EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000003141 (Gene tree)
Gene ID: 102183329
Gene Symbol: PNLDC1
Alias: FLJ40240|dJ195P10.2
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 23309 bases
Position: chr9:83363957-83387265
Accession: 102183329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000001655	CAF1	PF04857.20	3.1e-77	1	1
ENSCHIP00000001659	CAF1	PF04857.20	6.8e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000004593	PNLDC1-202	1539	-	ENSCHIP00000001659	512 (aa)	-	UPI000D18FB42
ENSCHIT00000004582	PNLDC1-201	1593	XM_005684949	ENSCHIP00000001655	530 (aa)	XP_005685006	UPI000D1950C8

Gene Model

Click here to download ENSCHIG00000003141's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000003141's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000003141	PNLDC1	99	85.472	ENSG00000146453	PNLDC1	99	85.472	Homo_sapiens
ENSCHIG00000003141	PNLDC1	98	88.314	ENSAMEG00000015371	PNLDC1	99	87.925	Ailuropoda_melanoleuca
ENSCHIG00000003141	PNLDC1	98	56.214	ENSAPLG00000007014	PNLDC1	99	56.214	Anas_platyrhynchos
ENSCHIG00000003141	PNLDC1	99	58.769	ENSACAG00000013667	PNLDC1	99	58.769	Anolis_carolinensis
ENSCHIG00000003141	PNLDC1	100	83.835	ENSANAG00000034713	PNLDC1	100	84.766	Aotus_nancymaae
ENSCHIG00000003141	PNLDC1	99	91.871	ENSBTAG00000015166	PNLDC1	96	95.455	Bos_taurus
ENSCHIG00000003141	PNLDC1	100	83.647	ENSCJAG00000011865	PNLDC1	100	83.890	Callithrix_jacchus
ENSCHIG00000003141	PNLDC1	100	90.019	ENSCAFG00000000740	PNLDC1	100	90.019	Canis_familiaris
ENSCHIG00000003141	PNLDC1	100	90.755	ENSCAFG00020017742	PNLDC1	100	90.755	Canis_lupus_dingo
ENSCHIG00000003141	PNLDC1	100	83.427	ENSTSYG00000005606	PNLDC1	100	83.427	Carlito_syrichta
ENSCHIG00000003141	PNLDC1	100	60.526	ENSCAPG00000011893	PNLDC1	100	60.526	Cavia_aperea
ENSCHIG00000003141	PNLDC1	100	77.486	ENSCPOG00000019565	PNLDC1	100	77.486	Cavia_porcellus
ENSCHIG00000003141	PNLDC1	100	83.992	ENSCCAG00000026232	PNLDC1	100	83.992	Cebus_capucinus
ENSCHIG00000003141	PNLDC1	100	84.774	ENSCATG00000033196	PNLDC1	100	84.774	Cercocebus_atys
ENSCHIG00000003141	PNLDC1	99	82.674	ENSCLAG00000003228	PNLDC1	99	82.674	Chinchilla_lanigera
ENSCHIG00000003141	PNLDC1	99	82.061	ENSCSAG00000012478	PNLDC1	99	83.946	Chlorocebus_sabaeus
ENSCHIG00000003141	PNLDC1	96	65.511	ENSCPBG00000004050	PNLDC1	100	65.703	Chrysemys_picta_bellii
ENSCHIG00000003141	PNLDC1	98	82.330	ENSCANG00000043076	PNLDC1	97	84.615	Colobus_angolensis_palliatus
ENSCHIG00000003141	PNLDC1	100	78.424	ENSCGRG00001007470	-	99	78.424	Cricetulus_griseus_chok1gshd
ENSCHIG00000003141	PNLDC1	100	62.642	ENSCGRG00001011981	-	99	62.642	Cricetulus_griseus_chok1gshd
ENSCHIG00000003141	PNLDC1	100	65.094	ENSCGRG00000003103	-	99	65.094	Cricetulus_griseus_crigri
ENSCHIG00000003141	PNLDC1	100	78.424	ENSCGRG00000010221	-	99	78.424	Cricetulus_griseus_crigri
ENSCHIG00000003141	PNLDC1	100	84.803	ENSDNOG00000013709	PNLDC1	100	84.803	Dasypus_novemcinctus
ENSCHIG00000003141	PNLDC1	100	76.966	ENSDORG00000011517	Pnldc1	99	87.220	Dipodomys_ordii
ENSCHIG00000003141	PNLDC1	93	74.949	ENSETEG00000007587	PNLDC1	99	74.949	Echinops_telfairi
ENSCHIG00000003141	PNLDC1	100	83.208	ENSEASG00005019029	PNLDC1	100	83.208	Equus_asinus_asinus
ENSCHIG00000003141	PNLDC1	100	88.931	ENSECAG00000012898	PNLDC1	100	88.931	Equus_caballus
ENSCHIG00000003141	PNLDC1	69	81.250	ENSEEUG00000005717	-	86	81.250	Erinaceus_europaeus
ENSCHIG00000003141	PNLDC1	100	89.306	ENSFCAG00000002848	PNLDC1	100	89.306	Felis_catus
ENSCHIG00000003141	PNLDC1	95	55.268	ENSFALG00000012081	PNLDC1	99	56.126	Ficedula_albicollis
ENSCHIG00000003141	PNLDC1	100	82.895	ENSFDAG00000021334	PNLDC1	100	82.895	Fukomys_damarensis
ENSCHIG00000003141	PNLDC1	79	58.156	ENSGALG00000011624	PNLDC1	82	58.156	Gallus_gallus
ENSCHIG00000003141	PNLDC1	99	64.618	ENSGAGG00000015276	PNLDC1	100	65.988	Gopherus_agassizii
ENSCHIG00000003141	PNLDC1	100	85.311	ENSGGOG00000014077	PNLDC1	100	85.311	Gorilla_gorilla
ENSCHIG00000003141	PNLDC1	100	84.586	ENSHGLG00000006889	PNLDC1	100	84.586	Heterocephalus_glaber_female
ENSCHIG00000003141	PNLDC1	100	84.586	ENSHGLG00100018275	PNLDC1	100	84.586	Heterocephalus_glaber_male
ENSCHIG00000003141	PNLDC1	99	86.932	ENSSTOG00000005595	PNLDC1	99	86.932	Ictidomys_tridecemlineatus
ENSCHIG00000003141	PNLDC1	99	77.609	ENSJJAG00000009937	Pnldc1	99	77.609	Jaculus_jaculus
ENSCHIG00000003141	PNLDC1	59	86.984	ENSLAFG00000030189	PNLDC1	92	86.984	Loxodonta_africana
ENSCHIG00000003141	PNLDC1	100	85.338	ENSMFAG00000041296	PNLDC1	100	85.338	Macaca_fascicularis
ENSCHIG00000003141	PNLDC1	100	85.338	ENSMMUG00000004181	PNLDC1	100	85.338	Macaca_mulatta
ENSCHIG00000003141	PNLDC1	100	85.150	ENSMNEG00000034271	PNLDC1	100	85.150	Macaca_nemestrina
ENSCHIG00000003141	PNLDC1	100	82.830	ENSMLEG00000044059	PNLDC1	100	82.830	Mandrillus_leucophaeus
ENSCHIG00000003141	PNLDC1	97	56.360	ENSMGAG00000012470	PNLDC1	98	56.360	Meleagris_gallopavo
ENSCHIG00000003141	PNLDC1	99	65.103	ENSMAUG00000012298	Pnldc1	99	65.103	Mesocricetus_auratus
ENSCHIG00000003141	PNLDC1	100	86.116	ENSMICG00000008021	PNLDC1	100	86.116	Microcebus_murinus
ENSCHIG00000003141	PNLDC1	100	83.490	ENSMOCG00000014287	Pnldc1	100	83.490	Microtus_ochrogaster
ENSCHIG00000003141	PNLDC1	99	75.330	ENSMODG00000007420	PNLDC1	99	75.330	Monodelphis_domestica
ENSCHIG00000003141	PNLDC1	100	84.398	MGP_CAROLIEiJ_G0021045	Pnldc1	100	84.398	Mus_caroli
ENSCHIG00000003141	PNLDC1	100	84.053	ENSMUSG00000073460	Pnldc1	100	89.841	Mus_musculus
ENSCHIG00000003141	PNLDC1	100	84.774	MGP_PahariEiJ_G0023361	Pnldc1	100	84.774	Mus_pahari
ENSCHIG00000003141	PNLDC1	100	84.023	MGP_SPRETEiJ_G0021975	Pnldc1	100	84.023	Mus_spretus
ENSCHIG00000003141	PNLDC1	99	88.555	ENSMPUG00000004920	PNLDC1	99	88.555	Mustela_putorius_furo
ENSCHIG00000003141	PNLDC1	100	84.831	ENSMLUG00000000747	PNLDC1	100	84.831	Myotis_lucifugus
ENSCHIG00000003141	PNLDC1	100	84.615	ENSNGAG00000017714	Pnldc1	99	84.615	Nannospalax_galili
ENSCHIG00000003141	PNLDC1	99	82.375	ENSNLEG00000011282	PNLDC1	99	83.721	Nomascus_leucogenys
ENSCHIG00000003141	PNLDC1	56	69.097	ENSMEUG00000014042	-	100	69.097	Notamacropus_eugenii
ENSCHIG00000003141	PNLDC1	61	64.968	ENSMEUG00000011926	-	64	64.968	Notamacropus_eugenii
ENSCHIG00000003141	PNLDC1	78	86.364	ENSOPRG00000003813	PNLDC1	79	86.364	Ochotona_princeps
ENSCHIG00000003141	PNLDC1	100	82.331	ENSODEG00000008047	PNLDC1	100	82.331	Octodon_degus
ENSCHIG00000003141	PNLDC1	99	55.955	ENSOANG00000012199	PNLDC1	99	57.845	Ornithorhynchus_anatinus
ENSCHIG00000003141	PNLDC1	100	83.835	ENSOCUG00000013867	PNLDC1	100	83.835	Oryctolagus_cuniculus
ENSCHIG00000003141	PNLDC1	99	86.742	ENSOGAG00000007331	PNLDC1	99	86.742	Otolemur_garnettii
ENSCHIG00000003141	PNLDC1	100	97.170	ENSOARG00000004585	PNLDC1	100	97.170	Ovis_aries
ENSCHIG00000003141	PNLDC1	100	84.934	ENSPPAG00000026651	PNLDC1	100	84.934	Pan_paniscus
ENSCHIG00000003141	PNLDC1	100	88.931	ENSPPRG00000012854	PNLDC1	100	88.931	Panthera_pardus
ENSCHIG00000003141	PNLDC1	98	86.616	ENSPTIG00000011501	PNLDC1	98	86.616	Panthera_tigris_altaica
ENSCHIG00000003141	PNLDC1	100	84.934	ENSPTRG00000018762	PNLDC1	100	84.934	Pan_troglodytes
ENSCHIG00000003141	PNLDC1	100	85.338	ENSPANG00000022009	PNLDC1	100	85.338	Papio_anubis
ENSCHIG00000003141	PNLDC1	100	84.457	ENSPEMG00000016301	Pnldc1	99	84.457	Peromyscus_maniculatus_bairdii
ENSCHIG00000003141	PNLDC1	84	76.498	ENSPCIG00000023412	PNLDC1	100	76.644	Phascolarctos_cinereus
ENSCHIG00000003141	PNLDC1	100	78.947	ENSPPYG00000017148	PNLDC1	100	78.947	Pongo_abelii
ENSCHIG00000003141	PNLDC1	99	76.660	ENSPCAG00000014169	PNLDC1	99	76.660	Procavia_capensis
ENSCHIG00000003141	PNLDC1	100	85.714	ENSPCOG00000025722	PNLDC1	100	85.714	Propithecus_coquereli
ENSCHIG00000003141	PNLDC1	70	96.226	ENSPVAG00000005325	PNLDC1	70	96.226	Pteropus_vampyrus
ENSCHIG00000003141	PNLDC1	100	83.677	ENSRNOG00000023140	Pnldc1	99	85.535	Rattus_norvegicus
ENSCHIG00000003141	PNLDC1	100	84.962	ENSRBIG00000033806	PNLDC1	100	84.962	Rhinopithecus_bieti
ENSCHIG00000003141	PNLDC1	98	82.718	ENSRROG00000043919	PNLDC1	97	85.207	Rhinopithecus_roxellana
ENSCHIG00000003141	PNLDC1	100	84.586	ENSSBOG00000019135	PNLDC1	100	84.586	Saimiri_boliviensis_boliviensis
ENSCHIG00000003141	PNLDC1	93	79.480	ENSSHAG00000015192	PNLDC1	98	75.195	Sarcophilus_harrisii
ENSCHIG00000003141	PNLDC1	54	67.832	ENSSPUG00000004627	PNLDC1	99	67.857	Sphenodon_punctatus
ENSCHIG00000003141	PNLDC1	96	89.391	ENSSSCG00000004046	PNLDC1	99	89.391	Sus_scrofa
ENSCHIG00000003141	PNLDC1	92	56.289	ENSTGUG00000011418	PNLDC1	99	57.172	Taeniopygia_guttata
ENSCHIG00000003141	PNLDC1	98	73.552	ENSTBEG00000009131	PNLDC1	98	74.951	Tupaia_belangeri
ENSCHIG00000003141	PNLDC1	70	86.523	ENSTTRG00000010409	PNLDC1	70	86.523	Tursiops_truncatus
ENSCHIG00000003141	PNLDC1	99	77.407	ENSUAMG00000015783	PNLDC1	99	77.407	Ursus_americanus
ENSCHIG00000003141	PNLDC1	96	84.263	ENSUMAG00000011903	PNLDC1	99	84.263	Ursus_maritimus
ENSCHIG00000003141	PNLDC1	96	90.998	ENSVVUG00000006586	PNLDC1	99	89.733	Vulpes_vulpes