EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001023943 (Gene tree)
Gene ID: -
Gene Symbol: Chd1
Alias: 4930525N21Rik
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 63983 bases
Position: chrscaffold_0:58289253-58353235
Accession: 100751866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001026726	ResIII	PF04851.15	3.7e-07	1	1
ENSCGRP00001026712	ResIII	PF04851.15	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001030958	-	7685	-	ENSCGRP00001026712	1710 (aa)	XP_003505320	G3HNU4
ENSCGRT00001030972	-	5127	-	ENSCGRP00001026726	1708 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001023943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001023943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001023943	Chd1	97	55.915	ENSCGRG00001006649	Chd2	91	59.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001023943	Chd1	100	96.145	ENSG00000153922	CHD1	100	96.145	Homo_sapiens
ENSCGRG00001023943	Chd1	67	82.338	ENSAPOG00000005764	chd1	97	82.537	Acanthochromis_polyacanthus
ENSCGRG00001023943	Chd1	89	76.290	ENSAOCG00000023105	chd1	94	76.486	Amphiprion_ocellaris
ENSCGRG00001023943	Chd1	89	77.480	ENSAPEG00000013544	chd1	94	77.676	Amphiprion_percula
ENSCGRG00001023943	Chd1	72	81.392	ENSAMXG00000010843	chd1	91	83.516	Astyanax_mexicanus
ENSCGRG00001023943	Chd1	100	95.624	ENSCATG00000032035	CHD1	100	95.566	Cercocebus_atys
ENSCGRG00001023943	Chd1	100	95.566	ENSCSAG00000015339	CHD1	100	95.508	Chlorocebus_sabaeus
ENSCGRG00001023943	Chd1	59	83.615	ENSCPBG00000015831	CHD1	99	84.136	Chrysemys_picta_bellii
ENSCGRG00001023943	Chd1	100	93.462	ENSCANG00000036916	CHD1	100	93.462	Colobus_angolensis_palliatus
ENSCGRG00001023943	Chd1	100	100.000	ENSCGRG00000008652	Chd1	100	100.000	Cricetulus_griseus_crigri
ENSCGRG00001023943	Chd1	91	74.169	ENSCSEG00000009553	chd1	92	76.861	Cynoglossus_semilaevis
ENSCGRG00001023943	Chd1	92	88.589	ENSEASG00005016110	CHD1	96	95.938	Equus_asinus_asinus
ENSCGRG00001023943	Chd1	89	77.778	ENSELUG00000017677	chd1	93	77.534	Esox_lucius
ENSCGRG00001023943	Chd1	72	80.490	ENSFHEG00000021164	chd1	89	80.490	Fundulus_heteroclitus
ENSCGRG00001023943	Chd1	76	77.238	ENSGMOG00000001537	chd1	100	65.493	Gadus_morhua
ENSCGRG00001023943	Chd1	92	89.094	ENSGALG00000031327	-	96	89.286	Gallus_gallus
ENSCGRG00001023943	Chd1	83	81.763	ENSGAFG00000019880	chd1	95	81.763	Gambusia_affinis
ENSCGRG00001023943	Chd1	99	92.638	ENSGGOG00000011463	CHD1	99	92.638	Gorilla_gorilla
ENSCGRG00001023943	Chd1	88	78.463	ENSHCOG00000014222	chd1	91	78.969	Hippocampus_comes
ENSCGRG00001023943	Chd1	87	81.233	ENSIPUG00000001369	chd1	95	79.389	Ictalurus_punctatus
ENSCGRG00001023943	Chd1	59	94.669	ENSLAFG00000023183	CHD1	94	93.583	Loxodonta_africana
ENSCGRG00001023943	Chd1	100	95.624	ENSMFAG00000031226	CHD1	100	95.566	Macaca_fascicularis
ENSCGRG00001023943	Chd1	83	96.062	ENSMMUG00000014090	CHD1	99	96.062	Macaca_mulatta
ENSCGRG00001023943	Chd1	100	95.569	ENSMNEG00000045073	CHD1	100	95.510	Macaca_nemestrina
ENSCGRG00001023943	Chd1	96	91.667	ENSMLEG00000041096	CHD1	99	91.701	Mandrillus_leucophaeus
ENSCGRG00001023943	Chd1	69	83.151	ENSMZEG00005010957	chd1	94	80.240	Maylandia_zebra
ENSCGRG00001023943	Chd1	100	94.912	ENSMOCG00000019121	Chd1	100	94.912	Microtus_ochrogaster
ENSCGRG00001023943	Chd1	79	77.713	ENSMALG00000013317	chd1	95	77.493	Monopterus_albus
ENSCGRG00001023943	Chd1	100	96.552	MGP_CAROLIEiJ_G0021099	Chd1	100	96.552	Mus_caroli
ENSCGRG00001023943	Chd1	100	96.902	ENSMUSG00000023852	Chd1	100	96.902	Mus_musculus
ENSCGRG00001023943	Chd1	100	96.318	MGP_PahariEiJ_G0023414	Chd1	99	97.868	Mus_pahari
ENSCGRG00001023943	Chd1	87	77.206	ENSNBRG00000006860	chd1	91	77.206	Neolamprologus_brichardi
ENSCGRG00001023943	Chd1	99	93.724	ENSNLEG00000014493	CHD1	99	93.724	Nomascus_leucogenys
ENSCGRG00001023943	Chd1	100	91.691	ENSOANG00000004891	CHD1	100	93.570	Ornithorhynchus_anatinus
ENSCGRG00001023943	Chd1	59	76.280	ENSORLG00015016725	chd1	93	77.323	Oryzias_latipes_hsok
ENSCGRG00001023943	Chd1	100	93.019	ENSPPAG00000043367	CHD1	99	94.376	Pan_paniscus
ENSCGRG00001023943	Chd1	100	95.619	ENSPTRG00000017103	CHD1	100	95.794	Pan_troglodytes
ENSCGRG00001023943	Chd1	100	95.624	ENSPANG00000006387	CHD1	100	95.566	Papio_anubis
ENSCGRG00001023943	Chd1	89	78.107	ENSPKIG00000024719	chd1	92	78.398	Paramormyrops_kingsleyae
ENSCGRG00001023943	Chd1	73	81.155	ENSPMGG00000005785	chd1	93	80.849	Periophthalmus_magnuspinnatus
ENSCGRG00001023943	Chd1	100	98.305	ENSPEMG00000015939	Chd1	100	98.305	Peromyscus_maniculatus_bairdii
ENSCGRG00001023943	Chd1	96	73.574	ENSPREG00000004209	chd1	97	73.599	Poecilia_reticulata
ENSCGRG00001023943	Chd1	83	97.036	ENSRNOG00000014434	Chd1	99	97.036	Rattus_norvegicus
ENSCGRG00001023943	Chd1	100	93.232	ENSRBIG00000044325	CHD1	100	93.291	Rhinopithecus_bieti
ENSCGRG00001023943	Chd1	100	95.449	ENSRROG00000001726	CHD1	100	95.508	Rhinopithecus_roxellana
ENSCGRG00001023943	Chd1	72	82.041	ENSSFOG00015007161	chd1	90	81.789	Scleropages_formosus
ENSCGRG00001023943	Chd1	79	78.146	ENSSDUG00000018314	chd1	87	81.636	Seriola_dumerili
ENSCGRG00001023943	Chd1	51	83.941	ENSSLDG00000017244	chd1	84	85.782	Seriola_lalandi_dorsalis
ENSCGRG00001023943	Chd1	79	77.712	ENSSPAG00000007024	chd1	95	77.565	Stegastes_partitus
ENSCGRG00001023943	Chd1	86	96.479	ENSSSCG00000014177	CHD1	100	96.479	Sus_scrofa
ENSCGRG00001023943	Chd1	90	75.226	ENSTRUG00000010282	chd1	100	73.206	Takifugu_rubripes
ENSCGRG00001023943	Chd1	72	77.488	ENSTNIG00000007101	chd1	100	77.459	Tetraodon_nigroviridis
ENSCGRG00001023943	Chd1	96	71.541	ENSXCOG00000017184	chd1	97	71.134	Xiphophorus_couchianus
ENSCGRG00001023943	Chd1	77	77.532	ENSXMAG00000014538	chd1	95	77.582	Xiphophorus_maculatus