EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001019595 (Gene tree)
Gene ID: -
Gene Symbol: Smg6
Alias: -
Full Name: Smg-6 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 53250 bases
Position: chrscaffold_4:87693888-87747137
Accession: 2144117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001020430	EST1	PF10374.9	1.7e-14	1	1
ENSCGRP00001020430	EST1_DNA_bind	PF10373.9	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001024674	-	2391	-	ENSCGRP00001020430	797 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001019595's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001019595's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001019595	Smg6	98	86.189	ENSG00000070366	SMG6	55	86.189	Homo_sapiens
ENSCGRG00001019595	Smg6	100	88.235	ENSAMEG00000007632	SMG6	55	88.235	Ailuropoda_melanoleuca
ENSCGRG00001019595	Smg6	98	50.253	ENSACAG00000011783	SMG6	59	51.960	Anolis_carolinensis
ENSCGRG00001019595	Smg6	98	86.829	ENSANAG00000035760	SMG6	55	86.829	Aotus_nancymaae
ENSCGRG00001019595	Smg6	98	87.852	ENSBTAG00000000267	SMG6	55	87.852	Bos_taurus
ENSCGRG00001019595	Smg6	98	86.701	ENSCJAG00000001820	SMG6	55	86.701	Callithrix_jacchus
ENSCGRG00001019595	Smg6	100	87.933	ENSCAFG00000019260	SMG6	55	87.933	Canis_familiaris
ENSCGRG00001019595	Smg6	97	87.933	ENSCAFG00020009770	SMG6	55	87.933	Canis_lupus_dingo
ENSCGRG00001019595	Smg6	98	86.957	ENSCHIG00000021998	SMG6	55	86.957	Capra_hircus
ENSCGRG00001019595	Smg6	98	87.852	ENSTSYG00000003406	SMG6	55	88.062	Carlito_syrichta
ENSCGRG00001019595	Smg6	94	79.679	ENSCAPG00000016197	SMG6	59	79.679	Cavia_aperea
ENSCGRG00001019595	Smg6	100	86.923	ENSCPOG00000014878	SMG6	57	86.923	Cavia_porcellus
ENSCGRG00001019595	Smg6	98	86.957	ENSCCAG00000035801	SMG6	55	86.957	Cebus_capucinus
ENSCGRG00001019595	Smg6	98	87.724	ENSCATG00000031956	SMG6	55	87.724	Cercocebus_atys
ENSCGRG00001019595	Smg6	97	89.730	ENSCLAG00000006748	SMG6	55	89.730	Chinchilla_lanigera
ENSCGRG00001019595	Smg6	100	88.107	ENSCSAG00000013800	SMG6	55	88.107	Chlorocebus_sabaeus
ENSCGRG00001019595	Smg6	73	98.020	ENSCHOG00000005024	-	52	98.020	Choloepus_hoffmanni
ENSCGRG00001019595	Smg6	98	62.889	ENSCPBG00000020369	SMG6	55	63.885	Chrysemys_picta_bellii
ENSCGRG00001019595	Smg6	94	87.367	ENSCANG00000031764	SMG6	54	87.367	Colobus_angolensis_palliatus
ENSCGRG00001019595	Smg6	96	99.060	ENSCGRG00000007782	Smg6	56	99.060	Cricetulus_griseus_crigri
ENSCGRG00001019595	Smg6	100	87.548	ENSDNOG00000048283	SMG6	55	87.548	Dasypus_novemcinctus
ENSCGRG00001019595	Smg6	99	84.928	ENSDORG00000016614	Smg6	62	78.916	Dipodomys_ordii
ENSCGRG00001019595	Smg6	100	85.531	ENSETEG00000016790	SMG6	55	85.733	Echinops_telfairi
ENSCGRG00001019595	Smg6	98	88.363	ENSEASG00005009318	SMG6	54	88.575	Equus_asinus_asinus
ENSCGRG00001019595	Smg6	98	88.235	ENSECAG00000006519	SMG6	54	88.447	Equus_caballus
ENSCGRG00001019595	Smg6	94	83.520	ENSEEUG00000003493	SMG6	50	83.520	Erinaceus_europaeus
ENSCGRG00001019595	Smg6	100	88.875	ENSFCAG00000028817	SMG6	55	88.875	Felis_catus
ENSCGRG00001019595	Smg6	96	76.667	ENSFALG00000006538	SMG6	54	61.619	Ficedula_albicollis
ENSCGRG00001019595	Smg6	100	88.348	ENSFDAG00000015106	SMG6	55	88.348	Fukomys_damarensis
ENSCGRG00001019595	Smg6	98	61.202	ENSGALG00000003108	SMG6	59	61.452	Gallus_gallus
ENSCGRG00001019595	Smg6	94	61.558	ENSGAGG00000025617	SMG6	54	62.597	Gopherus_agassizii
ENSCGRG00001019595	Smg6	98	87.852	ENSGGOG00000017156	SMG6	55	87.852	Gorilla_gorilla
ENSCGRG00001019595	Smg6	100	87.324	ENSHGLG00000012882	SMG6	59	85.554	Heterocephalus_glaber_female
ENSCGRG00001019595	Smg6	100	87.452	ENSHGLG00100017815	SMG6	59	85.679	Heterocephalus_glaber_male
ENSCGRG00001019595	Smg6	100	90.026	ENSSTOG00000028127	SMG6	55	90.244	Ictidomys_tridecemlineatus
ENSCGRG00001019595	Smg6	100	90.372	ENSJJAG00000015367	Smg6	64	90.372	Jaculus_jaculus
ENSCGRG00001019595	Smg6	94	55.867	ENSLACG00000000806	-	94	57.033	Latimeria_chalumnae
ENSCGRG00001019595	Smg6	98	86.829	ENSLAFG00000001261	SMG6	55	86.829	Loxodonta_africana
ENSCGRG00001019595	Smg6	98	88.107	ENSMFAG00000003394	SMG6	55	88.107	Macaca_fascicularis
ENSCGRG00001019595	Smg6	98	88.107	ENSMMUG00000023161	SMG6	55	88.107	Macaca_mulatta
ENSCGRG00001019595	Smg6	98	87.661	ENSMNEG00000044592	SMG6	56	87.661	Macaca_nemestrina
ENSCGRG00001019595	Smg6	94	87.701	ENSMLEG00000029353	SMG6	61	84.243	Mandrillus_leucophaeus
ENSCGRG00001019595	Smg6	99	76.667	ENSMGAG00000005401	-	74	61.118	Meleagris_gallopavo
ENSCGRG00001019595	Smg6	98	90.281	ENSMICG00000012913	SMG6	55	90.281	Microcebus_murinus
ENSCGRG00001019595	Smg6	99	38.010	ENSMMOG00000010883	smg6	59	38.639	Mola_mola
ENSCGRG00001019595	Smg6	100	77.962	ENSMODG00000010622	SMG6	55	77.962	Monodelphis_domestica
ENSCGRG00001019595	Smg6	98	93.726	MGP_CAROLIEiJ_G0016729	Smg6	67	98.745	Mus_caroli
ENSCGRG00001019595	Smg6	98	93.470	ENSMUSG00000038290	Smg6	67	97.908	Mus_musculus
ENSCGRG00001019595	Smg6	98	93.086	MGP_PahariEiJ_G0017866	Smg6	67	98.326	Mus_pahari
ENSCGRG00001019595	Smg6	98	93.470	MGP_SPRETEiJ_G0017572	Smg6	67	98.326	Mus_spretus
ENSCGRG00001019595	Smg6	100	87.852	ENSMPUG00000013046	SMG6	55	87.852	Mustela_putorius_furo
ENSCGRG00001019595	Smg6	100	87.291	ENSMLUG00000005739	SMG6	55	87.291	Myotis_lucifugus
ENSCGRG00001019595	Smg6	100	88.575	ENSNGAG00000007287	Smg6	66	88.575	Nannospalax_galili
ENSCGRG00001019595	Smg6	95	86.262	ENSNLEG00000017171	SMG6	54	86.262	Nomascus_leucogenys
ENSCGRG00001019595	Smg6	94	72.185	ENSMEUG00000015804	SMG6	56	76.667	Notamacropus_eugenii
ENSCGRG00001019595	Smg6	100	77.294	ENSODEG00000008038	SMG6	62	77.294	Octodon_degus
ENSCGRG00001019595	Smg6	97	43.704	ENSONIG00000005594	smg6	53	44.689	Oreochromis_niloticus
ENSCGRG00001019595	Smg6	100	89.003	ENSOCUG00000013018	SMG6	55	89.003	Oryctolagus_cuniculus
ENSCGRG00001019595	Smg6	100	88.889	ENSOGAG00000004483	SMG6	55	89.103	Otolemur_garnettii
ENSCGRG00001019595	Smg6	100	83.780	ENSOARG00000015076	SMG6	54	86.364	Ovis_aries
ENSCGRG00001019595	Smg6	98	87.724	ENSPPAG00000043296	SMG6	55	87.724	Pan_paniscus
ENSCGRG00001019595	Smg6	100	89.003	ENSPPRG00000014581	SMG6	55	89.003	Panthera_pardus
ENSCGRG00001019595	Smg6	96	88.904	ENSPTIG00000008925	SMG6	53	88.904	Panthera_tigris_altaica
ENSCGRG00001019595	Smg6	98	87.724	ENSPTRG00000008544	SMG6	55	87.724	Pan_troglodytes
ENSCGRG00001019595	Smg6	98	87.724	ENSPANG00000024588	SMG6	55	87.724	Papio_anubis
ENSCGRG00001019595	Smg6	96	76.667	ENSPSIG00000006660	SMG6	58	61.966	Pelodiscus_sinensis
ENSCGRG00001019595	Smg6	97	41.726	ENSPMGG00000000844	smg6	54	41.935	Periophthalmus_magnuspinnatus
ENSCGRG00001019595	Smg6	100	96.154	ENSPEMG00000020707	Smg6	55	96.154	Peromyscus_maniculatus_bairdii
ENSCGRG00001019595	Smg6	97	43.552	ENSPFOG00000012035	smg6	53	42.527	Poecilia_formosa
ENSCGRG00001019595	Smg6	100	85.494	ENSPPYG00000007790	SMG6	55	85.494	Pongo_abelii
ENSCGRG00001019595	Smg6	97	85.366	ENSPCAG00000000552	SMG6	55	85.366	Procavia_capensis
ENSCGRG00001019595	Smg6	100	89.642	ENSPCOG00000020925	SMG6	55	89.642	Propithecus_coquereli
ENSCGRG00001019595	Smg6	100	94.087	ENSRNOG00000003041	Smg6	67	98.745	Rattus_norvegicus
ENSCGRG00001019595	Smg6	98	88.107	ENSRBIG00000024746	SMG6	55	88.107	Rhinopithecus_bieti
ENSCGRG00001019595	Smg6	98	88.235	ENSRROG00000030423	SMG6	56	88.447	Rhinopithecus_roxellana
ENSCGRG00001019595	Smg6	98	86.701	ENSSBOG00000022518	SMG6	56	86.701	Saimiri_boliviensis_boliviensis
ENSCGRG00001019595	Smg6	96	77.939	ENSSHAG00000010045	SMG6	53	77.778	Sarcophilus_harrisii
ENSCGRG00001019595	Smg6	99	63.415	ENSSPUG00000007152	SMG6	54	58.157	Sphenodon_punctatus
ENSCGRG00001019595	Smg6	98	87.468	ENSSSCG00000017826	SMG6	56	87.166	Sus_scrofa
ENSCGRG00001019595	Smg6	100	61.323	ENSTGUG00000005836	SMG6	55	61.578	Taeniopygia_guttata
ENSCGRG00001019595	Smg6	98	41.330	ENSTNIG00000016164	smg6	55	40.811	Tetraodon_nigroviridis
ENSCGRG00001019595	Smg6	100	87.789	ENSTBEG00000011424	SMG6	55	87.789	Tupaia_belangeri
ENSCGRG00001019595	Smg6	100	88.875	ENSUAMG00000025152	SMG6	55	88.875	Ursus_americanus
ENSCGRG00001019595	Smg6	94	88.770	ENSUMAG00000009306	SMG6	54	88.993	Ursus_maritimus
ENSCGRG00001019595	Smg6	90	85.178	ENSVPAG00000000225	SMG6	51	85.178	Vicugna_pacos
ENSCGRG00001019595	Smg6	97	87.420	ENSVVUG00000021727	SMG6	55	87.420	Vulpes_vulpes
ENSCGRG00001019595	Smg6	94	52.918	ENSXETG00000023799	SMG6	54	52.264	Xenopus_tropicalis