1	99	94.725	Felis_catus
ENSCGRG00001019411	Xrn1	99	88.076	ENSFALG00000007021	XRN1	100	73.918	Ficedula_albicollis
ENSCGRG00001019411	Xrn1	100	94.737	ENSFDAG00000020494	XRN1	100	94.737	Fukomys_damarensis
ENSCGRG00001019411	Xrn1	50	70.478	ENSFHEG00000017356	-	98	69.854	Fundulus_heteroclitus
ENSCGRG00001019411	Xrn1	99	76.312	ENSGMOG00000006396	xrn1	83	67.699	Gadus_morhua
ENSCGRG00001019411	Xrn1	99	88.394	ENSGALG00000002706	XRN1	100	74.493	Gallus_gallus
ENSCGRG00001019411	Xrn1	99	77.143	ENSGACG00000014328	xrn1	100	60.113	Gasterosteus_aculeatus
ENSCGRG00001019411	Xrn1	99	87.143	ENSGAGG00000017535	XRN1	99	77.517	Gopherus_agassizii
ENSCGRG00001019411	Xrn1	99	95.880	ENSGGOG00000008047	XRN1	100	87.753	Gorilla_gorilla
ENSCGRG00001019411	Xrn1	99	75.594	ENSHBUG00000005908	xrn1	98	73.306	Haplochromis_burtoni
ENSCGRG00001019411	Xrn1	99	95.880	ENSHGLG00000014476	XRN1	99	95.880	Heterocephalus_glaber_female
ENSCGRG00001019411	Xrn1	99	95.880	ENSHGLG00100015130	XRN1	99	95.880	Heterocephalus_glaber_male
ENSCGRG00001019411	Xrn1	99	76.462	ENSHCOG00000014062	xrn1	98	70.913	Hippocampus_comes
ENSCGRG00001019411	Xrn1	99	79.213	ENSIPUG00000015229	xrn1	96	63.859	Ictalurus_punctatus
ENSCGRG00001019411	Xrn1	99	96.355	ENSSTOG00000013552	XRN1	99	96.355	Ictidomys_tridecemlineatus
ENSCGRG00001019411	Xrn1	97	95.021	ENSJJAG00000010863	Xrn1	100	95.021	Jaculus_jaculus
ENSCGRG00001019411	Xrn1	99	78.754	ENSKMAG00000021356	xrn1	94	76.582	Kryptolebias_marmoratus
ENSCGRG00001019411	Xrn1	99	77.742	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCGRG00001019411	Xrn1	99	83.968	ENSLACG00000009020	XRN1	100	69.279	Latimeria_chalumnae
ENSCGRG00001019411	Xrn1	99	81.833	ENSLOCG00000007944	xrn1	99	65.282	Lepisosteus_oculatus
ENSCGRG00001019411	Xrn1	99	95.548	ENSLAFG00000015426	XRN1	100	94.294	Loxodonta_africana
ENSCGRG00001019411	Xrn1	99	96.355	ENSMFAG00000032599	XRN1	100	88.099	Macaca_fascicularis
ENSCGRG00001019411	Xrn1	99	96.355	ENSMMUG00000014038	XRN1	100	88.099	Macaca_mulatta
ENSCGRG00001019411	Xrn1	99	96.038	ENSMNEG00000034217	XRN1	100	87.926	Macaca_nemestrina
ENSCGRG00001019411	Xrn1	99	78.730	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSCGRG00001019411	Xrn1	99	77.179	ENSMZEG00005015099	xrn1	95	61.827	Maylandia_zebra
ENSCGRG00001019411	Xrn1	97	84.158	ENSMGAG00000006333	XRN1	100	74.404	Meleagris_gallopavo
ENSCGRG00001019411	Xrn1	99	95.563	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCGRG00001019411	Xrn1	100	96.904	ENSMOCG00000008665	Xrn1	100	96.904	Microtus_ochrogaster
ENSCGRG00001019411	Xrn1	54	68.450	ENSMMOG00000020896	-	96	68.081	Mola_mola
ENSCGRG00001019411	Xrn1	99	88.694	ENSMODG00000021236	XRN1	100	78.000	Monodelphis_domestica
ENSCGRG00001019411	Xrn1	99	70.952	ENSMALG00000004098	xrn1	100	56.349	Monopterus_albus
ENSCGRG00001019411	Xrn1	99	97.723	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCGRG00001019411	Xrn1	99	98.257	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCGRG00001019411	Xrn1	99	97.940	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCGRG00001019411	Xrn1	99	98.257	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCGRG00001019411	Xrn1	99	96.038	ENSMPUG00000012040	XRN1	100	87.271	Mustela_putorius_furo
ENSCGRG00001019411	Xrn1	98	95.231	ENSMLUG00000016885	XRN1	100	87.002	Myotis_lucifugus
ENSCGRG00001019411	Xrn1	99	92.946	ENSNGAG00000023964	Xrn1	100	92.946	Nannospalax_galili
ENSCGRG00001019411	Xrn1	99	96.513	ENSNLEG00000004726	XRN1	100	87.926	Nomascus_leucogenys
ENSCGRG00001019411	Xrn1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSCGRG00001019411	Xrn1	74	89.130	ENSOPRG00000007337	-	78	83.680	Ochotona_princeps
ENSCGRG00001019411	Xrn1	99	78.095	ENSONIG00000016673	xrn1	99	64.668	Oreochromis_niloticus
ENSCGRG00001019411	Xrn1	85	87.298	ENSOANG00000006735	XRN1	100	75.622	Ornithorhynchus_anatinus
ENSCGRG00001019411	Xrn1	99	95.721	ENSOCUG00000001861	XRN1	100	88.245	Oryctolagus_cuniculus
ENSCGRG00001019411	Xrn1	99	79.463	ENSORLG00000013005	xrn1	100	59.842	Oryzias_latipes
ENSCGRG00001019411	Xrn1	99	79.206	ENSORLG00020005559	xrn1	100	60.889	Oryzias_latipes_hni
ENSCGRG00001019411	Xrn1	99	78.730	ENSORLG00015022523	xrn1	89	72.138	Oryzias_latipes_hsok
ENSCGRG00001019411	Xrn1	99	78.889	ENSOMEG00000015397	xrn1	99	72.823	Oryzias_melastigma
ENSCGRG00001019411	Xrn1	99	90.808	ENSOGAG00000000170	XRN1	100	84.404	Otolemur_garnettii
ENSCGRG00001019411	Xrn1	99	95.087	ENSOARG00000006343	XRN1	99	88.563	Ovis_aries
ENSCGRG00001019411	Xrn1	99	95.404	ENSPPAG00000010180	XRN1	100	87.688	Pan_paniscus
ENSCGRG00001019411	Xrn1	99	95.411	ENSPPRG00000007125	XRN1	100	87.991	Panthera_pardus
ENSCGRG00001019411	Xrn1	99	95.411	ENSPTIG00000021081	XRN1	100	87.991	Panthera_tigris_altaica
ENSCGRG00001019411	Xrn1	99	95.404	ENSPTRG00000015482	XRN1	100	87.803	Pan_troglodytes
ENSCGRG00001019411	Xrn1	99	96.355	ENSPANG00000010638	XRN1	100	87.984	Papio_anubis
ENSCGRG00001019411	Xrn1	99	87.322	ENSPSIG00000018050	XRN1	100	76.114	Pelodiscus_sinensis
ENSCGRG00001019411	Xrn1	99	73.760	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSCGRG00001019411	Xrn1	100	98.142	ENSPEMG00000020610	Xrn1	100	98.142	Peromyscus_maniculatus_bairdii
ENSCGRG00001019411	Xrn1	92	58.962	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSCGRG00001019411	Xrn1	99	88.871	ENSPCIG00000028735	XRN1	99	88.604	Phascolarctos_cinereus
ENSCGRG00001019411	Xrn1	99	77.953	ENSPFOG00000013932	xrn1	99	62.930	Poecilia_formosa
ENSCGRG00001019411	Xrn1	99	78.095	ENSPLAG00000021653	xrn1	99	62.841	Poecilia_latipinna
ENSCGRG00001019411	Xrn1	99	77.971	ENSPMEG00000003076	xrn1	95	63.395	Poecilia_mexicana
ENSCGRG00001019411	Xrn1	99	77.603	ENSPREG00000021147	xrn1	100	59.989	Poecilia_reticulata
ENSCGRG00001019411	Xrn1	99	96.197	ENSPPYG00000014172	XRN1	100	87.099	Pongo_abelii
ENSCGRG00001019411	Xrn1	92	94.322	ENSPCAG00000005638	XRN1	96	79.974	Procavia_capensis
ENSCGRG00001019411	Xrn1	100	95.562	ENSPCOG00000013089	XRN1	99	95.880	Propithecus_coquereli
ENSCGRG00001019411	Xrn1	99	93.373	ENSPVAG00000016265	XRN1	96	90.381	Pteropus_vampyrus
ENSCGRG00001019411	Xrn1	99	77.179	ENSPNYG00000010570	xrn1	94	70.741	Pundamilia_nyererei
ENSCGRG00001019411	Xrn1	99	76.777	ENSPNAG00000023531	xrn1	98	60.997	Pygocentrus_nattereri
ENSCGRG00001019411	Xrn1	99	97.940	ENSRNOG00000042951	Xrn1	100	92.241	Rattus_norvegicus
ENSCGRG00001019411	Xrn1	99	96.038	ENSRBIG00000041227	XRN1	100	87.002	Rhinopithecus_bieti
ENSCGRG00001019411	Xrn1	91	54.223	YGL173C	XRN1	73	54.223	Saccharomyces_cerevisiae
ENSCGRG00001019411	Xrn1	99	96.355	ENSSBOG00000029561	XRN1	100	87.695	Saimiri_boliviensis_boliviensis
ENSCGRG00001019411	Xrn1	96	88.449	ENSSHAG00000016207	XRN1	100	78.696	Sarcophilus_harrisii
ENSCGRG00001019411	Xrn1	99	78.696	ENSSFOG00015024211	xrn1	96	63.123	Scleropages_formosus
ENSCGRG00001019411	Xrn1	99	79.556	ENSSMAG00000016534	xrn1	95	71.971	Scophthalmus_maximus
ENSCGRG00001019411	Xrn1	99	79.114	ENSSDUG00000010306	xrn1	97	72.136	Seriola_dumerili
ENSCGRG00001019411	Xrn1	99	79.114	ENSSLDG00000021543	xrn1	100	71.304	Seriola_lalandi_dorsalis
ENSCGRG00001019411	Xrn1	89	91.556	ENSSARG00000007741	-	81	83.781	Sorex_araneus
ENSCGRG00001019411	Xrn1	50	77.172	ENSSPAG00000009856	-	96	77.172	Stegastes_partitus
ENSCGRG00001019411	Xrn1	99	88.076	ENSTGUG00000008498	XRN1	100	75.245	Taeniopygia_guttata
ENSCGRG00001019411	Xrn1	99	76.387	ENSTRUG00000004895	xrn1	96	75.316	Takifugu_rubripes
ENSCGRG00001019411	Xrn1	97	76.112	ENSTNIG00000017615	xrn1	100	57.466	Tetraodon_nigroviridis
ENSCGRG00001019411	Xrn1	91	97.305	ENSTBEG00000003256	XRN1	89	86.762	Tupaia_belangeri
ENSCGRG00001019411	Xrn1	99	94.277	ENSTTRG00000012914	XRN1	100	82.674	Tursiops_truncatus
ENSCGRG00001019411	Xrn1	99	94.910	ENSUAMG00000001608	XRN1	99	92.355	Ursus_americanus
ENSCGRG00001019411	Xrn1	99	96.038	ENSUMAG00000013625	XRN1	100	90.358	Ursus_maritimus
ENSCGRG00001019411	Xrn1	99	95.880	ENSVPAG00000004690	XRN1	100	84.174	Vicugna_pacos
ENSCGRG00001019411	Xrn1	99	96.038	ENSVVUG00000024461	XRN1	99	96.038	Vulpes_vulpes
ENSCGRG00001019411	Xrn1	99	82.306	ENSXETG00000000619	xrn1	99	88.542	Xenopus_tropicalis
ENSCGRG00001019411	Xrn1	99	77.266	ENSXCOG00000007917	xrn1	98	71.313	Xiphophorus_couchianus
ENSCGRG00001019411	Xrn1	99	76.630	ENSXMAG00000018320	xrn1	98	71.556	Xiphophorus_maculatus