EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000000247 (Gene tree)
Gene ID: 102176403
Gene Symbol: -
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 15270 bases
Position: chrLWLT01000027.1:24593316-24608585
Accession: 102176403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000000346	Smg4_UPF3	PF03467.15	5.5e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000000371	-	1452	XM_018044210	ENSCHIP00000000346	483 (aa)	XP_017899699	UPI00029D5FCB

Gene Model

Click here to download ENSCHIG00000000247's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000000247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000000247	-	91	65.068	ENSCHIG00000011454	-	92	63.470
ENSCHIG00000000247	-	98	99.364	ENSCHIG00000018011	-	100	99.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000000247	-	100	95.859	ENSG00000125351	UPF3B	100	95.859	Homo_sapiens
ENSCHIG00000000247	-	89	47.523	ENSG00000169062	UPF3A	86	47.523	Homo_sapiens
ENSCHIG00000000247	-	96	56.184	ENSAPOG00000012775	upf3b	96	56.394	Acanthochromis_polyacanthus
ENSCHIG00000000247	-	100	97.101	ENSAMEG00000000163	UPF3B	100	97.101	Ailuropoda_melanoleuca
ENSCHIG00000000247	-	90	43.694	ENSAMEG00000004259	UPF3A	92	42.694	Ailuropoda_melanoleuca
ENSCHIG00000000247	-	94	51.820	ENSACIG00000013582	upf3b	94	54.894	Amphilophus_citrinellus
ENSCHIG00000000247	-	96	54.737	ENSAOCG00000000706	upf3b	96	55.346	Amphiprion_ocellaris
ENSCHIG00000000247	-	96	53.766	ENSAPEG00000005545	upf3b	96	56.604	Amphiprion_percula
ENSCHIG00000000247	-	94	56.897	ENSATEG00000018742	upf3b	96	56.576	Anabas_testudineus
ENSCHIG00000000247	-	91	68.080	ENSACAG00000003625	UPF3B	99	64.969	Anolis_carolinensis
ENSCHIG00000000247	-	56	71.004	ENSANAG00000033169	-	93	70.260	Aotus_nancymaae
ENSCHIG00000000247	-	100	96.066	ENSANAG00000021894	-	100	97.770	Aotus_nancymaae
ENSCHIG00000000247	-	100	87.785	ENSANAG00000025598	-	100	94.690	Aotus_nancymaae
ENSCHIG00000000247	-	96	55.391	ENSACLG00000001649	upf3b	97	56.513	Astatotilapia_calliptera
ENSCHIG00000000247	-	56	60.424	ENSAMXG00000000199	upf3b	88	60.638	Astyanax_mexicanus
ENSCHIG00000000247	-	67	100.000	ENSBTAG00000035615	UPF3B	100	100.000	Bos_taurus
ENSCHIG00000000247	-	100	96.066	ENSCJAG00000004975	UPF3B	100	98.141	Callithrix_jacchus
ENSCHIG00000000247	-	100	96.273	ENSCAFG00000018426	UPF3B	100	96.273	Canis_familiaris
ENSCHIG00000000247	-	100	91.304	ENSCAFG00020004074	UPF3B	100	97.436	Canis_lupus_dingo
ENSCHIG00000000247	-	100	92.754	ENSTSYG00000014690	UPF3B	100	95.392	Carlito_syrichta
ENSCHIG00000000247	-	85	48.219	ENSCCAG00000018406	UPF3A	81	38.129	Cebus_capucinus
ENSCHIG00000000247	-	70	73.239	ENSCCAG00000021964	-	100	73.239	Cebus_capucinus
ENSCHIG00000000247	-	99	57.380	ENSCCAG00000029813	-	97	70.370	Cebus_capucinus
ENSCHIG00000000247	-	100	95.859	ENSCATG00000017506	UPF3B	100	98.141	Cercocebus_atys
ENSCHIG00000000247	-	100	90.476	ENSCLAG00000003260	UPF3B	100	90.476	Chinchilla_lanigera
ENSCHIG00000000247	-	100	95.859	ENSCSAG00000018348	UPF3B	100	95.859	Chlorocebus_sabaeus
ENSCHIG00000000247	-	99	64.155	ENSCPBG00000020685	UPF3B	93	66.370	Chrysemys_picta_bellii
ENSCHIG00000000247	-	70	98.141	ENSCANG00000029220	UPF3B	100	98.141	Colobus_angolensis_palliatus
ENSCHIG00000000247	-	75	79.396	ENSCGRG00001013643	-	94	76.667	Cricetulus_griseus_chok1gshd
ENSCHIG00000000247	-	100	80.206	ENSCGRG00001006858	-	100	80.412	Cricetulus_griseus_chok1gshd
ENSCHIG00000000247	-	89	81.524	ENSCGRG00000007627	Upf3b	100	81.755	Cricetulus_griseus_crigri
ENSCHIG00000000247	-	93	56.209	ENSCSEG00000002046	upf3b	90	57.267	Cynoglossus_semilaevis
ENSCHIG00000000247	-	96	51.951	ENSCVAG00000005030	upf3b	99	50.701	Cyprinodon_variegatus
ENSCHIG00000000247	-	93	57.511	ENSDARG00000000489	upf3b	97	56.584	Danio_rerio
ENSCHIG00000000247	-	100	94.617	ENSDNOG00000008665	UPF3B	100	94.617	Dasypus_novemcinctus
ENSCHIG00000000247	-	100	85.300	ENSDORG00000006077	Upf3b	100	85.300	Dipodomys_ordii
ENSCHIG00000000247	-	99	92.116	ENSEASG00005012919	UPF3B	100	98.230	Equus_asinus_asinus
ENSCHIG00000000247	-	90	48.993	ENSEASG00005021884	UPF3A	84	44.550	Equus_asinus_asinus
ENSCHIG00000000247	-	90	49.217	ENSECAG00000017141	UPF3A	84	44.787	Equus_caballus
ENSCHIG00000000247	-	99	92.116	ENSECAG00000016947	UPF3B	100	94.853	Equus_caballus
ENSCHIG00000000247	-	92	52.500	ENSELUG00000020389	upf3b	100	50.097	Esox_lucius
ENSCHIG00000000247	-	89	47.253	ENSFCAG00000014602	UPF3A	87	43.864	Felis_catus
ENSCHIG00000000247	-	100	95.876	ENSFCAG00000004388	UPF3B	100	95.876	Felis_catus
ENSCHIG00000000247	-	99	66.468	ENSFALG00000001569	UPF3B	99	66.004	Ficedula_albicollis
ENSCHIG00000000247	-	100	90.890	ENSFDAG00000018869	UPF3B	100	90.890	Fukomys_damarensis
ENSCHIG00000000247	-	93	52.288	ENSFHEG00000017895	upf3b	96	51.374	Fundulus_heteroclitus
ENSCHIG00000000247	-	93	54.526	ENSGMOG00000001621	upf3b	93	54.957	Gadus_morhua
ENSCHIG00000000247	-	91	67.857	ENSGALG00000008618	UPF3B	99	67.073	Gallus_gallus
ENSCHIG00000000247	-	96	53.105	ENSGAFG00000000829	upf3b	96	54.255	Gambusia_affinis
ENSCHIG00000000247	-	92	55.263	ENSGACG00000017435	upf3b	94	56.371	Gasterosteus_aculeatus
ENSCHIG00000000247	-	99	66.395	ENSGAGG00000001219	UPF3B	99	65.720	Gopherus_agassizii
ENSCHIG00000000247	-	88	39.679	ENSGGOG00000041219	-	89	36.574	Gorilla_gorilla
ENSCHIG00000000247	-	88	39.679	ENSGGOG00000043074	-	85	36.490	Gorilla_gorilla
ENSCHIG00000000247	-	89	47.297	ENSGGOG00000015428	UPF3A	86	46.548	Gorilla_gorilla
ENSCHIG00000000247	-	100	95.859	ENSGGOG00000023995	UPF3B	100	98.141	Gorilla_gorilla
ENSCHIG00000000247	-	96	55.391	ENSHBUG00000017393	upf3b	97	56.513	Haplochromis_burtoni
ENSCHIG00000000247	-	86	82.567	ENSHGLG00000011189	-	95	82.567	Heterocephalus_glaber_female
ENSCHIG00000000247	-	100	90.890	ENSHGLG00000019582	-	100	90.890	Heterocephalus_glaber_female
ENSCHIG00000000247	-	100	87.785	ENSHGLG00100002042	-	100	88.199	Heterocephalus_glaber_male
ENSCHIG00000000247	-	86	82.567	ENSHGLG00100001889	-	95	81.840	Heterocephalus_glaber_male
ENSCHIG00000000247	-	93	55.914	ENSHCOG00000017004	upf3b	93	53.879	Hippocampus_comes
ENSCHIG00000000247	-	97	55.417	ENSIPUG00000019249	upf3b	98	56.042	Ictalurus_punctatus
ENSCHIG00000000247	-	100	90.476	ENSSTOG00000001101	UPF3B	100	90.476	Ictidomys_tridecemlineatus
ENSCHIG00000000247	-	100	86.598	ENSJJAG00000000053	Upf3b	100	86.804	Jaculus_jaculus
ENSCHIG00000000247	-	96	54.043	ENSKMAG00000020300	upf3b	96	52.092	Kryptolebias_marmoratus
ENSCHIG00000000247	-	61	62.667	ENSLBEG00000028689	upf3b	59	62.667	Labrus_bergylta
ENSCHIG00000000247	-	66	38.235	ENSLACG00000006645	UPF3A	97	37.725	Latimeria_chalumnae
ENSCHIG00000000247	-	90	59.778	ENSLACG00000008691	UPF3B	100	58.517	Latimeria_chalumnae
ENSCHIG00000000247	-	52	71.373	ENSLOCG00000015238	upf3b	93	58.986	Lepisosteus_oculatus
ENSCHIG00000000247	-	90	51.663	ENSLOCG00000002665	upf3a	91	46.813	Lepisosteus_oculatus
ENSCHIG00000000247	-	89	42.857	ENSLAFG00000023358	UPF3A	99	42.494	Loxodonta_africana
ENSCHIG00000000247	-	100	91.304	ENSLAFG00000001267	UPF3B	100	91.304	Loxodonta_africana
ENSCHIG00000000247	-	100	95.652	ENSMFAG00000045414	UPF3B	100	98.141	Macaca_fascicularis
ENSCHIG00000000247	-	100	95.652	ENSMMUG00000020222	UPF3B	100	98.141	Macaca_mulatta
ENSCHIG00000000247	-	100	95.652	ENSMNEG00000039794	UPF3B	100	98.141	Macaca_nemestrina
ENSCHIG00000000247	-	100	95.859	ENSMLEG00000010999	UPF3B	100	98.141	Mandrillus_leucophaeus
ENSCHIG00000000247	-	96	55.063	ENSMZEG00005007871	upf3b	97	56.184	Maylandia_zebra
ENSCHIG00000000247	-	81	66.584	ENSMGAG00000007728	UPF3B	99	67.830	Meleagris_gallopavo
ENSCHIG00000000247	-	86	49.884	ENSMGAG00000014837	UPF3A	99	44.159	Meleagris_gallopavo
ENSCHIG00000000247	-	100	83.093	ENSMAUG00000008705	Upf3b	100	83.299	Mesocricetus_auratus
ENSCHIG00000000247	-	70	98.148	ENSMICG00000001743	UPF3B	100	98.148	Microcebus_murinus
ENSCHIG00000000247	-	100	84.948	ENSMOCG00000017893	Upf3b	100	85.155	Microtus_ochrogaster
ENSCHIG00000000247	-	96	53.263	ENSMMOG00000004183	upf3b	96	53.992	Mola_mola
ENSCHIG00000000247	-	88	51.131	ENSMODG00000003159	UPF3A	96	49.888	Monodelphis_domestica
ENSCHIG00000000247	-	89	72.437	ENSMODG00000010232	UPF3B	99	72.374	Monodelphis_domestica
ENSCHIG00000000247	-	60	65.085	ENSMALG00000008042	upf3b	96	54.697	Monopterus_albus
ENSCHIG00000000247	-	100	81.237	MGP_CAROLIEiJ_G0032999	Upf3b	100	81.443	Mus_caroli
ENSCHIG00000000247	-	100	81.443	ENSMUSG00000036572	Upf3b	100	81.649	Mus_musculus
ENSCHIG00000000247	-	100	80.412	MGP_PahariEiJ_G0031543	Upf3b	100	80.619	Mus_pahari
ENSCHIG00000000247	-	100	81.443	MGP_SPRETEiJ_G0034152	Upf3b	100	81.649	Mus_spretus
ENSCHIG00000000247	-	98	93.432	ENSMPUG00000001531	UPF3B	100	93.432	Mustela_putorius_furo
ENSCHIG00000000247	-	100	93.168	ENSMLUG00000010821	UPF3B	100	93.168	Myotis_lucifugus
ENSCHIG00000000247	-	100	81.031	ENSNGAG00000008231	Upf3b	100	82.268	Nannospalax_galili
ENSCHIG00000000247	-	97	95.957	ENSNLEG00000014897	UPF3B	100	95.859	Nomascus_leucogenys
ENSCHIG00000000247	-	85	48.104	ENSNLEG00000007563	UPF3A	82	44.175	Nomascus_leucogenys
ENSCHIG00000000247	-	64	84.516	ENSMEUG00000015615	UPF3B	81	84.615	Notamacropus_eugenii
ENSCHIG00000000247	-	100	84.679	ENSODEG00000002186	-	100	84.472	Octodon_degus
ENSCHIG00000000247	-	100	55.556	ENSONIG00000002536	upf3b	100	57.056	Oreochromis_niloticus
ENSCHIG00000000247	-	89	64.237	ENSOANG00000002594	-	99	64.237	Ornithorhynchus_anatinus
ENSCHIG00000000247	-	100	94.617	ENSOCUG00000010213	UPF3B	100	94.617	Oryctolagus_cuniculus
ENSCHIG00000000247	-	84	51.415	ENSORLG00000010911	upf3a	82	45.863	Oryzias_latipes
ENSCHIG00000000247	-	94	55.579	ENSORLG00000001026	upf3b	94	55.579	Oryzias_latipes
ENSCHIG00000000247	-	94	54.915	ENSORLG00020003758	upf3b	94	55.128	Oryzias_latipes_hni
ENSCHIG00000000247	-	87	44.170	ENSORLG00020014317	upf3a	82	50.356	Oryzias_latipes_hni
ENSCHIG00000000247	-	94	54.936	ENSORLG00015012954	upf3b	94	54.936	Oryzias_latipes_hsok
ENSCHIG00000000247	-	87	54.128	ENSOMEG00000014736	upf3b	98	54.321	Oryzias_melastigma
ENSCHIG00000000247	-	100	91.718	ENSOGAG00000004643	-	100	91.718	Otolemur_garnettii
ENSCHIG00000000247	-	98	78.436	ENSOGAG00000033003	-	100	78.858	Otolemur_garnettii
ENSCHIG00000000247	-	100	99.383	ENSOARG00000016051	-	100	99.383	Ovis_aries
ENSCHIG00000000247	-	90	47.333	ENSOARG00000009004	UPF3A	83	44.604	Ovis_aries
ENSCHIG00000000247	-	90	70.413	ENSOARG00000007869	-	99	67.506	Ovis_aries
ENSCHIG00000000247	-	100	95.859	ENSPPAG00000040390	UPF3B	100	98.141	Pan_paniscus
ENSCHIG00000000247	-	89	47.072	ENSPPAG00000042267	UPF3A	86	47.072	Pan_paniscus
ENSCHIG00000000247	-	91	46.855	ENSPPRG00000025062	UPF3A	87	44.318	Panthera_pardus
ENSCHIG00000000247	-	100	96.273	ENSPPRG00000023536	UPF3B	100	96.273	Panthera_pardus
ENSCHIG00000000247	-	100	92.153	ENSPTIG00000015264	UPF3B	100	93.360	Panthera_tigris_altaica
ENSCHIG00000000247	-	100	95.859	ENSPTRG00000022228	UPF3B	100	98.141	Pan_troglodytes
ENSCHIG00000000247	-	89	47.072	ENSPTRG00000006073	UPF3A	85	45.805	Pan_troglodytes
ENSCHIG00000000247	-	100	95.859	ENSPANG00000000900	UPF3B	100	98.141	Papio_anubis
ENSCHIG00000000247	-	93	55.054	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSCHIG00000000247	-	56	71.636	ENSPSIG00000005833	UPF3B	92	71.691	Pelodiscus_sinensis
ENSCHIG00000000247	-	85	52.632	ENSPSIG00000007468	UPF3A	98	51.259	Pelodiscus_sinensis
ENSCHIG00000000247	-	56	67.273	ENSPMGG00000016067	upf3b	94	67.029	Periophthalmus_magnuspinnatus
ENSCHIG00000000247	-	100	86.008	ENSPEMG00000012352	Upf3b	100	86.214	Peromyscus_maniculatus_bairdii
ENSCHIG00000000247	-	93	68.640	ENSPCIG00000028914	UPF3B	92	67.849	Phascolarctos_cinereus
ENSCHIG00000000247	-	85	49.833	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSCHIG00000000247	-	96	54.604	ENSPLAG00000005105	upf3b	96	55.462	Poecilia_latipinna
ENSCHIG00000000247	-	96	54.604	ENSPLAG00000019922	upf3b	96	55.462	Poecilia_latipinna
ENSCHIG00000000247	-	50	68.354	ENSPLAG00000011960	upf3a	83	49.882	Poecilia_latipinna
ENSCHIG00000000247	-	96	54.818	ENSPMEG00000023532	upf3b	96	55.957	Poecilia_mexicana
ENSCHIG00000000247	-	69	98.227	ENSPPYG00000020675	-	100	98.227	Pongo_abelii
ENSCHIG00000000247	-	89	47.072	ENSPPYG00000005536	UPF3A	86	47.072	Pongo_abelii
ENSCHIG00000000247	-	100	92.961	ENSPCAG00000009464	UPF3B	100	92.961	Procavia_capensis
ENSCHIG00000000247	-	100	95.248	ENSPCOG00000021960	UPF3B	100	98.148	Propithecus_coquereli
ENSCHIG00000000247	-	100	82.402	ENSPVAG00000014075	UPF3B	100	82.402	Pteropus_vampyrus
ENSCHIG00000000247	-	87	45.309	ENSPVAG00000005656	UPF3A	85	39.503	Pteropus_vampyrus
ENSCHIG00000000247	-	96	55.839	ENSPNYG00000009846	upf3b	96	56.962	Pundamilia_nyererei
ENSCHIG00000000247	-	98	54.694	ENSPNAG00000021528	upf3b	99	55.306	Pygocentrus_nattereri
ENSCHIG00000000247	-	100	84.742	ENSRNOG00000039994	Upf3b	100	84.948	Rattus_norvegicus
ENSCHIG00000000247	-	82	93.199	ENSRBIG00000037219	UPF3B	100	93.199	Rhinopithecus_bieti
ENSCHIG00000000247	-	100	95.859	ENSRROG00000041031	UPF3B	100	98.141	Rhinopithecus_roxellana
ENSCHIG00000000247	-	100	95.445	ENSSBOG00000019740	UPF3B	100	97.398	Saimiri_boliviensis_boliviensis
ENSCHIG00000000247	-	76	46.053	ENSSBOG00000029989	UPF3A	80	41.223	Saimiri_boliviensis_boliviensis
ENSCHIG00000000247	-	88	72.390	ENSSHAG00000008634	UPF3B	99	67.835	Sarcophilus_harrisii
ENSCHIG00000000247	-	88	50.340	ENSSHAG00000009895	UPF3A	98	49.103	Sarcophilus_harrisii
ENSCHIG00000000247	-	100	56.998	ENSSFOG00015005614	upf3b	100	57.841	Scleropages_formosus
ENSCHIG00000000247	-	93	54.292	ENSSMAG00000012913	upf3b	84	68.248	Scophthalmus_maximus
ENSCHIG00000000247	-	60	71.166	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSCHIG00000000247	-	96	50.526	ENSSDUG00000005682	upf3b	97	51.674	Seriola_dumerili
ENSCHIG00000000247	-	96	53.445	ENSSLDG00000003130	upf3b	97	51.883	Seriola_lalandi_dorsalis
ENSCHIG00000000247	-	89	86.406	ENSSARG00000004147	UPF3B	100	86.406	Sorex_araneus
ENSCHIG00000000247	-	99	64.516	ENSSPUG00000013082	UPF3B	99	62.903	Sphenodon_punctatus
ENSCHIG00000000247	-	96	54.430	ENSSPAG00000009989	upf3b	96	55.789	Stegastes_partitus
ENSCHIG00000000247	-	100	94.410	ENSSSCG00000012617	UPF3B	100	94.410	Sus_scrofa
ENSCHIG00000000247	-	89	68.864	ENSTGUG00000003413	UPF3B	99	69.091	Taeniopygia_guttata
ENSCHIG00000000247	-	84	53.589	ENSTGUG00000009493	UPF3A	99	52.745	Taeniopygia_guttata
ENSCHIG00000000247	-	87	55.841	ENSTRUG00000010645	upf3b	98	54.393	Takifugu_rubripes
ENSCHIG00000000247	-	94	52.155	ENSTNIG00000015763	upf3b	93	51.474	Tetraodon_nigroviridis
ENSCHIG00000000247	-	100	79.296	ENSTBEG00000003229	UPF3B	100	79.296	Tupaia_belangeri
ENSCHIG00000000247	-	100	90.103	ENSUAMG00000024565	UPF3B	100	95.575	Ursus_americanus
ENSCHIG00000000247	-	93	84.906	ENSUMAG00000002150	UPF3B	99	84.277	Ursus_maritimus
ENSCHIG00000000247	-	85	97.073	ENSVPAG00000009971	UPF3B	100	97.073	Vicugna_pacos
ENSCHIG00000000247	-	100	91.097	ENSVVUG00000011594	UPF3B	100	96.581	Vulpes_vulpes
ENSCHIG00000000247	-	84	45.192	ENSXETG00000002572	upf3a	90	45.192	Xenopus_tropicalis
ENSCHIG00000000247	-	87	54.734	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSCHIG00000000247	-	93	52.402	ENSXCOG00000016586	upf3b	97	66.197	Xiphophorus_couchianus
ENSCHIG00000000247	-	60	68.153	ENSXMAG00000013452	upf3a	82	45.843	Xiphophorus_maculatus
ENSCHIG00000000247	-	99	53.183	ENSXMAG00000013680	upf3b	96	54.468	Xiphophorus_maculatus