EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00001025050 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cricetulus_griseus_chok1gshd
Status: putative
Strand: Plus strand
Length: 10316 bases
Position: chrscaffold_15:14661567-14671882
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00001028300	RRM_1	PF00076.22	3.2e-18	1	1
ENSCGRP00001028300	RRM_3	PF08777.11	8.2e-30	1	1
ENSCGRP00001028300	La	PF05383.17	1.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00001032548	-	1713	-	ENSCGRP00001028300	570 (aa)	-	-

Gene Model

Click here to download ENSCGRG00001025050's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00001025050's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00001025050	-	90	88.911	ENSCGRG00001012747	-	99	88.911

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00001025050	-	96	83.871	ENSG00000174720	LARP7	100	86.047	Homo_sapiens
ENSCGRG00001025050	-	98	54.704	ENSAPOG00000014570	larp7	95	54.643	Acanthochromis_polyacanthus
ENSCGRG00001025050	-	100	82.192	ENSAMEG00000015642	LARP7	100	82.192	Ailuropoda_melanoleuca
ENSCGRG00001025050	-	96	54.741	ENSAOCG00000016160	larp7	95	54.137	Amphiprion_ocellaris
ENSCGRG00001025050	-	96	54.545	ENSAPEG00000021823	larp7	95	53.763	Amphiprion_percula
ENSCGRG00001025050	-	98	56.392	ENSATEG00000016238	larp7	95	56.396	Anabas_testudineus
ENSCGRG00001025050	-	99	69.052	ENSAPLG00000012887	LARP7	94	69.930	Anas_platyrhynchos
ENSCGRG00001025050	-	99	66.384	ENSACAG00000010662	LARP7	91	67.143	Anolis_carolinensis
ENSCGRG00001025050	-	96	67.145	ENSANAG00000022318	-	100	66.096	Aotus_nancymaae
ENSCGRG00001025050	-	96	81.753	ENSANAG00000031139	-	100	80.034	Aotus_nancymaae
ENSCGRG00001025050	-	98	54.321	ENSACLG00000023184	larp7	95	53.565	Astatotilapia_calliptera
ENSCGRG00001025050	-	98	54.610	ENSAMXG00000002549	larp7	94	52.910	Astyanax_mexicanus
ENSCGRG00001025050	-	100	81.615	ENSBTAG00000009632	LARP7	97	81.615	Bos_taurus
ENSCGRG00001025050	-	96	83.842	ENSCJAG00000003711	LARP7	100	82.021	Callithrix_jacchus
ENSCGRG00001025050	-	96	82.353	ENSCAFG00000011715	LARP7	100	81.431	Canis_familiaris
ENSCGRG00001025050	-	96	83.303	ENSCAFG00020017225	LARP7	100	82.302	Canis_lupus_dingo
ENSCGRG00001025050	-	100	69.284	ENSCHIG00000013971	-	95	87.097	Capra_hircus
ENSCGRG00001025050	-	96	82.734	ENSCHIG00000014163	-	100	81.787	Capra_hircus
ENSCGRG00001025050	-	90	83.462	ENSTSYG00000006769	-	100	82.418	Carlito_syrichta
ENSCGRG00001025050	-	96	75.228	ENSTSYG00000035188	-	97	74.954	Carlito_syrichta
ENSCGRG00001025050	-	100	73.205	ENSCAPG00000009328	LARP7	100	72.855	Cavia_aperea
ENSCGRG00001025050	-	100	80.977	ENSCPOG00000011830	LARP7	100	80.803	Cavia_porcellus
ENSCGRG00001025050	-	96	83.900	ENSCCAG00000026787	-	100	82.082	Cebus_capucinus
ENSCGRG00001025050	-	96	75.963	ENSCCAG00000023563	-	100	75.963	Cebus_capucinus
ENSCGRG00001025050	-	96	83.662	ENSCATG00000043535	LARP7	100	82.877	Cercocebus_atys
ENSCGRG00001025050	-	100	83.246	ENSCLAG00000005894	LARP7	100	83.246	Chinchilla_lanigera
ENSCGRG00001025050	-	96	83.842	ENSCSAG00000003810	LARP7	100	83.048	Chlorocebus_sabaeus
ENSCGRG00001025050	-	100	80.517	ENSCHOG00000002379	-	100	81.034	Choloepus_hoffmanni
ENSCGRG00001025050	-	93	71.823	ENSCHOG00000008967	-	100	71.823	Choloepus_hoffmanni
ENSCGRG00001025050	-	98	68.151	ENSCPBG00000004919	LARP7	96	70.018	Chrysemys_picta_bellii
ENSCGRG00001025050	-	67	36.970	ENSCING00000021685	-	74	36.478	Ciona_intestinalis
ENSCGRG00001025050	-	96	83.513	ENSCANG00000031482	LARP7	99	82.735	Colobus_angolensis_palliatus
ENSCGRG00001025050	-	96	89.541	ENSCGRG00000007642	-	99	89.541	Cricetulus_griseus_crigri
ENSCGRG00001025050	-	95	91.193	ENSCGRG00000001141	-	100	91.193	Cricetulus_griseus_crigri
ENSCGRG00001025050	-	98	52.962	ENSCSEG00000009088	larp7	95	54.348	Cynoglossus_semilaevis
ENSCGRG00001025050	-	96	55.596	ENSCVAG00000016852	larp7	78	73.889	Cyprinodon_variegatus
ENSCGRG00001025050	-	98	53.954	ENSDARG00000017315	larp7	93	52.793	Danio_rerio
ENSCGRG00001025050	-	100	80.546	ENSDNOG00000013761	LARP7	100	81.741	Dasypus_novemcinctus
ENSCGRG00001025050	-	96	85.584	ENSDORG00000008896	-	95	84.296	Dipodomys_ordii
ENSCGRG00001025050	-	96	76.978	ENSETEG00000011692	LARP7	95	76.673	Echinops_telfairi
ENSCGRG00001025050	-	100	81.507	ENSEASG00005005592	LARP7	100	81.507	Equus_asinus_asinus
ENSCGRG00001025050	-	100	81.336	ENSECAG00000000834	LARP7	100	81.336	Equus_caballus
ENSCGRG00001025050	-	92	80.989	ENSEEUG00000012824	LARP7	100	79.710	Erinaceus_europaeus
ENSCGRG00001025050	-	98	53.472	ENSELUG00000015341	larp7	92	73.367	Esox_lucius
ENSCGRG00001025050	-	96	83.633	ENSFCAG00000031966	LARP7	95	83.544	Felis_catus
ENSCGRG00001025050	-	99	70.558	ENSFALG00000000972	LARP7	92	71.174	Ficedula_albicollis
ENSCGRG00001025050	-	100	75.302	ENSFDAG00000011855	-	100	75.648	Fukomys_damarensis
ENSCGRG00001025050	-	96	83.091	ENSFDAG00000014048	-	100	81.850	Fukomys_damarensis
ENSCGRG00001025050	-	99	69.076	ENSGALG00000012048	LARP7	94	69.735	Gallus_gallus
ENSCGRG00001025050	-	98	54.145	ENSGAFG00000015400	larp7	94	54.029	Gambusia_affinis
ENSCGRG00001025050	-	99	51.839	ENSGACG00000019618	larp7	79	71.111	Gasterosteus_aculeatus
ENSCGRG00001025050	-	96	68.651	ENSGAGG00000024520	LARP7	95	70.123	Gopherus_agassizii
ENSCGRG00001025050	-	87	80.512	ENSGGOG00000006438	-	97	80.512	Gorilla_gorilla
ENSCGRG00001025050	-	96	83.871	ENSGGOG00000023567	-	100	82.051	Gorilla_gorilla
ENSCGRG00001025050	-	98	54.497	ENSHBUG00000019223	larp7	95	55.576	Haplochromis_burtoni
ENSCGRG00001025050	-	96	81.720	ENSHGLG00000002716	LARP7	100	80.551	Heterocephalus_glaber_female
ENSCGRG00001025050	-	96	81.720	ENSHGLG00100000332	LARP7	100	80.551	Heterocephalus_glaber_male
ENSCGRG00001025050	-	97	53.701	ENSIPUG00000019886	larp7	94	52.773	Ictalurus_punctatus
ENSCGRG00001025050	-	100	82.765	ENSSTOG00000011789	LARP7	100	84.130	Ictidomys_tridecemlineatus
ENSCGRG00001025050	-	100	84.775	ENSJJAG00000000257	-	100	84.775	Jaculus_jaculus
ENSCGRG00001025050	-	97	53.274	ENSKMAG00000005057	larp7	95	53.501	Kryptolebias_marmoratus
ENSCGRG00001025050	-	98	50.344	ENSLBEG00000020062	larp7	95	51.693	Labrus_bergylta
ENSCGRG00001025050	-	99	59.265	ENSLACG00000013744	LARP7	95	60.900	Latimeria_chalumnae
ENSCGRG00001025050	-	96	48.714	ENSLOCG00000011608	larp7	95	48.007	Lepisosteus_oculatus
ENSCGRG00001025050	-	100	83.649	ENSLAFG00000015769	LARP7	100	83.993	Loxodonta_africana
ENSCGRG00001025050	-	96	83.662	ENSMFAG00000036506	LARP7	100	82.877	Macaca_fascicularis
ENSCGRG00001025050	-	96	83.662	ENSMMUG00000017911	LARP7	100	82.877	Macaca_mulatta
ENSCGRG00001025050	-	96	83.842	ENSMNEG00000034758	LARP7	100	83.048	Macaca_nemestrina
ENSCGRG00001025050	-	96	83.842	ENSMLEG00000026154	LARP7	100	83.048	Mandrillus_leucophaeus
ENSCGRG00001025050	-	98	51.852	ENSMAMG00000005835	larp7	95	54.645	Mastacembelus_armatus
ENSCGRG00001025050	-	98	54.321	ENSMZEG00005002084	larp7	95	53.565	Maylandia_zebra
ENSCGRG00001025050	-	99	69.588	ENSMGAG00000010947	LARP7	95	70.344	Meleagris_gallopavo
ENSCGRG00001025050	-	100	80.351	ENSMAUG00000005625	-	100	80.351	Mesocricetus_auratus
ENSCGRG00001025050	-	96	84.919	ENSMICG00000031035	LARP7	95	85.199	Microcebus_murinus
ENSCGRG00001025050	-	100	93.206	ENSMOCG00000012519	-	100	93.206	Microtus_ochrogaster
ENSCGRG00001025050	-	89	90.392	ENSMOCG00000015761	-	100	90.392	Microtus_ochrogaster
ENSCGRG00001025050	-	99	73.142	ENSMODG00000005669	LARP7	100	73.142	Monodelphis_domestica
ENSCGRG00001025050	-	100	92.321	MGP_CAROLIEiJ_G0025613	-	100	91.972	Mus_caroli
ENSCGRG00001025050	-	100	91.274	ENSMUSG00000027968	Larp7	100	96.296	Mus_musculus
ENSCGRG00001025050	-	100	91.783	MGP_PahariEiJ_G0027060	-	100	91.958	Mus_pahari
ENSCGRG00001025050	-	100	91.986	MGP_SPRETEiJ_G0026566	Larp7	100	91.986	Mus_spretus
ENSCGRG00001025050	-	95	80.479	ENSMPUG00000018052	-	100	80.847	Mustela_putorius_furo
ENSCGRG00001025050	-	96	84.022	ENSMPUG00000008331	-	100	83.190	Mustela_putorius_furo
ENSCGRG00001025050	-	86	74.008	ENSMLUG00000027214	LARP7	100	74.008	Myotis_lucifugus
ENSCGRG00001025050	-	100	83.649	ENSNGAG00000007368	-	100	84.165	Nannospalax_galili
ENSCGRG00001025050	-	96	83.662	ENSNLEG00000016354	LARP7	99	81.849	Nomascus_leucogenys
ENSCGRG00001025050	-	88	72.656	ENSMEUG00000004739	LARP7	100	72.656	Notamacropus_eugenii
ENSCGRG00001025050	-	86	87.218	ENSOPRG00000009594	-	87	87.218	Ochotona_princeps
ENSCGRG00001025050	-	96	80.072	ENSODEG00000011121	LARP7	98	80.072	Octodon_degus
ENSCGRG00001025050	-	96	54.414	ENSONIG00000008763	larp7	95	53.565	Oreochromis_niloticus
ENSCGRG00001025050	-	99	73.232	ENSOANG00000009298	LARP7	99	73.737	Ornithorhynchus_anatinus
ENSCGRG00001025050	-	100	79.966	ENSOCUG00000007073	LARP7	100	79.966	Oryctolagus_cuniculus
ENSCGRG00001025050	-	96	53.818	ENSORLG00000004978	larp7	94	53.931	Oryzias_latipes
ENSCGRG00001025050	-	96	54.000	ENSORLG00020013825	larp7	94	54.113	Oryzias_latipes_hni
ENSCGRG00001025050	-	96	54.809	ENSOMEG00000006920	larp7	94	55.128	Oryzias_melastigma
ENSCGRG00001025050	-	96	84.258	ENSOGAG00000001643	LARP7	100	82.423	Otolemur_garnettii
ENSCGRG00001025050	-	96	82.648	ENSOARG00000001809	LARP7	100	81.709	Ovis_aries
ENSCGRG00001025050	-	96	83.513	ENSPPAG00000038420	LARP7	99	81.709	Pan_paniscus
ENSCGRG00001025050	-	96	83.483	ENSPPRG00000023256	LARP7	95	83.394	Panthera_pardus
ENSCGRG00001025050	-	92	82.895	ENSPTIG00000021146	LARP7	92	82.642	Panthera_tigris_altaica
ENSCGRG00001025050	-	96	83.871	ENSPTRG00000016380	LARP7	95	83.784	Pan_troglodytes
ENSCGRG00001025050	-	96	83.692	ENSPANG00000006701	LARP7	99	82.906	Papio_anubis
ENSCGRG00001025050	-	98	56.098	ENSPKIG00000023484	larp7	94	56.708	Paramormyrops_kingsleyae
ENSCGRG00001025050	-	99	68.718	ENSPSIG00000014419	LARP7	93	69.052	Pelodiscus_sinensis
ENSCGRG00001025050	-	100	90.785	ENSPEMG00000013978	-	100	90.956	Peromyscus_maniculatus_bairdii
ENSCGRG00001025050	-	99	72.804	ENSPCIG00000020284	LARP7	98	79.487	Phascolarctos_cinereus
ENSCGRG00001025050	-	98	54.833	ENSPFOG00000000265	larp7	95	52.900	Poecilia_formosa
ENSCGRG00001025050	-	98	54.417	ENSPLAG00000012181	larp7	94	53.565	Poecilia_latipinna
ENSCGRG00001025050	-	98	54.417	ENSPMEG00000007182	larp7	94	53.565	Poecilia_mexicana
ENSCGRG00001025050	-	99	53.195	ENSPREG00000019513	larp7	94	53.199	Poecilia_reticulata
ENSCGRG00001025050	-	96	83.871	ENSPPYG00000015010	LARP7	100	82.051	Pongo_abelii
ENSCGRG00001025050	-	58	100.000	ENSPCAG00000003373	-	66	100.000	Procavia_capensis
ENSCGRG00001025050	-	77	90.000	ENSPCOG00000023946	LARP7	84	90.000	Propithecus_coquereli
ENSCGRG00001025050	-	100	78.157	ENSPVAG00000000282	LARP7	100	78.157	Pteropus_vampyrus
ENSCGRG00001025050	-	96	53.203	ENSPNAG00000017554	larp7	94	54.122	Pygocentrus_nattereri
ENSCGRG00001025050	-	100	88.792	ENSRNOG00000048989	Larp7	100	89.336	Rattus_norvegicus
ENSCGRG00001025050	-	82	92.593	ENSRBIG00000031916	LARP7	99	92.593	Rhinopithecus_bieti
ENSCGRG00001025050	-	96	83.483	ENSRROG00000033414	LARP7	100	82.705	Rhinopithecus_roxellana
ENSCGRG00001025050	-	96	83.721	ENSSBOG00000030886	-	99	82.333	Saimiri_boliviensis_boliviensis
ENSCGRG00001025050	-	96	62.724	ENSSBOG00000022652	-	95	62.590	Saimiri_boliviensis_boliviensis
ENSCGRG00001025050	-	99	71.743	ENSSHAG00000008153	LARP7	95	72.518	Sarcophilus_harrisii
ENSCGRG00001025050	-	98	54.266	ENSSFOG00015019344	larp7	94	53.901	Scleropages_formosus
ENSCGRG00001025050	-	96	56.351	ENSSMAG00000011296	larp7	99	55.594	Scophthalmus_maximus
ENSCGRG00001025050	-	99	55.250	ENSSDUG00000007045	larp7	95	54.301	Seriola_dumerili
ENSCGRG00001025050	-	52	75.667	ENSSARG00000000190	-	97	75.667	Sorex_araneus
ENSCGRG00001025050	-	98	54.609	ENSSPAG00000016066	larp7	95	55.357	Stegastes_partitus
ENSCGRG00001025050	-	96	82.944	ENSSSCG00000009119	LARP7	95	82.852	Sus_scrofa
ENSCGRG00001025050	-	99	69.191	ENSTGUG00000001804	LARP7	95	69.065	Taeniopygia_guttata
ENSCGRG00001025050	-	96	48.841	ENSTNIG00000007183	larp7	95	47.670	Tetraodon_nigroviridis
ENSCGRG00001025050	-	96	78.777	ENSTBEG00000009188	LARP7	98	78.559	Tupaia_belangeri
ENSCGRG00001025050	-	91	79.507	ENSTTRG00000005233	LARP7	100	81.594	Tursiops_truncatus
ENSCGRG00001025050	-	96	83.303	ENSUAMG00000000836	LARP7	100	81.507	Ursus_americanus
ENSCGRG00001025050	-	95	82.878	ENSUMAG00000002263	LARP7	98	81.076	Ursus_maritimus
ENSCGRG00001025050	-	96	83.333	ENSVPAG00000010502	LARP7	100	81.538	Vicugna_pacos
ENSCGRG00001025050	-	96	83.483	ENSVVUG00000002274	LARP7	100	82.474	Vulpes_vulpes
ENSCGRG00001025050	-	98	62.111	ENSXETG00000024097	larp7	94	61.744	Xenopus_tropicalis
ENSCGRG00001025050	-	98	53.982	ENSXCOG00000004883	larp7	83	72.778	Xiphophorus_couchianus
ENSCGRG00001025050	-	98	53.901	ENSXMAG00000008479	larp7	94	53.114	Xiphophorus_maculatus