EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00001024897 (Gene tree)
Gene ID: -
Gene Symbol: Blm
Alias: -
Full Name: Bloom syndrome%2C RecQ like helicase
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Minus strand
Length: 84277 bases
Position: chrscaffold_19:18484104-18568380
Accession: 1328362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001028078	HRDC	PF00570.23	1e-11	1	1
ENSCGRP00001028072	HRDC	PF00570.23	1e-11	1	1
ENSCGRP00001028078	BDHCT	PF08072.11	1.5e-21	1	1
ENSCGRP00001028072	BDHCT	PF08072.11	1.5e-21	1	1
ENSCGRP00001028078	DEAD	PF00270.29	6.5e-20	1	1
ENSCGRP00001028072	DEAD	PF00270.29	6.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001032320	-	6527	-	ENSCGRP00001028072	1410 (aa)	-	-
ENSCGRT00001032326	-	4212	-	ENSCGRP00001028078	1403 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001024897's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001024897's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001024897	Blm	100	78.973	ENSG00000197299	BLM	100	78.762	Homo_sapiens
ENSCGRG00001024897	Blm	59	61.775	ENSAPOG00000017966	blm	59	61.893	Acanthochromis_polyacanthus
ENSCGRG00001024897	Blm	100	77.177	ENSAMEG00000013843	BLM	100	77.177	Ailuropoda_melanoleuca
ENSCGRG00001024897	Blm	60	62.915	ENSACIG00000023762	blm	60	62.574	Amphilophus_citrinellus
ENSCGRG00001024897	Blm	59	61.449	ENSAOCG00000003318	blm	60	62.028	Amphiprion_ocellaris
ENSCGRG00001024897	Blm	60	62.045	ENSAPEG00000018105	blm	59	61.910	Amphiprion_percula
ENSCGRG00001024897	Blm	80	58.171	ENSAPLG00000006878	BLM	96	57.374	Anas_platyrhynchos
ENSCGRG00001024897	Blm	100	78.551	ENSANAG00000038415	BLM	100	78.622	Aotus_nancymaae
ENSCGRG00001024897	Blm	88	63.195	ENSACLG00000020354	blm	76	53.839	Astatotilapia_calliptera
ENSCGRG00001024897	Blm	58	65.773	ENSAMXG00000016970	blm	63	62.587	Astyanax_mexicanus
ENSCGRG00001024897	Blm	93	78.289	ENSBTAG00000020301	BLM	100	78.289	Bos_taurus
ENSCGRG00001024897	Blm	100	77.778	ENSCJAG00000009803	BLM	100	77.989	Callithrix_jacchus
ENSCGRG00001024897	Blm	100	77.199	ENSCAFG00000012385	BLM	100	76.636	Canis_familiaris
ENSCGRG00001024897	Blm	100	77.129	ENSCAFG00020016111	BLM	95	89.744	Canis_lupus_dingo
ENSCGRG00001024897	Blm	100	76.355	ENSCHIG00000010329	BLM	100	78.289	Capra_hircus
ENSCGRG00001024897	Blm	100	77.567	ENSTSYG00000012368	BLM	100	78.129	Carlito_syrichta
ENSCGRG00001024897	Blm	88	84.582	ENSCAPG00000017976	BLM	99	83.862	Cavia_aperea
ENSCGRG00001024897	Blm	100	75.264	ENSCPOG00000001761	BLM	100	75.105	Cavia_porcellus
ENSCGRG00001024897	Blm	100	77.199	ENSCCAG00000023069	BLM	100	77.692	Cebus_capucinus
ENSCGRG00001024897	Blm	100	78.551	ENSCATG00000040609	BLM	92	92.453	Cercocebus_atys
ENSCGRG00001024897	Blm	100	77.042	ENSCLAG00000012111	BLM	100	76.972	Chinchilla_lanigera
ENSCGRG00001024897	Blm	100	78.252	ENSCSAG00000017040	BLM	100	78.112	Chlorocebus_sabaeus
ENSCGRG00001024897	Blm	91	75.316	ENSCHOG00000006255	BLM	93	75.316	Choloepus_hoffmanni
ENSCGRG00001024897	Blm	89	55.046	ENSCPBG00000025000	BLM	88	73.870	Chrysemys_picta_bellii
ENSCGRG00001024897	Blm	89	68.631	ENSCANG00000034808	BLM	100	68.371	Colobus_angolensis_palliatus
ENSCGRG00001024897	Blm	67	99.364	ENSCGRG00000016261	Blm	96	99.364	Cricetulus_griseus_crigri
ENSCGRG00001024897	Blm	90	48.967	ENSCSEG00000013483	blm	63	62.574	Cynoglossus_semilaevis
ENSCGRG00001024897	Blm	60	78.241	ENSCVAG00000017583	blm	77	78.241	Cyprinodon_variegatus
ENSCGRG00001024897	Blm	84	64.646	ENSDARG00000077089	blm	83	65.316	Danio_rerio
ENSCGRG00001024897	Blm	99	74.194	ENSDNOG00000010159	BLM	99	73.983	Dasypus_novemcinctus
ENSCGRG00001024897	Blm	74	81.322	ENSDORG00000011033	Blm	100	81.513	Dipodomys_ordii
ENSCGRG00001024897	Blm	52	41.987	FBgn0002906	Blm	53	40.625	Drosophila_melanogaster
ENSCGRG00001024897	Blm	79	82.500	ENSETEG00000015019	BLM	75	82.500	Echinops_telfairi
ENSCGRG00001024897	Blm	100	76.864	ENSEASG00005006727	BLM	100	76.301	Equus_asinus_asinus
ENSCGRG00001024897	Blm	100	78.746	ENSECAG00000011405	BLM	100	78.188	Equus_caballus
ENSCGRG00001024897	Blm	98	72.150	ENSEEUG00000001434	BLM	98	71.861	Erinaceus_europaeus
ENSCGRG00001024897	Blm	84	67.424	ENSELUG00000019098	blm	54	67.424	Esox_lucius
ENSCGRG00001024897	Blm	100	75.018	ENSFCAG00000006087	BLM	100	74.807	Felis_catus
ENSCGRG00001024897	Blm	76	57.745	ENSFALG00000010981	BLM	99	51.608	Ficedula_albicollis
ENSCGRG00001024897	Blm	100	70.988	ENSFDAG00000012658	BLM	100	72.861	Fukomys_damarensis
ENSCGRG00001024897	Blm	59	62.843	ENSFHEG00000002553	blm	75	54.751	Fundulus_heteroclitus
ENSCGRG00001024897	Blm	58	59.976	ENSGMOG00000016431	blm	90	60.819	Gadus_morhua
ENSCGRG00001024897	Blm	80	56.998	ENSGALG00000008256	BLM	99	50.541	Gallus_gallus
ENSCGRG00001024897	Blm	60	62.322	ENSGAFG00000001117	blm	63	62.738	Gambusia_affinis
ENSCGRG00001024897	Blm	80	52.476	ENSGACG00000010863	blm	100	73.574	Gasterosteus_aculeatus
ENSCGRG00001024897	Blm	89	52.003	ENSGAGG00000005383	BLM	81	77.614	Gopherus_agassizii
ENSCGRG00001024897	Blm	100	78.622	ENSGGOG00000007710	BLM	92	92.761	Gorilla_gorilla
ENSCGRG00001024897	Blm	60	63.282	ENSHBUG00000015943	blm	75	55.451	Haplochromis_burtoni
ENSCGRG00001024897	Blm	100	78.270	ENSHGLG00000013231	BLM	99	78.255	Heterocephalus_glaber_female
ENSCGRG00001024897	Blm	74	55.587	ENSHCOG00000011455	blm	83	62.892	Hippocampus_comes
ENSCGRG00001024897	Blm	75	53.947	ENSIPUG00000000529	blm	68	66.108	Ictalurus_punctatus
ENSCGRG00001024897	Blm	100	78.129	ENSSTOG00000005000	BLM	100	78.792	Ictidomys_tridecemlineatus
ENSCGRG00001024897	Blm	66	88.310	ENSJJAG00000016322	Blm	94	88.468	Jaculus_jaculus
ENSCGRG00001024897	Blm	59	64.311	ENSKMAG00000016608	blm	59	64.174	Kryptolebias_marmoratus
ENSCGRG00001024897	Blm	60	67.256	ENSLACG00000006490	BLM	58	67.689	Latimeria_chalumnae
ENSCGRG00001024897	Blm	99	45.608	ENSLOCG00000014302	blm	86	61.899	Lepisosteus_oculatus
ENSCGRG00001024897	Blm	100	78.622	ENSMFAG00000042982	BLM	92	92.992	Macaca_fascicularis
ENSCGRG00001024897	Blm	100	78.692	ENSMMUG00000019526	BLM	92	92.992	Macaca_mulatta
ENSCGRG00001024897	Blm	98	76.136	ENSMNEG00000031251	BLM	92	92.722	Macaca_nemestrina
ENSCGRG00001024897	Blm	100	76.301	ENSMLEG00000032934	BLM	100	75.809	Mandrillus_leucophaeus
ENSCGRG00001024897	Blm	60	64.235	ENSMAMG00000008726	blm	88	65.053	Mastacembelus_armatus
ENSCGRG00001024897	Blm	99	46.901	ENSMZEG00005022323	blm	87	55.419	Maylandia_zebra
ENSCGRG00001024897	Blm	100	94.625	ENSMAUG00000008953	Blm	99	94.413	Mesocricetus_auratus
ENSCGRG00001024897	Blm	100	78.270	ENSMICG00000034442	BLM	100	78.340	Microcebus_murinus
ENSCGRG00001024897	Blm	100	88.652	ENSMOCG00000016367	Blm	99	88.652	Microtus_ochrogaster
ENSCGRG00001024897	Blm	60	62.338	ENSMMOG00000006959	blm	60	62.338	Mola_mola
ENSCGRG00001024897	Blm	99	62.449	ENSMODG00000019449	BLM	99	62.201	Monodelphis_domestica
ENSCGRG00001024897	Blm	73	64.052	ENSMALG00000007323	blm	68	63.807	Monopterus_albus
ENSCGRG00001024897	Blm	100	84.300	MGP_CAROLIEiJ_G0029907	Blm	100	84.158	Mus_caroli
ENSCGRG00001024897	Blm	100	84.437	ENSMUSG00000030528	Blm	100	84.155	Mus_musculus
ENSCGRG00001024897	Blm	100	85.198	MGP_PahariEiJ_G0013129	Blm	100	85.057	Mus_pahari
ENSCGRG00001024897	Blm	100	84.648	MGP_SPRETEiJ_G0031009	Blm	100	84.615	Mus_spretus
ENSCGRG00001024897	Blm	84	76.179	ENSMPUG00000015657	BLM	99	76.179	Mustela_putorius_furo
ENSCGRG00001024897	Blm	100	74.842	ENSMLUG00000014697	BLM	100	75.070	Myotis_lucifugus
ENSCGRG00001024897	Blm	100	83.816	ENSNGAG00000001275	Blm	100	83.168	Nannospalax_galili
ENSCGRG00001024897	Blm	60	63.033	ENSNBRG00000019702	blm	74	55.419	Neolamprologus_brichardi
ENSCGRG00001024897	Blm	100	77.286	ENSNLEG00000012087	BLM	100	81.740	Nomascus_leucogenys
ENSCGRG00001024897	Blm	99	59.762	ENSMEUG00000007253	BLM	99	59.552	Notamacropus_eugenii
ENSCGRG00001024897	Blm	95	87.101	ENSOPRG00000011667	BLM	95	86.806	Ochotona_princeps
ENSCGRG00001024897	Blm	74	78.257	ENSODEG00000015373	BLM	100	78.352	Octodon_degus
ENSCGRG00001024897	Blm	60	62.077	ENSONIG00000015193	blm	99	46.907	Oreochromis_niloticus
ENSCGRG00001024897	Blm	54	81.486	ENSOANG00000009316	-	99	81.486	Ornithorhynchus_anatinus
ENSCGRG00001024897	Blm	99	72.523	ENSOCUG00000013969	BLM	99	72.382	Oryctolagus_cuniculus
ENSCGRG00001024897	Blm	88	64.482	ENSORLG00000008110	blm	63	63.952	Oryzias_latipes
ENSCGRG00001024897	Blm	88	64.311	ENSORLG00020004812	blm	63	63.886	Oryzias_latipes_hni
ENSCGRG00001024897	Blm	80	53.125	ENSORLG00015018640	blm	78	66.795	Oryzias_latipes_hsok
ENSCGRG00001024897	Blm	69	62.813	ENSOMEG00000023545	blm	87	63.265	Oryzias_melastigma
ENSCGRG00001024897	Blm	100	73.296	ENSOGAG00000005708	BLM	100	73.366	Otolemur_garnettii
ENSCGRG00001024897	Blm	100	76.081	ENSOARG00000012875	BLM	100	75.662	Ovis_aries
ENSCGRG00001024897	Blm	100	78.692	ENSPPAG00000032173	BLM	100	78.692	Pan_paniscus
ENSCGRG00001024897	Blm	100	75.351	ENSPPRG00000002471	BLM	100	75.140	Panthera_pardus
ENSCGRG00001024897	Blm	100	74.965	ENSPTIG00000016168	BLM	100	74.755	Panthera_tigris_altaica
ENSCGRG00001024897	Blm	100	78.481	ENSPTRG00000007460	BLM	100	78.481	Pan_troglodytes
ENSCGRG00001024897	Blm	100	78.692	ENSPANG00000018572	BLM	92	92.722	Papio_anubis
ENSCGRG00001024897	Blm	88	63.251	ENSPKIG00000008954	blm	66	63.550	Paramormyrops_kingsleyae
ENSCGRG00001024897	Blm	51	67.782	ENSPMGG00000006629	blm	79	67.737	Periophthalmus_magnuspinnatus
ENSCGRG00001024897	Blm	100	89.611	ENSPEMG00000017348	Blm	100	89.541	Peromyscus_maniculatus_bairdii
ENSCGRG00001024897	Blm	50	59.410	ENSPMAG00000000445	blm	96	59.551	Petromyzon_marinus
ENSCGRG00001024897	Blm	99	61.096	ENSPCIG00000006609	BLM	99	60.890	Phascolarctos_cinereus
ENSCGRG00001024897	Blm	59	62.892	ENSPFOG00000005059	blm	99	47.230	Poecilia_formosa
ENSCGRG00001024897	Blm	55	65.979	ENSPLAG00000017344	blm	56	65.979	Poecilia_latipinna
ENSCGRG00001024897	Blm	59	62.892	ENSPMEG00000000321	blm	59	63.350	Poecilia_mexicana
ENSCGRG00001024897	Blm	55	65.891	ENSPREG00000007715	blm	56	65.891	Poecilia_reticulata
ENSCGRG00001024897	Blm	100	77.286	ENSPPYG00000006784	BLM	100	77.075	Pongo_abelii
ENSCGRG00001024897	Blm	73	82.844	ENSPCAG00000008960	BLM	73	82.844	Procavia_capensis
ENSCGRG00001024897	Blm	100	72.011	ENSPCOG00000000439	BLM	100	76.048	Propithecus_coquereli
ENSCGRG00001024897	Blm	80	94.516	ENSPVAG00000011642	BLM	83	94.516	Pteropus_vampyrus
ENSCGRG00001024897	Blm	99	40.644	ENSPNYG00000010956	blm	99	40.869	Pundamilia_nyererei
ENSCGRG00001024897	Blm	62	64.910	ENSPNAG00000011714	blm	87	64.887	Pygocentrus_nattereri
ENSCGRG00001024897	Blm	100	84.054	ENSRNOG00000011213	Blm	100	83.770	Rattus_norvegicus
ENSCGRG00001024897	Blm	100	76.901	ENSRBIG00000029656	BLM	100	84.866	Rhinopithecus_bieti
ENSCGRG00001024897	Blm	100	78.270	ENSRROG00000037871	BLM	92	91.644	Rhinopithecus_roxellana
ENSCGRG00001024897	Blm	91	77.039	ENSSBOG00000030957	BLM	100	76.684	Saimiri_boliviensis_boliviensis
ENSCGRG00001024897	Blm	99	61.351	ENSSHAG00000007988	BLM	99	61.908	Sarcophilus_harrisii
ENSCGRG00001024897	Blm	55	65.063	ENSSFOG00015015462	blm	63	64.796	Scleropages_formosus
ENSCGRG00001024897	Blm	60	62.338	ENSSMAG00000001120	blm	60	62.574	Scophthalmus_maximus
ENSCGRG00001024897	Blm	59	63.002	ENSSDUG00000010955	blm	76	54.931	Seriola_dumerili
ENSCGRG00001024897	Blm	70	63.121	ENSSLDG00000000634	blm	76	54.101	Seriola_lalandi_dorsalis
ENSCGRG00001024897	Blm	93	67.955	ENSSARG00000006398	BLM	94	73.703	Sorex_araneus
ENSCGRG00001024897	Blm	80	56.066	ENSSPUG00000000013	BLM	93	59.562	Sphenodon_punctatus
ENSCGRG00001024897	Blm	60	62.618	ENSSPAG00000013999	blm	59	62.692	Stegastes_partitus
ENSCGRG00001024897	Blm	100	77.498	ENSSSCG00000001816	BLM	99	77.495	Sus_scrofa
ENSCGRG00001024897	Blm	79	51.382	ENSTGUG00000009959	-	95	52.570	Taeniopygia_guttata
ENSCGRG00001024897	Blm	83	50.911	ENSTRUG00000019860	blm	99	45.626	Takifugu_rubripes
ENSCGRG00001024897	Blm	99	46.341	ENSTNIG00000019246	blm	87	55.019	Tetraodon_nigroviridis
ENSCGRG00001024897	Blm	79	81.559	ENSTBEG00000006706	BLM	81	81.559	Tupaia_belangeri
ENSCGRG00001024897	Blm	100	77.199	ENSTTRG00000016386	BLM	100	77.129	Tursiops_truncatus
ENSCGRG00001024897	Blm	100	77.567	ENSUMAG00000009105	BLM	97	91.245	Ursus_maritimus
ENSCGRG00001024897	Blm	99	75.070	ENSVPAG00000000085	BLM	99	75.634	Vicugna_pacos
ENSCGRG00001024897	Blm	96	88.462	ENSVVUG00000006402	BLM	100	88.462	Vulpes_vulpes
ENSCGRG00001024897	Blm	99	50.376	ENSXETG00000007847	blm	99	50.273	Xenopus_tropicalis
ENSCGRG00001024897	Blm	59	59.472	ENSXCOG00000020227	blm	55	62.500	Xiphophorus_couchianus
ENSCGRG00001024897	Blm	55	65.504	ENSXMAG00000002951	blm	56	65.464	Xiphophorus_maculatus