EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001021067 (Gene tree)
Gene ID: -
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1 regulator of nonsense transcripts homolog (yeast)
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 24583 bases
Position: chrscaffold_29:14595008-14619590
Accession: 107995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001022592	UPF1_Zn_bind	PF09416.10	5.8e-75	1	1
ENSCGRP00001022573	UPF1_Zn_bind	PF09416.10	6.2e-75	1	1
ENSCGRP00001022573	ResIII	PF04851.15	2.4e-05	1	1
ENSCGRP00001022592	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001026818	-	6982	-	ENSCGRP00001022573	1113 (aa)	-	UPI00042AC6DE
ENSCGRT00001026837	-	3312	-	ENSCGRP00001022592	1103 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001021067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001021067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001021067	Upf1	100	98.569	ENSG00000005007	UPF1	100	98.569	Homo_sapiens
ENSCGRG00001021067	Upf1	100	92.473	ENSAPOG00000010916	-	100	92.473	Acanthochromis_polyacanthus
ENSCGRG00001021067	Upf1	100	91.421	ENSAPOG00000023773	upf1	100	91.510	Acanthochromis_polyacanthus
ENSCGRG00001021067	Upf1	100	97.074	ENSAMEG00000011474	UPF1	100	97.074	Ailuropoda_melanoleuca
ENSCGRG00001021067	Upf1	92	94.341	ENSACIG00000010985	-	100	94.439	Amphilophus_citrinellus
ENSCGRG00001021067	Upf1	100	91.161	ENSACIG00000019949	upf1	100	91.600	Amphilophus_citrinellus
ENSCGRG00001021067	Upf1	100	92.473	ENSAOCG00000006352	-	100	92.473	Amphiprion_ocellaris
ENSCGRG00001021067	Upf1	100	90.934	ENSAOCG00000018519	upf1	100	91.416	Amphiprion_ocellaris
ENSCGRG00001021067	Upf1	100	92.473	ENSAPEG00000006292	-	100	92.473	Amphiprion_percula
ENSCGRG00001021067	Upf1	100	90.934	ENSAPEG00000016344	upf1	100	91.416	Amphiprion_percula
ENSCGRG00001021067	Upf1	100	90.106	ENSATEG00000017867	upf1	100	90.813	Anabas_testudineus
ENSCGRG00001021067	Upf1	100	92.563	ENSATEG00000016606	-	100	92.563	Anabas_testudineus
ENSCGRG00001021067	Upf1	93	97.336	ENSAPLG00000009175	UPF1	99	97.336	Anas_platyrhynchos
ENSCGRG00001021067	Upf1	96	94.917	ENSANAG00000024107	UPF1	98	94.917	Aotus_nancymaae
ENSCGRG00001021067	Upf1	100	90.893	ENSACLG00000007181	upf1	100	91.332	Astatotilapia_calliptera
ENSCGRG00001021067	Upf1	100	92.204	ENSACLG00000022630	-	100	92.115	Astatotilapia_calliptera
ENSCGRG00001021067	Upf1	100	92.838	ENSAMXG00000042187	upf1	100	93.286	Astyanax_mexicanus
ENSCGRG00001021067	Upf1	100	97.693	ENSBTAG00000020922	UPF1	100	97.693	Bos_taurus
ENSCGRG00001021067	Upf1	89	50.889	WBGene00004880	smg-2	99	48.245	Caenorhabditis_elegans
ENSCGRG00001021067	Upf1	100	97.609	ENSCJAG00000019627	UPF1	100	97.609	Callithrix_jacchus
ENSCGRG00001021067	Upf1	100	97.611	ENSCAFG00000014578	UPF1	100	97.611	Canis_familiaris
ENSCGRG00001021067	Upf1	100	98.570	ENSCAFG00020012347	UPF1	100	98.570	Canis_lupus_dingo
ENSCGRG00001021067	Upf1	100	98.656	ENSCHIG00000011018	UPF1	100	98.656	Capra_hircus
ENSCGRG00001021067	Upf1	96	96.468	ENSTSYG00000008877	UPF1	99	96.468	Carlito_syrichta
ENSCGRG00001021067	Upf1	94	97.624	ENSCAPG00000005758	UPF1	95	97.624	Cavia_aperea
ENSCGRG00001021067	Upf1	100	95.826	ENSCPOG00000025463	UPF1	100	95.826	Cavia_porcellus
ENSCGRG00001021067	Upf1	100	98.569	ENSCCAG00000032175	UPF1	100	98.569	Cebus_capucinus
ENSCGRG00001021067	Upf1	95	96.720	ENSCATG00000040306	UPF1	98	96.720	Cercocebus_atys
ENSCGRG00001021067	Upf1	96	97.037	ENSCLAG00000004037	UPF1	100	98.194	Chinchilla_lanigera
ENSCGRG00001021067	Upf1	100	98.479	ENSCSAG00000005276	UPF1	100	98.479	Chlorocebus_sabaeus
ENSCGRG00001021067	Upf1	100	96.598	ENSCPBG00000012513	UPF1	100	96.598	Chrysemys_picta_bellii
ENSCGRG00001021067	Upf1	79	77.702	ENSCING00000021399	-	99	78.687	Ciona_intestinalis
ENSCGRG00001021067	Upf1	99	72.291	ENSCSAVG00000006533	-	99	72.291	Ciona_savignyi
ENSCGRG00001021067	Upf1	95	97.196	ENSCANG00000029819	UPF1	99	97.196	Colobus_angolensis_palliatus
ENSCGRG00001021067	Upf1	95	97.942	ENSCGRG00000013480	Upf1	99	97.942	Cricetulus_griseus_crigri
ENSCGRG00001021067	Upf1	100	92.466	ENSCSEG00000016159	-	100	92.377	Cynoglossus_semilaevis
ENSCGRG00001021067	Upf1	100	86.380	ENSCSEG00000017239	upf1	100	86.470	Cynoglossus_semilaevis
ENSCGRG00001021067	Upf1	100	92.115	ENSCVAG00000010561	upf1	100	92.025	Cyprinodon_variegatus
ENSCGRG00001021067	Upf1	100	92.659	ENSDARG00000016302	upf1	100	93.107	Danio_rerio
ENSCGRG00001021067	Upf1	96	94.249	ENSDORG00000009984	Upf1	97	93.733	Dipodomys_ordii
ENSCGRG00001021067	Upf1	87	70.290	FBgn0030354	Upf1	84	67.372	Drosophila_melanogaster
ENSCGRG00001021067	Upf1	55	86.601	ENSEBUG00000010069	upf1	96	86.438	Eptatretus_burgeri
ENSCGRG00001021067	Upf1	100	98.835	ENSEASG00005006549	UPF1	100	98.835	Equus_asinus_asinus
ENSCGRG00001021067	Upf1	100	98.835	ENSECAG00000010639	UPF1	100	98.835	Equus_caballus
ENSCGRG00001021067	Upf1	100	90.374	ENSELUG00000020917	upf1	100	90.642	Esox_lucius
ENSCGRG00001021067	Upf1	100	91.095	ENSELUG00000012916	-	100	91.548	Esox_lucius
ENSCGRG00001021067	Upf1	100	97.522	ENSFCAG00000009757	UPF1	100	97.522	Felis_catus
ENSCGRG00001021067	Upf1	96	96.369	ENSFALG00000009312	UPF1	99	96.369	Ficedula_albicollis
ENSCGRG00001021067	Upf1	96	96.488	ENSFDAG00000014816	UPF1	100	98.099	Fukomys_damarensis
ENSCGRG00001021067	Upf1	100	88.711	ENSFHEG00000006428	upf1	100	88.711	Fundulus_heteroclitus
ENSCGRG00001021067	Upf1	85	94.975	ENSFHEG00000016276	-	96	94.975	Fundulus_heteroclitus
ENSCGRG00001021067	Upf1	100	90.949	ENSGMOG00000007541	upf1	100	91.748	Gadus_morhua
ENSCGRG00001021067	Upf1	100	97.138	ENSGALG00000003220	UPF1	100	97.138	Gallus_gallus
ENSCGRG00001021067	Upf1	63	94.509	ENSGAFG00000015443	-	88	92.608	Gambusia_affinis
ENSCGRG00001021067	Upf1	100	91.570	ENSGAFG00000004831	upf1	100	91.928	Gambusia_affinis
ENSCGRG00001021067	Upf1	100	97.127	ENSGAGG00000022217	UPF1	100	97.127	Gopherus_agassizii
ENSCGRG00001021067	Upf1	94	99.040	ENSGGOG00000002608	UPF1	99	99.040	Gorilla_gorilla
ENSCGRG00001021067	Upf1	92	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSCGRG00001021067	Upf1	89	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCGRG00001021067	Upf1	100	97.343	ENSHGLG00000010900	UPF1	100	97.343	Heterocephalus_glaber_female
ENSCGRG00001021067	Upf1	96	94.204	ENSHGLG00100005904	UPF1	99	94.204	Heterocephalus_glaber_male
ENSCGRG00001021067	Upf1	100	91.570	ENSHCOG00000008918	upf1	100	93.424	Hippocampus_comes
ENSCGRG00001021067	Upf1	100	93.286	ENSIPUG00000005108	UPF1	100	93.644	Ictalurus_punctatus
ENSCGRG00001021067	Upf1	100	98.569	ENSSTOG00000009196	UPF1	100	98.569	Ictidomys_tridecemlineatus
ENSCGRG00001021067	Upf1	100	98.310	ENSJJAG00000023151	Upf1	100	98.310	Jaculus_jaculus
ENSCGRG00001021067	Upf1	100	92.473	ENSKMAG00000004962	upf1	100	92.384	Kryptolebias_marmoratus
ENSCGRG00001021067	Upf1	100	89.469	ENSLBEG00000014862	upf1	100	90.531	Labrus_bergylta
ENSCGRG00001021067	Upf1	100	92.211	ENSLBEG00000027848	-	100	92.211	Labrus_bergylta
ENSCGRG00001021067	Upf1	63	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSCGRG00001021067	Upf1	100	94.798	ENSLOCG00000002072	upf1	100	94.798	Lepisosteus_oculatus
ENSCGRG00001021067	Upf1	100	97.168	ENSLAFG00000014963	UPF1	100	97.168	Loxodonta_africana
ENSCGRG00001021067	Upf1	100	97.776	ENSMFAG00000037748	UPF1	100	97.776	Macaca_fascicularis
ENSCGRG00001021067	Upf1	100	97.954	ENSMMUG00000023286	UPF1	100	97.954	Macaca_mulatta
ENSCGRG00001021067	Upf1	100	97.776	ENSMNEG00000000046	UPF1	100	97.776	Macaca_nemestrina
ENSCGRG00001021067	Upf1	94	98.004	ENSMLEG00000028404	UPF1	100	98.004	Mandrillus_leucophaeus
ENSCGRG00001021067	Upf1	100	89.841	ENSMAMG00000006229	upf1	100	90.813	Mastacembelus_armatus
ENSCGRG00001021067	Upf1	100	91.585	ENSMAMG00000006231	-	100	92.032	Mastacembelus_armatus
ENSCGRG00001021067	Upf1	100	92.204	ENSMZEG00005016386	-	100	92.115	Maylandia_zebra
ENSCGRG00001021067	Upf1	100	89.938	ENSMZEG00005003489	upf1	100	91.038	Maylandia_zebra
ENSCGRG00001021067	Upf1	93	96.863	ENSMGAG00000004745	UPF1	100	96.863	Meleagris_gallopavo
ENSCGRG00001021067	Upf1	95	97.310	ENSMAUG00000011398	Upf1	97	97.310	Mesocricetus_auratus
ENSCGRG00001021067	Upf1	100	98.479	ENSMICG00000001659	UPF1	100	98.479	Microcebus_murinus
ENSCGRG00001021067	Upf1	100	98.843	ENSMOCG00000005699	Upf1	100	98.843	Microtus_ochrogaster
ENSCGRG00001021067	Upf1	93	92.226	ENSMMOG00000007537	-	99	92.322	Mola_mola
ENSCGRG00001021067	Upf1	100	90.664	ENSMMOG00000007881	upf1	100	91.031	Mola_mola
ENSCGRG00001021067	Upf1	100	96.381	ENSMODG00000003689	UPF1	100	96.381	Monodelphis_domestica
ENSCGRG00001021067	Upf1	100	90.934	ENSMALG00000000144	upf1	100	91.113	Monopterus_albus
ENSCGRG00001021067	Upf1	100	91.258	ENSMALG00000018100	-	100	91.258	Monopterus_albus
ENSCGRG00001021067	Upf1	100	99.820	MGP_CAROLIEiJ_G0031142	Upf1	100	99.820	Mus_caroli
ENSCGRG00001021067	Upf1	100	99.820	ENSMUSG00000058301	Upf1	100	99.820	Mus_musculus
ENSCGRG00001021067	Upf1	100	99.820	MGP_PahariEiJ_G0021607	Upf1	100	99.820	Mus_pahari
ENSCGRG00001021067	Upf1	100	99.820	MGP_SPRETEiJ_G0032260	Upf1	100	99.820	Mus_spretus
ENSCGRG00001021067	Upf1	100	98.570	ENSMPUG00000015516	UPF1	100	98.570	Mustela_putorius_furo
ENSCGRG00001021067	Upf1	99	98.206	ENSMLUG00000012122	UPF1	99	98.206	Myotis_lucifugus
ENSCGRG00001021067	Upf1	100	98.403	ENSNGAG00000024107	Upf1	100	98.403	Nannospalax_galili
ENSCGRG00001021067	Upf1	100	89.196	ENSNBRG00000000670	upf1	100	89.634	Neolamprologus_brichardi
ENSCGRG00001021067	Upf1	100	88.850	ENSNBRG00000022069	-	100	93.294	Neolamprologus_brichardi
ENSCGRG00001021067	Upf1	94	92.205	ENSNLEG00000006062	UPF1	100	92.205	Nomascus_leucogenys
ENSCGRG00001021067	Upf1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSCGRG00001021067	Upf1	94	91.258	ENSOPRG00000014018	UPF1	100	91.258	Ochotona_princeps
ENSCGRG00001021067	Upf1	100	96.886	ENSODEG00000012426	UPF1	100	96.886	Octodon_degus
ENSCGRG00001021067	Upf1	100	90.203	ENSONIG00000010452	upf1	100	91.304	Oreochromis_niloticus
ENSCGRG00001021067	Upf1	100	92.294	ENSONIG00000012729	-	100	92.204	Oreochromis_niloticus
ENSCGRG00001021067	Upf1	100	96.277	ENSOANG00000004568	UPF1	100	96.277	Ornithorhynchus_anatinus
ENSCGRG00001021067	Upf1	100	92.384	ENSORLG00000008453	upf1	100	92.384	Oryzias_latipes
ENSCGRG00001021067	Upf1	100	92.211	ENSORLG00020014758	upf1	100	92.211	Oryzias_latipes_hni
ENSCGRG00001021067	Upf1	100	92.211	ENSORLG00015010165	upf1	100	92.211	Oryzias_latipes_hsok
ENSCGRG00001021067	Upf1	100	92.473	ENSOMEG00000003665	upf1	100	92.384	Oryzias_melastigma
ENSCGRG00001021067	Upf1	100	98.658	ENSOGAG00000012866	UPF1	100	98.658	Otolemur_garnettii
ENSCGRG00001021067	Upf1	96	95.672	ENSOARG00000010739	UPF1	100	95.672	Ovis_aries
ENSCGRG00001021067	Upf1	95	97.196	ENSPPAG00000043884	UPF1	97	97.196	Pan_paniscus
ENSCGRG00001021067	Upf1	100	97.522	ENSPPRG00000023470	UPF1	100	97.522	Panthera_pardus
ENSCGRG00001021067	Upf1	93	97.212	ENSPTIG00000010159	UPF1	99	97.212	Panthera_tigris_altaica
ENSCGRG00001021067	Upf1	100	97.776	ENSPTRG00000010721	UPF1	100	97.776	Pan_troglodytes
ENSCGRG00001021067	Upf1	100	97.776	ENSPANG00000008847	UPF1	100	97.776	Papio_anubis
ENSCGRG00001021067	Upf1	91	94.804	ENSPKIG00000006069	upf1	97	94.706	Paramormyrops_kingsleyae
ENSCGRG00001021067	Upf1	69	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSCGRG00001021067	Upf1	100	89.276	ENSPMGG00000017327	upf1	100	89.384	Periophthalmus_magnuspinnatus
ENSCGRG00001021067	Upf1	100	99.021	ENSPEMG00000001085	Upf1	100	99.021	Peromyscus_maniculatus_bairdii
ENSCGRG00001021067	Upf1	100	87.388	ENSPMAG00000001206	upf1	100	86.821	Petromyzon_marinus
ENSCGRG00001021067	Upf1	100	97.943	ENSPCIG00000006156	UPF1	100	97.943	Phascolarctos_cinereus
ENSCGRG00001021067	Upf1	100	89.422	ENSPLAG00000018155	-	100	89.333	Poecilia_latipinna
ENSCGRG00001021067	Upf1	100	91.659	ENSPLAG00000016232	-	100	92.018	Poecilia_latipinna
ENSCGRG00001021067	Upf1	100	91.577	ENSPMEG00000016319	-	100	91.935	Poecilia_mexicana
ENSCGRG00001021067	Upf1	100	89.893	ENSPMEG00000011443	-	100	89.803	Poecilia_mexicana
ENSCGRG00001021067	Upf1	100	91.480	ENSPREG00000011247	-	100	91.839	Poecilia_reticulata
ENSCGRG00001021067	Upf1	100	89.716	ENSPREG00000009940	upf1	100	89.716	Poecilia_reticulata
ENSCGRG00001021067	Upf1	100	92.648	ENSPPYG00000009752	UPF1	100	92.648	Pongo_abelii
ENSCGRG00001021067	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCGRG00001021067	Upf1	100	97.954	ENSPCOG00000023813	UPF1	100	97.954	Propithecus_coquereli
ENSCGRG00001021067	Upf1	70	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCGRG00001021067	Upf1	100	89.938	ENSPNYG00000003694	upf1	100	91.038	Pundamilia_nyererei
ENSCGRG00001021067	Upf1	100	92.204	ENSPNYG00000016731	-	100	92.115	Pundamilia_nyererei
ENSCGRG00001021067	Upf1	100	92.838	ENSPNAG00000025614	upf1	100	93.286	Pygocentrus_nattereri
ENSCGRG00001021067	Upf1	100	99.910	ENSRNOG00000020134	Upf1	100	99.910	Rattus_norvegicus
ENSCGRG00001021067	Upf1	95	94.860	ENSRBIG00000013894	UPF1	98	98.795	Rhinopithecus_bieti
ENSCGRG00001021067	Upf1	95	97.196	ENSRROG00000040935	UPF1	98	98.795	Rhinopithecus_roxellana
ENSCGRG00001021067	Upf1	77	55.322	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSCGRG00001021067	Upf1	96	96.293	ENSSBOG00000023632	UPF1	99	96.293	Saimiri_boliviensis_boliviensis
ENSCGRG00001021067	Upf1	93	97.246	ENSSHAG00000010499	UPF1	100	97.246	Sarcophilus_harrisii
ENSCGRG00001021067	Upf1	100	94.892	ENSSFOG00015021095	upf1	99	96.830	Scleropages_formosus
ENSCGRG00001021067	Upf1	100	89.115	ENSSMAG00000005055	upf1	100	89.832	Scophthalmus_maximus
ENSCGRG00001021067	Upf1	100	92.301	ENSSMAG00000021018	-	100	92.301	Scophthalmus_maximus
ENSCGRG00001021067	Upf1	100	90.106	ENSSDUG00000013320	upf1	100	90.901	Seriola_dumerili
ENSCGRG00001021067	Upf1	100	92.569	ENSSDUG00000009629	-	100	92.569	Seriola_dumerili
ENSCGRG00001021067	Upf1	100	90.909	ENSSLDG00000020868	upf1	100	91.192	Seriola_lalandi_dorsalis
ENSCGRG00001021067	Upf1	100	92.569	ENSSLDG00000006878	-	100	92.569	Seriola_lalandi_dorsalis
ENSCGRG00001021067	Upf1	100	96.948	ENSSPUG00000010538	UPF1	100	96.948	Sphenodon_punctatus
ENSCGRG00001021067	Upf1	100	92.556	ENSSPAG00000011521	-	100	92.466	Stegastes_partitus
ENSCGRG00001021067	Upf1	100	89.327	ENSSPAG00000000003	upf1	100	89.366	Stegastes_partitus
ENSCGRG00001021067	Upf1	100	98.566	ENSSSCG00000039301	UPF1	100	98.566	Sus_scrofa
ENSCGRG00001021067	Upf1	84	89.468	ENSTGUG00000001057	UPF1	100	95.273	Taeniopygia_guttata
ENSCGRG00001021067	Upf1	100	91.480	ENSTRUG00000005131	-	100	91.480	Takifugu_rubripes
ENSCGRG00001021067	Upf1	100	90.510	ENSTRUG00000000150	upf1	100	90.485	Takifugu_rubripes
ENSCGRG00001021067	Upf1	100	94.534	ENSTTRG00000011544	UPF1	100	94.355	Tursiops_truncatus
ENSCGRG00001021067	Upf1	100	98.481	ENSUAMG00000007093	UPF1	100	98.481	Ursus_americanus
ENSCGRG00001021067	Upf1	95	97.923	ENSUMAG00000006652	UPF1	99	99.170	Ursus_maritimus
ENSCGRG00001021067	Upf1	100	98.570	ENSVVUG00000007797	UPF1	100	98.570	Vulpes_vulpes
ENSCGRG00001021067	Upf1	100	81.850	ENSXETG00000013602	upf1	100	81.762	Xenopus_tropicalis
ENSCGRG00001021067	Upf1	97	89.703	ENSXCOG00000015275	-	96	89.610	Xiphophorus_couchianus
ENSCGRG00001021067	Upf1	93	93.695	ENSXCOG00000005764	-	100	94.180	Xiphophorus_couchianus
ENSCGRG00001021067	Upf1	100	89.955	ENSXMAG00000001703	-	100	89.865	Xiphophorus_maculatus
ENSCGRG00001021067	Upf1	100	91.398	ENSXMAG00000002540	-	100	91.756	Xiphophorus_maculatus