EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000002609 (Gene tree)
Gene ID: 102177639
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 16198 bases
Position: chr13:58049709-58065906
Accession: 102177639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000001339	RRM_1	PF00076.22	5.6e-18	1	1
ENSCHIP00000001349	RRM_1	PF00076.22	5.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000003686	RBM38-201	2684	XM_018057629	ENSCHIP00000001339	239 (aa)	XP_017913118	UPI000847627B
ENSCHIT00000003760	RBM38-202	729	-	ENSCHIP00000001349	242 (aa)	-	UPI000D19066F

Gene Model

Click here to download ENSCHIG00000002609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000002609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000002609	RBM38	90	58.974	ENSCHIG00000013536	RBM24	100	63.136
ENSCHIG00000002609	RBM38	50	38.235	ENSCHIG00000015099	-	81	38.235
ENSCHIG00000002609	RBM38	50	43.038	ENSCHIG00000015823	-	72	32.353

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000002609	RBM38	100	94.561	ENSG00000132819	RBM38	100	96.694	Homo_sapiens
ENSCHIG00000002609	RBM38	89	58.621	ENSAPOG00000003301	rbm38	91	58.621	Acanthochromis_polyacanthus
ENSCHIG00000002609	RBM38	91	66.216	ENSAPOG00000009939	-	94	66.667	Acanthochromis_polyacanthus
ENSCHIG00000002609	RBM38	89	68.807	ENSACIG00000012502	-	100	86.325	Amphilophus_citrinellus
ENSCHIG00000002609	RBM38	89	56.652	ENSACIG00000000010	rbm38	91	56.652	Amphilophus_citrinellus
ENSCHIG00000002609	RBM38	89	58.621	ENSAOCG00000013497	-	91	58.621	Amphiprion_ocellaris
ENSCHIG00000002609	RBM38	99	62.963	ENSAOCG00000012559	RBM38	99	63.115	Amphiprion_ocellaris
ENSCHIG00000002609	RBM38	91	62.025	ENSAPEG00000023581	-	95	63.291	Amphiprion_percula
ENSCHIG00000002609	RBM38	99	59.426	ENSAPEG00000013137	rbm38	99	59.426	Amphiprion_percula
ENSCHIG00000002609	RBM38	90	61.504	ENSATEG00000016366	rbm38	94	61.504	Anabas_testudineus
ENSCHIG00000002609	RBM38	89	63.478	ENSATEG00000016710	-	92	64.502	Anabas_testudineus
ENSCHIG00000002609	RBM38	91	77.727	ENSACAG00000016238	RBM38	97	74.153	Anolis_carolinensis
ENSCHIG00000002609	RBM38	90	93.981	ENSANAG00000031959	RBM38	100	97.521	Aotus_nancymaae
ENSCHIG00000002609	RBM38	89	65.652	ENSACLG00000019514	-	92	65.801	Astatotilapia_calliptera
ENSCHIG00000002609	RBM38	91	66.234	ENSAMXG00000015601	-	95	66.957	Astyanax_mexicanus
ENSCHIG00000002609	RBM38	88	56.306	ENSAMXG00000038120	rbm38	92	56.757	Astyanax_mexicanus
ENSCHIG00000002609	RBM38	100	98.326	ENSBTAG00000008105	RBM38	100	98.326	Bos_taurus
ENSCHIG00000002609	RBM38	54	64.615	WBGene00006321	sup-12	59	84.270	Caenorhabditis_elegans
ENSCHIG00000002609	RBM38	100	93.724	ENSCJAG00000019139	RBM38	100	97.521	Callithrix_jacchus
ENSCHIG00000002609	RBM38	100	94.561	ENSCAFG00020021943	RBM38	100	94.561	Canis_lupus_dingo
ENSCHIG00000002609	RBM38	100	93.305	ENSCPOG00000012781	RBM38	100	93.305	Cavia_porcellus
ENSCHIG00000002609	RBM38	100	93.724	ENSCCAG00000036872	RBM38	100	97.521	Cebus_capucinus
ENSCHIG00000002609	RBM38	100	94.561	ENSCATG00000032133	RBM38	100	97.521	Cercocebus_atys
ENSCHIG00000002609	RBM38	96	93.043	ENSCLAG00000005906	RBM38	100	93.043	Chinchilla_lanigera
ENSCHIG00000002609	RBM38	100	94.561	ENSCSAG00000015503	RBM38	100	94.561	Chlorocebus_sabaeus
ENSCHIG00000002609	RBM38	90	79.817	ENSCPBG00000024059	RBM38	100	79.817	Chrysemys_picta_bellii
ENSCHIG00000002609	RBM38	63	61.392	ENSCING00000025102	-	68	61.392	Ciona_intestinalis
ENSCHIG00000002609	RBM38	64	62.658	ENSCSAVG00000001132	-	59	62.658	Ciona_savignyi
ENSCHIG00000002609	RBM38	99	73.109	ENSCANG00000030105	-	89	73.109	Colobus_angolensis_palliatus
ENSCHIG00000002609	RBM38	100	89.540	ENSCGRG00001012928	Rbm38	100	89.540	Cricetulus_griseus_chok1gshd
ENSCHIG00000002609	RBM38	69	61.905	ENSCSEG00000020943	rbm38	65	56.500	Cynoglossus_semilaevis
ENSCHIG00000002609	RBM38	89	68.807	ENSCSEG00000004701	-	93	69.406	Cynoglossus_semilaevis
ENSCHIG00000002609	RBM38	92	62.753	ENSCVAG00000005472	-	99	63.158	Cyprinodon_variegatus
ENSCHIG00000002609	RBM38	88	58.190	ENSCVAG00000015952	rbm38	91	59.227	Cyprinodon_variegatus
ENSCHIG00000002609	RBM38	88	63.839	ENSDARG00000058818	rbm38	92	63.839	Danio_rerio
ENSCHIG00000002609	RBM38	90	87.500	ENSDNOG00000032004	RBM38	100	87.500	Dasypus_novemcinctus
ENSCHIG00000002609	RBM38	61	65.772	ENSEBUG00000015164	rbm38	88	65.772	Eptatretus_burgeri
ENSCHIG00000002609	RBM38	100	94.561	ENSECAG00000007700	RBM38	100	94.561	Equus_caballus
ENSCHIG00000002609	RBM38	100	91.250	ENSEEUG00000013489	RBM38	100	92.500	Erinaceus_europaeus
ENSCHIG00000002609	RBM38	90	64.831	ENSELUG00000005849	-	95	64.831	Esox_lucius
ENSCHIG00000002609	RBM38	81	65.464	ENSELUG00000000585	-	84	65.464	Esox_lucius
ENSCHIG00000002609	RBM38	100	95.816	ENSFCAG00000042916	RBM38	100	98.347	Felis_catus
ENSCHIG00000002609	RBM38	74	81.461	ENSFALG00000010805	RBM38	99	78.125	Ficedula_albicollis
ENSCHIG00000002609	RBM38	89	57.511	ENSFHEG00000017748	rbm38	91	57.511	Fundulus_heteroclitus
ENSCHIG00000002609	RBM38	92	67.965	ENSFHEG00000006160	-	99	67.965	Fundulus_heteroclitus
ENSCHIG00000002609	RBM38	75	70.166	ENSGMOG00000016655	-	96	73.077	Gadus_morhua
ENSCHIG00000002609	RBM38	90	78.440	ENSGALG00000026081	RBM38	100	77.982	Gallus_gallus
ENSCHIG00000002609	RBM38	89	62.264	ENSGACG00000015224	rbm38	98	62.264	Gasterosteus_aculeatus
ENSCHIG00000002609	RBM38	90	66.216	ENSGACG00000009873	-	100	65.919	Gasterosteus_aculeatus
ENSCHIG00000002609	RBM38	90	80.275	ENSGAGG00000001187	RBM38	100	80.275	Gopherus_agassizii
ENSCHIG00000002609	RBM38	89	69.585	ENSHBUG00000011778	-	92	69.725	Haplochromis_burtoni
ENSCHIG00000002609	RBM38	89	60.092	ENSHBUG00000012058	rbm38	89	60.092	Haplochromis_burtoni
ENSCHIG00000002609	RBM38	100	90.377	ENSHGLG00000015077	RBM38	100	90.377	Heterocephalus_glaber_female
ENSCHIG00000002609	RBM38	79	70.833	ENSHCOG00000005622	-	54	71.354	Hippocampus_comes
ENSCHIG00000002609	RBM38	63	66.887	ENSHCOG00000019040	rbm38	65	66.887	Hippocampus_comes
ENSCHIG00000002609	RBM38	91	65.236	ENSIPUG00000019349	-	95	65.236	Ictalurus_punctatus
ENSCHIG00000002609	RBM38	88	53.846	ENSKMAG00000012402	rbm38	98	54.274	Kryptolebias_marmoratus
ENSCHIG00000002609	RBM38	89	68.664	ENSLBEG00000016163	RBM38	97	63.927	Labrus_bergylta
ENSCHIG00000002609	RBM38	89	57.940	ENSLBEG00000018878	rbm38	91	57.940	Labrus_bergylta
ENSCHIG00000002609	RBM38	91	70.667	ENSLOCG00000003456	rbm38	95	70.667	Lepisosteus_oculatus
ENSCHIG00000002609	RBM38	98	94.468	ENSMFAG00000043808	RBM38	97	97.436	Macaca_fascicularis
ENSCHIG00000002609	RBM38	100	94.561	ENSMMUG00000031391	RBM38	100	97.521	Macaca_mulatta
ENSCHIG00000002609	RBM38	100	94.561	ENSMNEG00000034683	RBM38	100	97.521	Macaca_nemestrina
ENSCHIG00000002609	RBM38	89	59.227	ENSMAMG00000024135	rbm38	91	59.227	Mastacembelus_armatus
ENSCHIG00000002609	RBM38	91	62.869	ENSMAMG00000020499	RBM38	95	64.407	Mastacembelus_armatus
ENSCHIG00000002609	RBM38	89	56.652	ENSMZEG00005026036	rbm38	91	56.652	Maylandia_zebra
ENSCHIG00000002609	RBM38	89	69.585	ENSMZEG00005000849	-	92	69.725	Maylandia_zebra
ENSCHIG00000002609	RBM38	100	90.377	ENSMAUG00000021211	Rbm38	100	90.377	Mesocricetus_auratus
ENSCHIG00000002609	RBM38	90	94.907	ENSMICG00000038011	RBM38	100	94.907	Microcebus_murinus
ENSCHIG00000002609	RBM38	100	89.121	ENSMOCG00000008715	Rbm38	100	89.121	Microtus_ochrogaster
ENSCHIG00000002609	RBM38	99	64.583	ENSMMOG00000020051	-	99	64.730	Mola_mola
ENSCHIG00000002609	RBM38	100	78.008	ENSMODG00000016458	RBM38	100	78.008	Monodelphis_domestica
ENSCHIG00000002609	RBM38	77	71.958	ENSMALG00000004680	RBM38	70	71.958	Monopterus_albus
ENSCHIG00000002609	RBM38	90	56.621	ENSMALG00000022327	rbm38	93	57.080	Monopterus_albus
ENSCHIG00000002609	RBM38	100	89.958	MGP_CAROLIEiJ_G0024745	Rbm38	100	89.958	Mus_caroli
ENSCHIG00000002609	RBM38	100	90.377	ENSMUSG00000027510	Rbm38	100	90.377	Mus_musculus
ENSCHIG00000002609	RBM38	100	89.540	MGP_PahariEiJ_G0026186	Rbm38	100	89.540	Mus_pahari
ENSCHIG00000002609	RBM38	100	89.958	MGP_SPRETEiJ_G0025665	Rbm38	100	89.958	Mus_spretus
ENSCHIG00000002609	RBM38	77	97.297	ENSMPUG00000006518	RBM38	93	97.326	Mustela_putorius_furo
ENSCHIG00000002609	RBM38	90	91.204	ENSMLUG00000011140	RBM38	100	91.204	Myotis_lucifugus
ENSCHIG00000002609	RBM38	89	65.652	ENSNBRG00000022545	-	92	65.801	Neolamprologus_brichardi
ENSCHIG00000002609	RBM38	89	60.731	ENSNBRG00000022685	rbm38	89	60.731	Neolamprologus_brichardi
ENSCHIG00000002609	RBM38	58	76.812	ENSMEUG00000005475	-	100	76.812	Notamacropus_eugenii
ENSCHIG00000002609	RBM38	100	93.305	ENSODEG00000007980	RBM38	100	93.305	Octodon_degus
ENSCHIG00000002609	RBM38	88	57.759	ENSONIG00000017073	rbm38	93	57.759	Oreochromis_niloticus
ENSCHIG00000002609	RBM38	88	65.502	ENSONIG00000020324	-	92	65.652	Oreochromis_niloticus
ENSCHIG00000002609	RBM38	97	76.724	ENSOANG00000009259	RBM38	90	75.847	Ornithorhynchus_anatinus
ENSCHIG00000002609	RBM38	89	55.128	ENSORLG00000012154	rbm38	91	54.274	Oryzias_latipes
ENSCHIG00000002609	RBM38	92	61.290	ENSORLG00000027180	-	99	62.249	Oryzias_latipes
ENSCHIG00000002609	RBM38	95	60.392	ENSORLG00020020751	-	99	62.249	Oryzias_latipes_hni
ENSCHIG00000002609	RBM38	89	55.128	ENSORLG00020017871	rbm38	91	55.128	Oryzias_latipes_hni
ENSCHIG00000002609	RBM38	92	60.729	ENSORLG00015017040	-	99	62.500	Oryzias_latipes_hsok
ENSCHIG00000002609	RBM38	97	57.872	ENSORLG00015012606	rbm38	97	57.872	Oryzias_latipes_hsok
ENSCHIG00000002609	RBM38	81	60.914	ENSOMEG00000006805	rbm38	77	60.914	Oryzias_melastigma
ENSCHIG00000002609	RBM38	92	59.350	ENSOMEG00000023912	-	99	60.729	Oryzias_melastigma
ENSCHIG00000002609	RBM38	100	94.167	ENSOGAG00000029136	RBM38	100	94.167	Otolemur_garnettii
ENSCHIG00000002609	RBM38	100	95.816	ENSPPRG00000009507	RBM38	100	98.347	Panthera_pardus
ENSCHIG00000002609	RBM38	86	92.233	ENSPTRG00000013661	RBM38	100	96.694	Pan_troglodytes
ENSCHIG00000002609	RBM38	52	96.774	ENSPTRG00000045845	-	68	96.774	Pan_troglodytes
ENSCHIG00000002609	RBM38	100	94.561	ENSPANG00000020919	-	100	97.521	Papio_anubis
ENSCHIG00000002609	RBM38	99	71.849	ENSPANG00000033127	-	100	71.849	Papio_anubis
ENSCHIG00000002609	RBM38	91	66.520	ENSPKIG00000018122	-	100	86.325	Paramormyrops_kingsleyae
ENSCHIG00000002609	RBM38	94	62.295	ENSPKIG00000025417	rbm38	98	62.295	Paramormyrops_kingsleyae
ENSCHIG00000002609	RBM38	93	78.125	ENSPSIG00000011649	RBM38	95	78.125	Pelodiscus_sinensis
ENSCHIG00000002609	RBM38	90	55.882	ENSPMGG00000011343	rbm38	94	57.143	Periophthalmus_magnuspinnatus
ENSCHIG00000002609	RBM38	89	61.538	ENSPMGG00000017094	-	92	62.661	Periophthalmus_magnuspinnatus
ENSCHIG00000002609	RBM38	100	78.008	ENSPCIG00000013648	RBM38	100	78.008	Phascolarctos_cinereus
ENSCHIG00000002609	RBM38	89	55.556	ENSPFOG00000011658	rbm38	91	58.547	Poecilia_formosa
ENSCHIG00000002609	RBM38	92	63.347	ENSPLAG00000002500	-	99	65.079	Poecilia_latipinna
ENSCHIG00000002609	RBM38	89	56.410	ENSPLAG00000005218	rbm38	91	58.547	Poecilia_latipinna
ENSCHIG00000002609	RBM38	89	55.556	ENSPMEG00000015770	rbm38	91	58.547	Poecilia_mexicana
ENSCHIG00000002609	RBM38	89	55.983	ENSPREG00000007398	rbm38	91	58.974	Poecilia_reticulata
ENSCHIG00000002609	RBM38	100	93.333	ENSPCOG00000026201	RBM38	100	96.721	Propithecus_coquereli
ENSCHIG00000002609	RBM38	74	96.203	ENSPVAG00000006457	RBM38	75	96.203	Pteropus_vampyrus
ENSCHIG00000002609	RBM38	89	69.585	ENSPNYG00000019727	-	100	87.179	Pundamilia_nyererei
ENSCHIG00000002609	RBM38	89	60.185	ENSPNYG00000021373	rbm38	89	61.187	Pundamilia_nyererei
ENSCHIG00000002609	RBM38	89	62.054	ENSPNAG00000010596	rbm38	93	62.054	Pygocentrus_nattereri
ENSCHIG00000002609	RBM38	91	65.652	ENSPNAG00000015123	-	96	75.758	Pygocentrus_nattereri
ENSCHIG00000002609	RBM38	100	89.958	ENSRNOG00000006420	Rbm38	100	89.958	Rattus_norvegicus
ENSCHIG00000002609	RBM38	100	77.824	ENSRROG00000036388	-	100	77.824	Rhinopithecus_roxellana
ENSCHIG00000002609	RBM38	90	93.056	ENSSBOG00000031053	RBM38	99	98.113	Saimiri_boliviensis_boliviensis
ENSCHIG00000002609	RBM38	93	64.069	ENSSFOG00015004453	rbm38	94	67.100	Scleropages_formosus
ENSCHIG00000002609	RBM38	89	64.069	ENSSDUG00000021082	RBM38	92	64.935	Seriola_dumerili
ENSCHIG00000002609	RBM38	89	59.227	ENSSDUG00000022611	rbm38	91	59.227	Seriola_dumerili
ENSCHIG00000002609	RBM38	97	60.000	ENSSLDG00000010845	rbm38	97	60.000	Seriola_lalandi_dorsalis
ENSCHIG00000002609	RBM38	89	64.069	ENSSLDG00000011778	RBM38	92	64.935	Seriola_lalandi_dorsalis
ENSCHIG00000002609	RBM38	89	57.940	ENSSPAG00000011113	rbm38	91	57.940	Stegastes_partitus
ENSCHIG00000002609	RBM38	89	66.197	ENSSPAG00000020989	RBM38	91	66.822	Stegastes_partitus
ENSCHIG00000002609	RBM38	100	95.816	ENSSSCG00000007504	RBM38	100	95.816	Sus_scrofa
ENSCHIG00000002609	RBM38	89	65.368	ENSTRUG00000019869	-	92	66.810	Takifugu_rubripes
ENSCHIG00000002609	RBM38	89	55.895	ENSTRUG00000024954	rbm38	91	55.895	Takifugu_rubripes
ENSCHIG00000002609	RBM38	89	68.182	ENSTNIG00000007093	-	97	68.778	Tetraodon_nigroviridis
ENSCHIG00000002609	RBM38	50	89.916	ENSTBEG00000001689	-	50	89.916	Tupaia_belangeri
ENSCHIG00000002609	RBM38	100	94.979	ENSUAMG00000019780	RBM38	100	94.979	Ursus_americanus
ENSCHIG00000002609	RBM38	100	94.561	ENSVVUG00000017246	RBM38	100	94.561	Vulpes_vulpes
ENSCHIG00000002609	RBM38	90	72.523	ENSXETG00000011268	rbm38	99	73.874	Xenopus_tropicalis
ENSCHIG00000002609	RBM38	50	77.444	ENSXCOG00000017324	-	60	77.444	Xiphophorus_couchianus
ENSCHIG00000002609	RBM38	89	57.940	ENSXMAG00000023662	rbm38	91	58.798	Xiphophorus_maculatus