EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000002873 (Gene tree)
Gene ID: 102179584
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 34353 bases
Position: chr16:53818490-53852842
Accession: 102179584
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000001497	zf-CCCH	PF00642.24	0.00024	1	1
ENSCHIP00000001488	zf-CCCH	PF00642.24	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000004192	RC3H1-201	3566	XM_005690899	ENSCHIP00000001488	1123 (aa)	XP_005690956	UPI0003AF5850
ENSCHIT00000004213	RC3H1-202	3363	-	ENSCHIP00000001497	1120 (aa)	-	UPI000D191926

Gene Model

Click here to download ENSCHIG00000002873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000002873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000002873	RC3H1	98	53.038	ENSCHIG00000019319	RC3H2	93	53.274

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000002873	RC3H1	100	96.889	ENSG00000135870	RC3H1	100	96.889	Homo_sapiens
ENSCHIG00000002873	RC3H1	100	95.936	ENSAMEG00000015657	RC3H1	100	95.936	Ailuropoda_melanoleuca
ENSCHIG00000002873	RC3H1	100	87.522	ENSAPLG00000005341	RC3H1	100	86.987	Anas_platyrhynchos
ENSCHIG00000002873	RC3H1	100	84.367	ENSACAG00000015271	RC3H1	100	83.990	Anolis_carolinensis
ENSCHIG00000002873	RC3H1	100	96.205	ENSANAG00000036716	RC3H1	100	96.205	Aotus_nancymaae
ENSCHIG00000002873	RC3H1	100	98.754	ENSBTAG00000052708	RC3H1	100	98.754	Bos_taurus
ENSCHIG00000002873	RC3H1	100	95.852	ENSCJAG00000009106	RC3H1	100	95.852	Callithrix_jacchus
ENSCHIG00000002873	RC3H1	100	96.290	ENSCAFG00000014434	RC3H1	100	96.290	Canis_familiaris
ENSCHIG00000002873	RC3H1	100	96.205	ENSCAFG00020017112	RC3H1	99	97.753	Canis_lupus_dingo
ENSCHIG00000002873	RC3H1	99	94.341	ENSTSYG00000003913	RC3H1	99	94.341	Carlito_syrichta
ENSCHIG00000002873	RC3H1	100	90.644	ENSCPOG00000004349	RC3H1	100	90.380	Cavia_porcellus
ENSCHIG00000002873	RC3H1	100	94.737	ENSCCAG00000025652	RC3H1	99	95.940	Cebus_capucinus
ENSCHIG00000002873	RC3H1	100	96.381	ENSCATG00000033497	RC3H1	100	96.381	Cercocebus_atys
ENSCHIG00000002873	RC3H1	100	94.086	ENSCLAG00000011267	RC3H1	100	94.086	Chinchilla_lanigera
ENSCHIG00000002873	RC3H1	96	96.317	ENSCSAG00000011823	RC3H1	85	96.317	Chlorocebus_sabaeus
ENSCHIG00000002873	RC3H1	100	89.025	ENSCPBG00000014670	RC3H1	100	88.586	Chrysemys_picta_bellii
ENSCHIG00000002873	RC3H1	100	96.384	ENSCANG00000032120	RC3H1	100	96.384	Colobus_angolensis_palliatus
ENSCHIG00000002873	RC3H1	100	93.375	ENSCGRG00001020812	Rc3h1	100	92.933	Cricetulus_griseus_chok1gshd
ENSCHIG00000002873	RC3H1	100	93.375	ENSCGRG00000011952	Rc3h1	100	92.933	Cricetulus_griseus_crigri
ENSCHIG00000002873	RC3H1	56	94.695	ENSDNOG00000011494	RC3H1	99	95.000	Dasypus_novemcinctus
ENSCHIG00000002873	RC3H1	100	94.788	ENSDORG00000004855	Rc3h1	100	94.788	Dipodomys_ordii
ENSCHIG00000002873	RC3H1	82	95.928	ENSETEG00000012064	RC3H1	87	95.928	Echinops_telfairi
ENSCHIG00000002873	RC3H1	100	96.527	ENSEASG00005017000	RC3H1	100	96.527	Equus_asinus_asinus
ENSCHIG00000002873	RC3H1	100	96.349	ENSECAG00000021208	RC3H1	100	96.349	Equus_caballus
ENSCHIG00000002873	RC3H1	89	82.560	ENSEEUG00000014861	RC3H1	93	82.560	Erinaceus_europaeus
ENSCHIG00000002873	RC3H1	100	96.381	ENSFCAG00000014924	RC3H1	100	96.381	Felis_catus
ENSCHIG00000002873	RC3H1	100	86.713	ENSFALG00000002947	RC3H1	100	85.564	Ficedula_albicollis
ENSCHIG00000002873	RC3H1	100	94.616	ENSFDAG00000013303	RC3H1	100	94.616	Fukomys_damarensis
ENSCHIG00000002873	RC3H1	100	87.975	ENSGALG00000004587	RC3H1	100	87.434	Gallus_gallus
ENSCHIG00000002873	RC3H1	100	88.496	ENSGAGG00000018194	RC3H1	100	88.407	Gopherus_agassizii
ENSCHIG00000002873	RC3H1	100	90.186	ENSGGOG00000005735	RC3H1	100	90.186	Gorilla_gorilla
ENSCHIG00000002873	RC3H1	88	88.633	ENSHGLG00000004183	-	99	88.587	Heterocephalus_glaber_female
ENSCHIG00000002873	RC3H1	100	94.086	ENSHGLG00100008577	RC3H1	100	94.086	Heterocephalus_glaber_male
ENSCHIG00000002873	RC3H1	100	95.587	ENSSTOG00000016033	RC3H1	100	95.587	Ictidomys_tridecemlineatus
ENSCHIG00000002873	RC3H1	100	93.993	ENSJJAG00000018915	Rc3h1	100	93.728	Jaculus_jaculus
ENSCHIG00000002873	RC3H1	100	74.413	ENSLACG00000016186	RC3H1	100	77.568	Latimeria_chalumnae
ENSCHIG00000002873	RC3H1	97	96.080	ENSLAFG00000004367	RC3H1	100	96.080	Loxodonta_africana
ENSCHIG00000002873	RC3H1	100	96.293	ENSMFAG00000033725	RC3H1	100	96.293	Macaca_fascicularis
ENSCHIG00000002873	RC3H1	100	96.889	ENSMMUG00000000630	RC3H1	100	96.889	Macaca_mulatta
ENSCHIG00000002873	RC3H1	100	96.381	ENSMNEG00000035968	RC3H1	100	96.381	Macaca_nemestrina
ENSCHIG00000002873	RC3H1	100	96.293	ENSMLEG00000037455	RC3H1	100	96.293	Mandrillus_leucophaeus
ENSCHIG00000002873	RC3H1	97	94.052	ENSMAUG00000020864	Rc3h1	100	93.548	Mesocricetus_auratus
ENSCHIG00000002873	RC3H1	100	96.290	ENSMICG00000003000	RC3H1	100	96.290	Microcebus_murinus
ENSCHIG00000002873	RC3H1	93	91.848	ENSMOCG00000016587	Rc3h1	98	91.469	Microtus_ochrogaster
ENSCHIG00000002873	RC3H1	100	91.446	ENSMODG00000004289	RC3H1	100	91.534	Monodelphis_domestica
ENSCHIG00000002873	RC3H1	100	92.491	MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.049	Mus_caroli
ENSCHIG00000002873	RC3H1	100	93.143	ENSMUSG00000040423	Rc3h1	100	92.698	Mus_musculus
ENSCHIG00000002873	RC3H1	100	92.226	MGP_PahariEiJ_G0027992	Rc3h1	100	91.784	Mus_pahari
ENSCHIG00000002873	RC3H1	100	92.965	MGP_SPRETEiJ_G0015563	Rc3h1	100	92.520	Mus_spretus
ENSCHIG00000002873	RC3H1	100	95.675	ENSMPUG00000004747	RC3H1	100	95.318	Mustela_putorius_furo
ENSCHIG00000002873	RC3H1	100	94.346	ENSMLUG00000011127	RC3H1	100	94.346	Myotis_lucifugus
ENSCHIG00000002873	RC3H1	100	94.700	ENSNGAG00000011135	Rc3h1	100	94.258	Nannospalax_galili
ENSCHIG00000002873	RC3H1	100	96.117	ENSNLEG00000015327	RC3H1	100	96.117	Nomascus_leucogenys
ENSCHIG00000002873	RC3H1	99	81.681	ENSOPRG00000013068	RC3H1	99	81.117	Ochotona_princeps
ENSCHIG00000002873	RC3H1	100	93.557	ENSODEG00000014185	RC3H1	100	93.557	Octodon_degus
ENSCHIG00000002873	RC3H1	100	90.131	ENSOANG00000000924	RC3H1	100	90.218	Ornithorhynchus_anatinus
ENSCHIG00000002873	RC3H1	99	95.072	ENSOCUG00000004930	RC3H1	98	95.072	Oryctolagus_cuniculus
ENSCHIG00000002873	RC3H1	100	89.242	ENSOGAG00000004044	RC3H1	100	89.242	Otolemur_garnettii
ENSCHIG00000002873	RC3H1	100	98.158	ENSOARG00000013011	RC3H1	100	98.158	Ovis_aries
ENSCHIG00000002873	RC3H1	100	96.208	ENSPPAG00000039253	RC3H1	100	96.208	Pan_paniscus
ENSCHIG00000002873	RC3H1	100	97.240	ENSPPRG00000009007	RC3H1	100	97.240	Panthera_pardus
ENSCHIG00000002873	RC3H1	100	96.042	ENSPTIG00000015326	RC3H1	100	96.042	Panthera_tigris_altaica
ENSCHIG00000002873	RC3H1	100	96.208	ENSPTRG00000001702	RC3H1	100	96.208	Pan_troglodytes
ENSCHIG00000002873	RC3H1	100	96.293	ENSPANG00000008886	RC3H1	100	96.293	Papio_anubis
ENSCHIG00000002873	RC3H1	100	89.744	ENSPSIG00000016181	RC3H1	100	89.920	Pelodiscus_sinensis
ENSCHIG00000002873	RC3H1	100	93.021	ENSPEMG00000011966	Rc3h1	100	92.491	Peromyscus_maniculatus_bairdii
ENSCHIG00000002873	RC3H1	71	93.924	ENSPCIG00000002058	RC3H1	95	98.430	Phascolarctos_cinereus
ENSCHIG00000002873	RC3H1	100	94.558	ENSPPYG00000000490	RC3H1	98	96.911	Pongo_abelii
ENSCHIG00000002873	RC3H1	80	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSCHIG00000002873	RC3H1	82	95.615	ENSPCOG00000021795	RC3H1	96	95.615	Propithecus_coquereli
ENSCHIG00000002873	RC3H1	100	87.191	ENSPVAG00000007593	RC3H1	100	87.191	Pteropus_vampyrus
ENSCHIG00000002873	RC3H1	97	61.998	ENSPNAG00000023439	rc3h1a	95	90.766	Pygocentrus_nattereri
ENSCHIG00000002873	RC3H1	100	96.296	ENSRBIG00000037743	RC3H1	100	96.296	Rhinopithecus_bieti
ENSCHIG00000002873	RC3H1	100	96.205	ENSRROG00000036546	RC3H1	100	96.205	Rhinopithecus_roxellana
ENSCHIG00000002873	RC3H1	93	91.595	ENSSBOG00000010664	RC3H1	100	91.595	Saimiri_boliviensis_boliviensis
ENSCHIG00000002873	RC3H1	100	90.308	ENSSHAG00000007589	RC3H1	100	90.396	Sarcophilus_harrisii
ENSCHIG00000002873	RC3H1	87	86.261	ENSSARG00000004660	RC3H1	86	86.261	Sorex_araneus
ENSCHIG00000002873	RC3H1	100	83.523	ENSSPUG00000018472	RC3H1	100	82.895	Sphenodon_punctatus
ENSCHIG00000002873	RC3H1	100	97.150	ENSSSCG00000015498	RC3H1	100	97.150	Sus_scrofa
ENSCHIG00000002873	RC3H1	100	87.270	ENSTGUG00000004090	RC3H1	100	86.555	Taeniopygia_guttata
ENSCHIG00000002873	RC3H1	94	90.471	ENSTBEG00000005015	RC3H1	93	90.471	Tupaia_belangeri
ENSCHIG00000002873	RC3H1	100	96.476	ENSTTRG00000008572	RC3H1	100	96.476	Tursiops_truncatus
ENSCHIG00000002873	RC3H1	100	95.318	ENSUAMG00000019525	RC3H1	100	95.318	Ursus_americanus
ENSCHIG00000002873	RC3H1	100	95.852	ENSUMAG00000020087	RC3H1	100	95.852	Ursus_maritimus
ENSCHIG00000002873	RC3H1	91	98.198	ENSVPAG00000002591	RC3H1	92	98.198	Vicugna_pacos
ENSCHIG00000002873	RC3H1	100	96.039	ENSVVUG00000014201	RC3H1	100	96.039	Vulpes_vulpes
ENSCHIG00000002873	RC3H1	100	78.068	ENSXETG00000020030	rc3h1	100	77.787	Xenopus_tropicalis