EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001023686 (Gene tree)
Gene ID: -
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 11423 bases
Position: chrscaffold_22:27436641-27448063
Accession: 1919049
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001026339	PPR	PF01535.20	2.4e-16	1	2
ENSCGRP00001026339	PPR	PF01535.20	2.4e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001030585	-	2103	-	ENSCGRP00001026339	700 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001023686's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001023686's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001023686	Ptcd1	100	73.400	ENSG00000106246	PTCD1	100	73.400	Homo_sapiens
ENSCGRG00001023686	Ptcd1	100	73.400	ENSG00000248919	ATP5MF-PTCD1	93	73.400	Homo_sapiens
ENSCGRG00001023686	Ptcd1	86	45.395	ENSAPOG00000010679	ptcd1	91	45.395	Acanthochromis_polyacanthus
ENSCGRG00001023686	Ptcd1	100	75.955	ENSAMEG00000006224	-	93	75.955	Ailuropoda_melanoleuca
ENSCGRG00001023686	Ptcd1	93	48.182	ENSACIG00000017861	ptcd1	93	47.576	Amphilophus_citrinellus
ENSCGRG00001023686	Ptcd1	92	46.533	ENSAOCG00000020741	-	89	46.296	Amphiprion_ocellaris
ENSCGRG00001023686	Ptcd1	86	45.990	ENSAOCG00000022617	ptcd1	89	45.738	Amphiprion_ocellaris
ENSCGRG00001023686	Ptcd1	92	46.379	ENSAPEG00000022632	ptcd1	89	46.142	Amphiprion_percula
ENSCGRG00001023686	Ptcd1	92	47.612	ENSATEG00000007016	ptcd1	88	47.773	Anabas_testudineus
ENSCGRG00001023686	Ptcd1	84	60.134	ENSAPLG00000006862	-	95	59.446	Anas_platyrhynchos
ENSCGRG00001023686	Ptcd1	99	55.807	ENSACAG00000012871	-	92	55.807	Anolis_carolinensis
ENSCGRG00001023686	Ptcd1	97	73.362	ENSANAG00000035790	-	99	73.362	Aotus_nancymaae
ENSCGRG00001023686	Ptcd1	85	49.505	ENSACLG00000002824	ptcd1	82	49.010	Astatotilapia_calliptera
ENSCGRG00001023686	Ptcd1	86	47.452	ENSAMXG00000037292	ptcd1	88	47.452	Astyanax_mexicanus
ENSCGRG00001023686	Ptcd1	99	73.181	ENSBTAG00000020440	-	87	73.609	Bos_taurus
ENSCGRG00001023686	Ptcd1	100	72.766	ENSCJAG00000015815	-	100	72.766	Callithrix_jacchus
ENSCGRG00001023686	Ptcd1	99	75.466	ENSCAFG00000015055	-	92	75.250	Canis_familiaris
ENSCGRG00001023686	Ptcd1	99	75.466	ENSCAFG00020014480	-	92	75.466	Canis_lupus_dingo
ENSCGRG00001023686	Ptcd1	99	73.466	ENSCHIG00000027000	-	99	73.894	Capra_hircus
ENSCGRG00001023686	Ptcd1	100	74.965	ENSTSYG00000029495	-	100	75.813	Carlito_syrichta
ENSCGRG00001023686	Ptcd1	93	75.114	ENSCAPG00000014660	-	100	75.114	Cavia_aperea
ENSCGRG00001023686	Ptcd1	100	73.975	ENSCPOG00000001780	-	100	73.975	Cavia_porcellus
ENSCGRG00001023686	Ptcd1	99	72.688	ENSCCAG00000034025	-	99	72.688	Cebus_capucinus
ENSCGRG00001023686	Ptcd1	99	74.355	ENSCATG00000040859	-	99	74.355	Cercocebus_atys
ENSCGRG00001023686	Ptcd1	98	75.648	ENSCLAG00000006354	-	99	75.107	Chinchilla_lanigera
ENSCGRG00001023686	Ptcd1	91	74.379	ENSCSAG00000017794	-	95	74.379	Chlorocebus_sabaeus
ENSCGRG00001023686	Ptcd1	88	58.642	ENSCPBG00000020866	-	87	58.308	Chrysemys_picta_bellii
ENSCGRG00001023686	Ptcd1	83	30.872	ENSCING00000007717	-	98	31.208	Ciona_intestinalis
ENSCGRG00001023686	Ptcd1	99	73.381	ENSCANG00000023441	-	99	73.381	Colobus_angolensis_palliatus
ENSCGRG00001023686	Ptcd1	99	99.006	ENSCGRG00000015031	Ptcd1	100	99.006	Cricetulus_griseus_crigri
ENSCGRG00001023686	Ptcd1	87	46.154	ENSCSEG00000002378	ptcd1	85	46.795	Cynoglossus_semilaevis
ENSCGRG00001023686	Ptcd1	88	46.388	ENSCVAG00000015826	ptcd1	86	46.228	Cyprinodon_variegatus
ENSCGRG00001023686	Ptcd1	85	47.826	ENSCVAG00000003621	ptcd1	88	46.932	Cyprinodon_variegatus
ENSCGRG00001023686	Ptcd1	86	49.273	ENSDARG00000076176	ptcd1	88	49.111	Danio_rerio
ENSCGRG00001023686	Ptcd1	100	71.730	ENSDNOG00000009957	-	100	72.152	Dasypus_novemcinctus
ENSCGRG00001023686	Ptcd1	99	74.392	ENSDORG00000000740	Ptcd1	100	74.678	Dipodomys_ordii
ENSCGRG00001023686	Ptcd1	91	39.714	ENSEBUG00000014515	ptcd1	97	41.696	Eptatretus_burgeri
ENSCGRG00001023686	Ptcd1	100	75.702	ENSEASG00005002480	-	100	75.702	Equus_asinus_asinus
ENSCGRG00001023686	Ptcd1	100	76.124	ENSECAG00000016617	-	100	76.124	Equus_caballus
ENSCGRG00001023686	Ptcd1	85	46.955	ENSELUG00000016517	ptcd1	83	46.955	Esox_lucius
ENSCGRG00001023686	Ptcd1	100	75.847	ENSFCAG00000015069	-	100	75.847	Felis_catus
ENSCGRG00001023686	Ptcd1	86	60.413	ENSFALG00000013803	-	89	59.480	Ficedula_albicollis
ENSCGRG00001023686	Ptcd1	100	73.438	ENSFDAG00000006393	-	100	73.438	Fukomys_damarensis
ENSCGRG00001023686	Ptcd1	76	47.290	ENSFHEG00000012491	ptcd1	89	47.290	Fundulus_heteroclitus
ENSCGRG00001023686	Ptcd1	83	46.404	ENSGMOG00000007639	ptcd1	93	46.747	Gadus_morhua
ENSCGRG00001023686	Ptcd1	87	57.300	ENSGALG00000004711	-	93	55.409	Gallus_gallus
ENSCGRG00001023686	Ptcd1	83	48.316	ENSGAFG00000013175	ptcd1	82	47.811	Gambusia_affinis
ENSCGRG00001023686	Ptcd1	84	49.161	ENSGACG00000016607	ptcd1	89	48.833	Gasterosteus_aculeatus
ENSCGRG00001023686	Ptcd1	81	60.348	ENSGAGG00000021832	-	85	60.522	Gopherus_agassizii
ENSCGRG00001023686	Ptcd1	99	73.745	ENSGGOG00000015123	-	99	73.745	Gorilla_gorilla
ENSCGRG00001023686	Ptcd1	85	48.926	ENSHBUG00000018275	ptcd1	82	48.430	Haplochromis_burtoni
ENSCGRG00001023686	Ptcd1	100	75.177	ENSHGLG00000017621	-	100	75.177	Heterocephalus_glaber_female
ENSCGRG00001023686	Ptcd1	100	75.177	ENSHGLG00100007218	-	100	75.177	Heterocephalus_glaber_male
ENSCGRG00001023686	Ptcd1	83	47.341	ENSHCOG00000010784	ptcd1	82	47.260	Hippocampus_comes
ENSCGRG00001023686	Ptcd1	99	76.028	ENSSTOG00000001682	-	99	76.028	Ictidomys_tridecemlineatus
ENSCGRG00001023686	Ptcd1	100	77.557	ENSJJAG00000000319	Ptcd1	100	77.273	Jaculus_jaculus
ENSCGRG00001023686	Ptcd1	89	47.077	ENSKMAG00000008708	ptcd1	87	47.077	Kryptolebias_marmoratus
ENSCGRG00001023686	Ptcd1	88	47.484	ENSLBEG00000008061	ptcd1	86	47.484	Labrus_bergylta
ENSCGRG00001023686	Ptcd1	88	57.643	ENSLACG00000011172	ptcd1	87	57.643	Latimeria_chalumnae
ENSCGRG00001023686	Ptcd1	93	51.912	ENSLOCG00000004833	ptcd1	96	52.389	Lepisosteus_oculatus
ENSCGRG00001023686	Ptcd1	100	68.908	ENSLAFG00000002588	-	100	69.748	Loxodonta_africana
ENSCGRG00001023686	Ptcd1	99	74.355	ENSMFAG00000041324	-	99	74.355	Macaca_fascicularis
ENSCGRG00001023686	Ptcd1	99	74.212	ENSMMUG00000030408	-	99	74.212	Macaca_mulatta
ENSCGRG00001023686	Ptcd1	99	74.212	ENSMNEG00000043786	-	99	74.212	Macaca_nemestrina
ENSCGRG00001023686	Ptcd1	99	55.158	ENSMLEG00000031179	-	99	57.163	Mandrillus_leucophaeus
ENSCGRG00001023686	Ptcd1	93	47.130	ENSMAMG00000007623	ptcd1	90	46.349	Mastacembelus_armatus
ENSCGRG00001023686	Ptcd1	85	49.505	ENSMZEG00005012722	ptcd1	82	49.010	Maylandia_zebra
ENSCGRG00001023686	Ptcd1	99	54.888	ENSMGAG00000004211	-	93	54.888	Meleagris_gallopavo
ENSCGRG00001023686	Ptcd1	99	74.821	ENSMICG00000017428	-	99	75.429	Microcebus_murinus
ENSCGRG00001023686	Ptcd1	86	47.377	ENSMMOG00000020243	ptcd1	91	47.213	Mola_mola
ENSCGRG00001023686	Ptcd1	97	59.254	ENSMODG00000001350	-	98	59.254	Monodelphis_domestica
ENSCGRG00001023686	Ptcd1	85	48.918	ENSMALG00000018442	ptcd1	81	48.918	Monopterus_albus
ENSCGRG00001023686	Ptcd1	99	83.714	MGP_CAROLIEiJ_G0028011	Ptcd1	99	83.714	Mus_caroli
ENSCGRG00001023686	Ptcd1	99	83.143	ENSMUSG00000029624	Ptcd1	99	83.143	Mus_musculus
ENSCGRG00001023686	Ptcd1	100	83.738	MGP_PahariEiJ_G0024580	Ptcd1	100	83.738	Mus_pahari
ENSCGRG00001023686	Ptcd1	99	83.714	MGP_SPRETEiJ_G0029012	Ptcd1	99	83.714	Mus_spretus
ENSCGRG00001023686	Ptcd1	100	75.248	ENSMPUG00000016518	-	100	75.672	Mustela_putorius_furo
ENSCGRG00001023686	Ptcd1	99	76.096	ENSMLUG00000010994	-	94	76.379	Myotis_lucifugus
ENSCGRG00001023686	Ptcd1	87	48.864	ENSNBRG00000010079	ptcd1	87	48.460	Neolamprologus_brichardi
ENSCGRG00001023686	Ptcd1	81	74.341	ENSNLEG00000011060	-	94	74.341	Nomascus_leucogenys
ENSCGRG00001023686	Ptcd1	97	60.317	ENSMEUG00000006930	-	99	60.317	Notamacropus_eugenii
ENSCGRG00001023686	Ptcd1	89	73.176	ENSOPRG00000013647	-	89	73.176	Ochotona_princeps
ENSCGRG00001023686	Ptcd1	85	48.013	ENSONIG00000003168	ptcd1	97	47.517	Oreochromis_niloticus
ENSCGRG00001023686	Ptcd1	80	56.098	ENSOANG00000007728	-	74	55.923	Ornithorhynchus_anatinus
ENSCGRG00001023686	Ptcd1	99	71.064	ENSOCUG00000010584	-	97	71.064	Oryctolagus_cuniculus
ENSCGRG00001023686	Ptcd1	86	48.768	ENSORLG00000009275	ptcd1	86	48.525	Oryzias_latipes
ENSCGRG00001023686	Ptcd1	86	48.604	ENSORLG00020000988	ptcd1	87	48.604	Oryzias_latipes_hni
ENSCGRG00001023686	Ptcd1	86	48.276	ENSORLG00015010557	ptcd1	87	48.033	Oryzias_latipes_hsok
ENSCGRG00001023686	Ptcd1	86	48.852	ENSOMEG00000020627	ptcd1	88	48.440	Oryzias_melastigma
ENSCGRG00001023686	Ptcd1	99	72.206	ENSOGAG00000010877	-	99	72.206	Otolemur_garnettii
ENSCGRG00001023686	Ptcd1	99	68.803	ENSOARG00000018676	-	99	69.231	Ovis_aries
ENSCGRG00001023686	Ptcd1	100	72.404	ENSPPAG00000036024	-	100	72.546	Pan_paniscus
ENSCGRG00001023686	Ptcd1	100	76.454	ENSPPRG00000003478	-	100	76.454	Panthera_pardus
ENSCGRG00001023686	Ptcd1	100	72.262	ENSPTRG00000019452	-	100	72.404	Pan_troglodytes
ENSCGRG00001023686	Ptcd1	99	74.355	ENSPANG00000016730	-	99	74.355	Papio_anubis
ENSCGRG00001023686	Ptcd1	92	49.926	ENSPKIG00000014215	ptcd1	94	51.231	Paramormyrops_kingsleyae
ENSCGRG00001023686	Ptcd1	85	58.794	ENSPSIG00000011184	-	100	59.030	Pelodiscus_sinensis
ENSCGRG00001023686	Ptcd1	73	41.874	ENSPMAG00000009667	ptcd1	100	41.874	Petromyzon_marinus
ENSCGRG00001023686	Ptcd1	87	65.032	ENSPCIG00000024778	-	93	61.561	Phascolarctos_cinereus
ENSCGRG00001023686	Ptcd1	83	47.731	ENSPFOG00000004458	ptcd1	83	47.525	Poecilia_formosa
ENSCGRG00001023686	Ptcd1	83	48.403	ENSPLAG00000011051	ptcd1	84	47.690	Poecilia_latipinna
ENSCGRG00001023686	Ptcd1	83	47.754	ENSPMEG00000020547	ptcd1	83	47.549	Poecilia_mexicana
ENSCGRG00001023686	Ptcd1	83	48.547	ENSPREG00000000059	ptcd1	83	48.142	Poecilia_reticulata
ENSCGRG00001023686	Ptcd1	94	74.507	ENSPPYG00000017377	-	99	74.507	Pongo_abelii
ENSCGRG00001023686	Ptcd1	80	72.143	ENSPCAG00000001852	-	88	72.143	Procavia_capensis
ENSCGRG00001023686	Ptcd1	99	75.178	ENSPCOG00000018596	-	99	75.641	Propithecus_coquereli
ENSCGRG00001023686	Ptcd1	67	85.000	ENSPVAG00000007529	-	72	85.000	Pteropus_vampyrus
ENSCGRG00001023686	Ptcd1	85	49.670	ENSPNYG00000019993	ptcd1	82	49.175	Pundamilia_nyererei
ENSCGRG00001023686	Ptcd1	87	49.522	ENSPNAG00000014931	ptcd1	90	48.762	Pygocentrus_nattereri
ENSCGRG00001023686	Ptcd1	99	81.688	ENSRNOG00000000987	Ptcd1	99	81.688	Rattus_norvegicus
ENSCGRG00001023686	Ptcd1	99	73.745	ENSRBIG00000043393	-	99	73.745	Rhinopithecus_bieti
ENSCGRG00001023686	Ptcd1	99	73.601	ENSRROG00000036420	-	99	73.601	Rhinopithecus_roxellana
ENSCGRG00001023686	Ptcd1	100	73.011	ENSSBOG00000024114	-	100	73.011	Saimiri_boliviensis_boliviensis
ENSCGRG00001023686	Ptcd1	95	58.737	ENSSHAG00000011376	-	96	61.695	Sarcophilus_harrisii
ENSCGRG00001023686	Ptcd1	90	51.863	ENSSFOG00015007909	ptcd1	86	52.329	Scleropages_formosus
ENSCGRG00001023686	Ptcd1	86	46.365	ENSSMAG00000000218	ptcd1	94	46.365	Scophthalmus_maximus
ENSCGRG00001023686	Ptcd1	95	45.753	ENSSDUG00000015671	ptcd1	94	46.177	Seriola_dumerili
ENSCGRG00001023686	Ptcd1	94	45.889	ENSSLDG00000014261	ptcd1	94	45.441	Seriola_lalandi_dorsalis
ENSCGRG00001023686	Ptcd1	86	58.162	ENSSPUG00000003540	-	84	58.533	Sphenodon_punctatus
ENSCGRG00001023686	Ptcd1	93	46.818	ENSSPAG00000011049	ptcd1	89	46.606	Stegastes_partitus
ENSCGRG00001023686	Ptcd1	92	75.846	ENSSSCG00000007622	-	99	75.303	Sus_scrofa
ENSCGRG00001023686	Ptcd1	87	59.903	ENSTGUG00000007563	-	100	60.227	Taeniopygia_guttata
ENSCGRG00001023686	Ptcd1	90	46.782	ENSTRUG00000013471	ptcd1	86	46.625	Takifugu_rubripes
ENSCGRG00001023686	Ptcd1	92	45.776	ENSTNIG00000008271	ptcd1	93	45.776	Tetraodon_nigroviridis
ENSCGRG00001023686	Ptcd1	100	73.164	ENSTBEG00000011021	-	100	73.164	Tupaia_belangeri
ENSCGRG00001023686	Ptcd1	99	73.466	ENSTTRG00000003006	-	99	73.466	Tursiops_truncatus
ENSCGRG00001023686	Ptcd1	100	76.521	ENSUAMG00000008049	-	100	76.521	Ursus_americanus
ENSCGRG00001023686	Ptcd1	99	76.437	ENSVVUG00000008836	-	99	76.437	Vulpes_vulpes
ENSCGRG00001023686	Ptcd1	94	50.904	ENSXETG00000009891	ptcd1	96	50.000	Xenopus_tropicalis
ENSCGRG00001023686	Ptcd1	83	47.973	ENSXMAG00000015540	ptcd1	86	46.365	Xiphophorus_maculatus