EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001022686 (Gene tree)
Gene ID: -
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 69967 bases
Position: chrscaffold_12:50882299-50952265
Accession: 2443265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001024941	Ago_hook	PF10427.9	6.9e-23	1	1
ENSCGRP00001024947	Ago_hook	PF10427.9	3e-22	1	1
ENSCGRP00001024941	RRM_1	PF00076.22	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001029187	-	5667	-	ENSCGRP00001024941	1888 (aa)	-	UPI00022F3F43
ENSCGRT00001029193	-	5037	-	ENSCGRP00001024947	1678 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001022686's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001022686's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001022686	Tnrc6c	99	41.381	ENSCGRG00001015021	Tnrc6a	99	40.891
ENSCGRG00001022686	Tnrc6c	95	34.776	ENSCGRG00001020166	Tnrc6b	94	33.978

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001022686	Tnrc6c	100	88.398	ENSG00000078687	TNRC6C	100	89.576	Homo_sapiens
ENSCGRG00001022686	Tnrc6c	80	53.742	ENSAPOG00000019749	tnrc6c1	98	49.786	Acanthochromis_polyacanthus
ENSCGRG00001022686	Tnrc6c	100	83.600	ENSAMEG00000013756	TNRC6C	99	84.308	Ailuropoda_melanoleuca
ENSCGRG00001022686	Tnrc6c	94	47.227	ENSACIG00000008075	tnrc6c1	98	52.123	Amphilophus_citrinellus
ENSCGRG00001022686	Tnrc6c	75	66.935	ENSAOCG00000023968	tnrc6c1	99	48.819	Amphiprion_ocellaris
ENSCGRG00001022686	Tnrc6c	80	53.315	ENSAPEG00000009020	tnrc6c1	99	49.076	Amphiprion_percula
ENSCGRG00001022686	Tnrc6c	100	80.662	ENSAPLG00000005456	TNRC6C	100	80.982	Anas_platyrhynchos
ENSCGRG00001022686	Tnrc6c	100	81.624	ENSACAG00000016198	TNRC6C	98	81.406	Anolis_carolinensis
ENSCGRG00001022686	Tnrc6c	100	87.920	ENSANAG00000021554	TNRC6C	100	89.334	Aotus_nancymaae
ENSCGRG00001022686	Tnrc6c	100	46.534	ENSACLG00000000424	tnrc6c1	99	46.400	Astatotilapia_calliptera
ENSCGRG00001022686	Tnrc6c	100	85.571	ENSBTAG00000018658	TNRC6C	100	86.808	Bos_taurus
ENSCGRG00001022686	Tnrc6c	100	88.156	ENSCJAG00000019431	TNRC6C	100	89.275	Callithrix_jacchus
ENSCGRG00001022686	Tnrc6c	100	85.706	ENSCAFG00000005224	TNRC6C	99	86.056	Canis_familiaris
ENSCGRG00001022686	Tnrc6c	100	88.267	ENSCAFG00020006661	TNRC6C	100	88.128	Canis_lupus_dingo
ENSCGRG00001022686	Tnrc6c	100	85.074	ENSCHIG00000026004	TNRC6C	100	85.681	Capra_hircus
ENSCGRG00001022686	Tnrc6c	100	87.536	ENSTSYG00000005403	TNRC6C	100	88.632	Carlito_syrichta
ENSCGRG00001022686	Tnrc6c	100	84.506	ENSCAPG00000007307	TNRC6C	99	84.118	Cavia_aperea
ENSCGRG00001022686	Tnrc6c	100	87.662	ENSCPOG00000000467	TNRC6C	100	88.188	Cavia_porcellus
ENSCGRG00001022686	Tnrc6c	100	88.568	ENSCCAG00000030524	TNRC6C	100	89.688	Cebus_capucinus
ENSCGRG00001022686	Tnrc6c	100	88.627	ENSCATG00000033135	TNRC6C	100	89.806	Cercocebus_atys
ENSCGRG00001022686	Tnrc6c	100	89.669	ENSCLAG00000011139	TNRC6C	99	89.793	Chinchilla_lanigera
ENSCGRG00001022686	Tnrc6c	100	86.728	ENSCSAG00000005167	TNRC6C	99	87.240	Chlorocebus_sabaeus
ENSCGRG00001022686	Tnrc6c	71	88.976	ENSCHOG00000000088	TNRC6C	75	88.235	Choloepus_hoffmanni
ENSCGRG00001022686	Tnrc6c	100	83.922	ENSCPBG00000027960	TNRC6C	100	84.806	Chrysemys_picta_bellii
ENSCGRG00001022686	Tnrc6c	100	88.332	ENSCANG00000041771	TNRC6C	100	89.511	Colobus_angolensis_palliatus
ENSCGRG00001022686	Tnrc6c	100	100.000	ENSCGRG00000018041	Tnrc6c	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001022686	Tnrc6c	80	50.070	ENSCSEG00000012744	tnrc6c1	98	47.508	Cynoglossus_semilaevis
ENSCGRG00001022686	Tnrc6c	99	51.561	ENSDARG00000076847	tnrc6c1	99	51.805	Danio_rerio
ENSCGRG00001022686	Tnrc6c	100	84.456	ENSDNOG00000003247	TNRC6C	99	83.933	Dasypus_novemcinctus
ENSCGRG00001022686	Tnrc6c	100	86.119	ENSDORG00000004558	Tnrc6c	100	87.064	Dipodomys_ordii
ENSCGRG00001022686	Tnrc6c	90	79.310	ENSETEG00000005527	TNRC6C	90	80.656	Echinops_telfairi
ENSCGRG00001022686	Tnrc6c	100	87.375	ENSEASG00005004799	TNRC6C	100	88.496	Equus_asinus_asinus
ENSCGRG00001022686	Tnrc6c	100	87.375	ENSECAG00000012486	TNRC6C	99	87.746	Equus_caballus
ENSCGRG00001022686	Tnrc6c	96	87.800	ENSEEUG00000010008	TNRC6C	96	87.140	Erinaceus_europaeus
ENSCGRG00001022686	Tnrc6c	100	85.714	ENSFCAG00000028358	TNRC6C	100	87.125	Felis_catus
ENSCGRG00001022686	Tnrc6c	100	80.823	ENSFALG00000000848	TNRC6C	100	81.366	Ficedula_albicollis
ENSCGRG00001022686	Tnrc6c	100	89.020	ENSFDAG00000010368	TNRC6C	100	89.851	Fukomys_damarensis
ENSCGRG00001022686	Tnrc6c	94	45.985	ENSFHEG00000002936	tnrc6c1	99	47.247	Fundulus_heteroclitus
ENSCGRG00001022686	Tnrc6c	100	84.661	ENSGALG00000001725	TNRC6C	100	85.192	Gallus_gallus
ENSCGRG00001022686	Tnrc6c	100	48.087	ENSGAFG00000019019	tnrc6c1	99	48.099	Gambusia_affinis
ENSCGRG00001022686	Tnrc6c	91	49.937	ENSGACG00000012320	tnrc6c1	99	47.888	Gasterosteus_aculeatus
ENSCGRG00001022686	Tnrc6c	100	83.284	ENSGAGG00000022043	TNRC6C	99	83.831	Gopherus_agassizii
ENSCGRG00001022686	Tnrc6c	100	87.986	ENSGGOG00000011304	TNRC6C	100	88.987	Gorilla_gorilla
ENSCGRG00001022686	Tnrc6c	99	50.000	ENSHBUG00000010846	tnrc6c1	99	46.512	Haplochromis_burtoni
ENSCGRG00001022686	Tnrc6c	100	89.256	ENSHGLG00000004809	TNRC6C	99	89.291	Heterocephalus_glaber_female
ENSCGRG00001022686	Tnrc6c	100	89.020	ENSHGLG00100012597	TNRC6C	99	89.877	Heterocephalus_glaber_male
ENSCGRG00001022686	Tnrc6c	100	51.984	ENSIPUG00000000818	tnrc6c1	98	52.136	Ictalurus_punctatus
ENSCGRG00001022686	Tnrc6c	100	89.210	ENSSTOG00000009101	TNRC6C	100	89.748	Ictidomys_tridecemlineatus
ENSCGRG00001022686	Tnrc6c	100	90.118	ENSJJAG00000017055	Tnrc6c	99	89.516	Jaculus_jaculus
ENSCGRG00001022686	Tnrc6c	99	46.740	ENSKMAG00000021023	tnrc6c1	97	50.801	Kryptolebias_marmoratus
ENSCGRG00001022686	Tnrc6c	100	73.746	ENSLACG00000015283	TNRC6C	100	74.078	Latimeria_chalumnae
ENSCGRG00001022686	Tnrc6c	99	56.028	ENSLOCG00000013377	tnrc6c1	99	56.375	Lepisosteus_oculatus
ENSCGRG00001022686	Tnrc6c	100	88.371	ENSLAFG00000011122	TNRC6C	99	88.410	Loxodonta_africana
ENSCGRG00001022686	Tnrc6c	100	88.686	ENSMFAG00000043943	TNRC6C	100	89.864	Macaca_fascicularis
ENSCGRG00001022686	Tnrc6c	100	88.686	ENSMMUG00000011924	TNRC6C	100	89.864	Macaca_mulatta
ENSCGRG00001022686	Tnrc6c	100	88.627	ENSMNEG00000030405	TNRC6C	100	89.806	Macaca_nemestrina
ENSCGRG00001022686	Tnrc6c	100	88.686	ENSMLEG00000033436	TNRC6C	100	89.864	Mandrillus_leucophaeus
ENSCGRG00001022686	Tnrc6c	95	52.573	ENSMAMG00000023613	tnrc6c1	99	48.428	Mastacembelus_armatus
ENSCGRG00001022686	Tnrc6c	99	49.863	ENSMZEG00005010920	tnrc6c1	99	46.400	Maylandia_zebra
ENSCGRG00001022686	Tnrc6c	100	75.072	ENSMGAG00000003906	TNRC6C	100	75.909	Meleagris_gallopavo
ENSCGRG00001022686	Tnrc6c	100	94.083	ENSMAUG00000021618	Tnrc6c	100	95.089	Mesocricetus_auratus
ENSCGRG00001022686	Tnrc6c	100	89.452	ENSMICG00000003952	TNRC6C	100	90.572	Microcebus_murinus
ENSCGRG00001022686	Tnrc6c	100	96.000	ENSMOCG00000015879	Tnrc6c	100	96.092	Microtus_ochrogaster
ENSCGRG00001022686	Tnrc6c	78	53.907	ENSMMOG00000005203	tnrc6c1	100	49.972	Mola_mola
ENSCGRG00001022686	Tnrc6c	100	84.198	ENSMODG00000001785	TNRC6C	99	83.484	Monodelphis_domestica
ENSCGRG00001022686	Tnrc6c	100	94.911	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	95.172	Mus_caroli
ENSCGRG00001022686	Tnrc6c	100	94.556	ENSMUSG00000025571	Tnrc6c	100	94.828	Mus_musculus
ENSCGRG00001022686	Tnrc6c	100	94.675	MGP_PahariEiJ_G0018593	Tnrc6c	100	95.000	Mus_pahari
ENSCGRG00001022686	Tnrc6c	100	94.615	MGP_SPRETEiJ_G0018309	Tnrc6c	100	94.885	Mus_spretus
ENSCGRG00001022686	Tnrc6c	100	83.112	ENSMPUG00000013348	TNRC6C	98	84.079	Mustela_putorius_furo
ENSCGRG00001022686	Tnrc6c	100	80.401	ENSMLUG00000014431	TNRC6C	98	80.062	Myotis_lucifugus
ENSCGRG00001022686	Tnrc6c	100	92.130	ENSNGAG00000012203	Tnrc6c	99	92.488	Nannospalax_galili
ENSCGRG00001022686	Tnrc6c	100	47.098	ENSNBRG00000005344	tnrc6c1	99	46.854	Neolamprologus_brichardi
ENSCGRG00001022686	Tnrc6c	100	84.593	ENSNLEG00000000047	TNRC6C	99	85.154	Nomascus_leucogenys
ENSCGRG00001022686	Tnrc6c	97	77.308	ENSMEUG00000005104	TNRC6C	100	78.032	Notamacropus_eugenii
ENSCGRG00001022686	Tnrc6c	100	89.315	ENSODEG00000012499	TNRC6C	100	89.965	Octodon_degus
ENSCGRG00001022686	Tnrc6c	94	49.635	ENSONIG00000002210	tnrc6c1	96	53.702	Oreochromis_niloticus
ENSCGRG00001022686	Tnrc6c	99	62.998	ENSOANG00000009758	-	100	62.009	Ornithorhynchus_anatinus
ENSCGRG00001022686	Tnrc6c	84	79.059	ENSOCUG00000006122	TNRC6C	95	75.605	Oryctolagus_cuniculus
ENSCGRG00001022686	Tnrc6c	93	46.825	ENSORLG00000009837	tnrc6c1	100	67.658	Oryzias_latipes
ENSCGRG00001022686	Tnrc6c	91	48.652	ENSORLG00020016510	tnrc6c1	100	48.124	Oryzias_latipes_hni
ENSCGRG00001022686	Tnrc6c	76	42.150	ENSORLG00015000171	tnrc6c1	98	43.347	Oryzias_latipes_hsok
ENSCGRG00001022686	Tnrc6c	93	47.700	ENSOMEG00000000357	tnrc6c1	99	48.029	Oryzias_melastigma
ENSCGRG00001022686	Tnrc6c	100	86.844	ENSOGAG00000007197	TNRC6C	100	87.940	Otolemur_garnettii
ENSCGRG00001022686	Tnrc6c	96	80.688	ENSOARG00000006041	TNRC6C	98	81.345	Ovis_aries
ENSCGRG00001022686	Tnrc6c	100	88.391	ENSPPAG00000027160	TNRC6C	100	89.511	Pan_paniscus
ENSCGRG00001022686	Tnrc6c	100	85.773	ENSPPRG00000018881	TNRC6C	100	87.184	Panthera_pardus
ENSCGRG00001022686	Tnrc6c	90	84.279	ENSPTIG00000008791	TNRC6C	69	87.464	Panthera_tigris_altaica
ENSCGRG00001022686	Tnrc6c	100	88.391	ENSPTRG00000009699	TNRC6C	100	89.511	Pan_troglodytes
ENSCGRG00001022686	Tnrc6c	100	88.843	ENSPANG00000019994	TNRC6C	100	90.024	Papio_anubis
ENSCGRG00001022686	Tnrc6c	96	50.837	ENSPKIG00000005428	tnrc6c1	98	51.171	Paramormyrops_kingsleyae
ENSCGRG00001022686	Tnrc6c	100	82.214	ENSPSIG00000018069	TNRC6C	100	82.780	Pelodiscus_sinensis
ENSCGRG00001022686	Tnrc6c	62	56.550	ENSPMGG00000022911	tnrc6c1	97	63.968	Periophthalmus_magnuspinnatus
ENSCGRG00001022686	Tnrc6c	100	95.325	ENSPEMG00000009785	Tnrc6c	99	95.365	Peromyscus_maniculatus_bairdii
ENSCGRG00001022686	Tnrc6c	57	81.977	ENSPCIG00000017421	-	99	81.977	Phascolarctos_cinereus
ENSCGRG00001022686	Tnrc6c	100	48.337	ENSPFOG00000012560	tnrc6c1	98	53.664	Poecilia_formosa
ENSCGRG00001022686	Tnrc6c	100	48.392	ENSPLAG00000021055	tnrc6c1	97	49.743	Poecilia_latipinna
ENSCGRG00001022686	Tnrc6c	100	86.613	ENSPPYG00000008679	TNRC6C	98	87.240	Pongo_abelii
ENSCGRG00001022686	Tnrc6c	93	88.389	ENSPCAG00000012510	TNRC6C	90	92.180	Procavia_capensis
ENSCGRG00001022686	Tnrc6c	100	90.041	ENSPCOG00000021451	TNRC6C	100	91.220	Propithecus_coquereli
ENSCGRG00001022686	Tnrc6c	96	88.136	ENSPVAG00000002008	TNRC6C	95	88.136	Pteropus_vampyrus
ENSCGRG00001022686	Tnrc6c	100	48.673	ENSPNYG00000014477	tnrc6c1	99	46.053	Pundamilia_nyererei
ENSCGRG00001022686	Tnrc6c	100	93.381	ENSRNOG00000022395	Tnrc6c	100	94.563	Rattus_norvegicus
ENSCGRG00001022686	Tnrc6c	100	88.568	ENSRBIG00000027777	TNRC6C	100	89.747	Rhinopithecus_bieti
ENSCGRG00001022686	Tnrc6c	100	88.627	ENSRROG00000042912	TNRC6C	100	89.806	Rhinopithecus_roxellana
ENSCGRG00001022686	Tnrc6c	100	87.030	ENSSBOG00000023981	TNRC6C	100	87.305	Saimiri_boliviensis_boliviensis
ENSCGRG00001022686	Tnrc6c	53	82.940	ENSSHAG00000018330	-	100	84.335	Sarcophilus_harrisii
ENSCGRG00001022686	Tnrc6c	61	55.839	ENSSFOG00015004735	-	99	61.780	Scleropages_formosus
ENSCGRG00001022686	Tnrc6c	78	57.214	ENSSFOG00015006475	tnrc6c1	99	51.191	Scleropages_formosus
ENSCGRG00001022686	Tnrc6c	100	47.208	ENSSMAG00000012761	tnrc6c1	99	50.260	Scophthalmus_maximus
ENSCGRG00001022686	Tnrc6c	94	50.182	ENSSDUG00000002366	tnrc6c1	98	50.108	Seriola_dumerili
ENSCGRG00001022686	Tnrc6c	94	48.615	ENSSLDG00000025613	tnrc6c1	97	50.057	Seriola_lalandi_dorsalis
ENSCGRG00001022686	Tnrc6c	91	88.793	ENSSARG00000006816	TNRC6C	91	88.546	Sorex_araneus
ENSCGRG00001022686	Tnrc6c	82	80.625	ENSSPUG00000007341	TNRC6C	98	81.389	Sphenodon_punctatus
ENSCGRG00001022686	Tnrc6c	78	51.980	ENSSPAG00000014977	tnrc6c1	98	47.987	Stegastes_partitus
ENSCGRG00001022686	Tnrc6c	100	82.586	ENSSSCG00000034373	TNRC6C	100	83.894	Sus_scrofa
ENSCGRG00001022686	Tnrc6c	100	84.697	ENSTGUG00000007733	TNRC6C	100	85.134	Taeniopygia_guttata
ENSCGRG00001022686	Tnrc6c	78	52.713	ENSTRUG00000011685	tnrc6c1	100	48.840	Takifugu_rubripes
ENSCGRG00001022686	Tnrc6c	95	53.774	ENSTNIG00000005273	tnrc6c1	100	59.748	Tetraodon_nigroviridis
ENSCGRG00001022686	Tnrc6c	62	88.546	ENSTBEG00000005046	TNRC6C	99	79.895	Tupaia_belangeri
ENSCGRG00001022686	Tnrc6c	100	87.463	ENSTTRG00000010828	TNRC6C	99	88.107	Tursiops_truncatus
ENSCGRG00001022686	Tnrc6c	100	86.136	ENSUMAG00000013614	TNRC6C	99	86.231	Ursus_maritimus
ENSCGRG00001022686	Tnrc6c	52	78.555	ENSVPAG00000006765	-	99	78.774	Vicugna_pacos
ENSCGRG00001022686	Tnrc6c	100	87.913	ENSVVUG00000015268	TNRC6C	100	89.033	Vulpes_vulpes
ENSCGRG00001022686	Tnrc6c	100	72.600	ENSXETG00000019470	tnrc6c	100	72.743	Xenopus_tropicalis
ENSCGRG00001022686	Tnrc6c	100	49.371	ENSXMAG00000025971	tnrc6c1	99	50.263	Xiphophorus_maculatus