EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000007231 (Gene tree)
Gene ID: 102170808
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chr17:46740933-46742045
Accession: 102170808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000003240	RRM_5	PF13893.6	3.2e-15	1	3
ENSCHIP00000003240	RRM_5	PF13893.6	3.2e-15	2	3
ENSCHIP00000003240	RRM_5	PF13893.6	3.2e-15	3	3
ENSCHIP00000003240	RRM_1	PF00076.22	2.2e-84	1	4
ENSCHIP00000003240	RRM_1	PF00076.22	2.2e-84	2	4
ENSCHIP00000003240	RRM_1	PF00076.22	2.2e-84	3	4
ENSCHIP00000003240	RRM_1	PF00076.22	2.2e-84	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000009822	PABPC4L-201	1113	XM_018061534	ENSCHIP00000003240	370 (aa)	XP_017917023	UPI0006B13026

Gene Model

Click here to download ENSCHIG00000007231's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG
chx03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000007231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000007231	PABPC4L	99	40.526	ENSCHIG00000025663	-	56	40.526
ENSCHIG00000007231	PABPC4L	61	37.333	ENSCHIG00000021288	CIRBP	50	37.333
ENSCHIG00000007231	PABPC4L	99	69.730	ENSCHIG00000023714	PABPC1	97	72.589
ENSCHIG00000007231	PABPC4L	99	62.162	ENSCHIG00000023385	-	61	62.162
ENSCHIG00000007231	PABPC4L	98	30.519	ENSCHIG00000002038	ELAVL4	91	30.519
ENSCHIG00000007231	PABPC4L	97	30.952	ENSCHIG00000020214	TIA1	87	30.952
ENSCHIG00000007231	PABPC4L	94	62.051	ENSCHIG00000011138	-	98	62.051
ENSCHIG00000007231	PABPC4L	94	61.538	ENSCHIG00000006283	-	98	61.538
ENSCHIG00000007231	PABPC4L	99	74.324	ENSCHIG00000019398	-	58	74.324
ENSCHIG00000007231	PABPC4L	99	63.784	ENSCHIG00000025759	PABPC1L	59	63.784
ENSCHIG00000007231	PABPC4L	97	63.202	ENSCHIG00000019004	PABPC5	96	63.187
ENSCHIG00000007231	PABPC4L	87	36.486	ENSCHIG00000024582	CELF1	56	36.486
ENSCHIG00000007231	PABPC4L	82	32.927	ENSCHIG00000015379	CELF2	56	32.927

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000007231	PABPC4L	99	89.702	ENSG00000254535	PABPC4L	99	89.702	Homo_sapiens
ENSCHIG00000007231	PABPC4L	99	87.534	ENSANAG00000017199	PABPC4L	86	87.534	Aotus_nancymaae
ENSCHIG00000007231	PABPC4L	100	99.730	ENSBTAG00000046902	PABPC4L	100	99.730	Bos_taurus
ENSCHIG00000007231	PABPC4L	99	87.805	ENSCJAG00000045332	PABPC4L	86	87.805	Callithrix_jacchus
ENSCHIG00000007231	PABPC4L	99	75.815	ENSCAFG00020019182	-	55	75.815	Canis_lupus_dingo
ENSCHIG00000007231	PABPC4L	97	79.341	ENSCAPG00000000555	PABPC4L	100	79.341	Cavia_aperea
ENSCHIG00000007231	PABPC4L	99	76.423	ENSCPOG00000033167	PABPC4L	100	76.423	Cavia_porcellus
ENSCHIG00000007231	PABPC4L	99	87.805	ENSCCAG00000031681	PABPC4L	86	87.805	Cebus_capucinus
ENSCHIG00000007231	PABPC4L	99	82.114	ENSCLAG00000017628	PABPC4L	99	82.114	Chinchilla_lanigera
ENSCHIG00000007231	PABPC4L	99	86.992	ENSCANG00000037677	PABPC4L	99	86.992	Colobus_angolensis_palliatus
ENSCHIG00000007231	PABPC4L	99	82.114	ENSCGRG00001002070	Pabpc4l	99	82.114	Cricetulus_griseus_chok1gshd
ENSCHIG00000007231	PABPC4L	99	82.114	ENSCGRG00000020086	Pabpc4l	99	82.114	Cricetulus_griseus_crigri
ENSCHIG00000007231	PABPC4L	99	89.973	ENSDNOG00000031077	PABPC4L	95	89.973	Dasypus_novemcinctus
ENSCHIG00000007231	PABPC4L	100	92.162	ENSEASG00005007883	PABPC4L	100	92.162	Equus_asinus_asinus
ENSCHIG00000007231	PABPC4L	100	92.432	ENSECAG00000031416	PABPC4L	100	92.432	Equus_caballus
ENSCHIG00000007231	PABPC4L	100	93.243	ENSFCAG00000028270	PABPC4L	100	93.243	Felis_catus
ENSCHIG00000007231	PABPC4L	100	81.081	ENSFDAG00000019606	PABPC4L	100	81.081	Fukomys_damarensis
ENSCHIG00000007231	PABPC4L	99	89.702	ENSGGOG00000024991	PABPC4L	99	89.702	Gorilla_gorilla
ENSCHIG00000007231	PABPC4L	100	81.351	ENSHGLG00000020104	PABPC4L	100	81.351	Heterocephalus_glaber_female
ENSCHIG00000007231	PABPC4L	100	81.351	ENSHGLG00100020648	PABPC4L	100	81.351	Heterocephalus_glaber_male
ENSCHIG00000007231	PABPC4L	99	84.595	ENSSTOG00000019472	PABPC4L	99	84.595	Ictidomys_tridecemlineatus
ENSCHIG00000007231	PABPC4L	100	81.892	ENSJJAG00000004090	Pabpc4l	100	81.892	Jaculus_jaculus
ENSCHIG00000007231	PABPC4L	99	81.301	ENSMAUG00000016313	Pabpc4l	99	81.301	Mesocricetus_auratus
ENSCHIG00000007231	PABPC4L	99	89.973	ENSMICG00000029683	PABPC4L	99	89.973	Microcebus_murinus
ENSCHIG00000007231	PABPC4L	99	82.385	ENSMOCG00000007551	Pabpc4l	99	82.385	Microtus_ochrogaster
ENSCHIG00000007231	PABPC4L	99	79.133	MGP_CAROLIEiJ_G0024968	Pabpc4l	99	79.133	Mus_caroli
ENSCHIG00000007231	PABPC4L	99	79.404	ENSMUSG00000090919	Pabpc4l	100	78.488	Mus_musculus
ENSCHIG00000007231	PABPC4L	99	79.675	MGP_PahariEiJ_G0026409	Pabpc4l	100	79.070	Mus_pahari
ENSCHIG00000007231	PABPC4L	99	78.862	MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	Mus_spretus
ENSCHIG00000007231	PABPC4L	99	81.572	ENSMLUG00000008254	PABPC4L	99	81.572	Myotis_lucifugus
ENSCHIG00000007231	PABPC4L	99	84.824	ENSNGAG00000001502	Pabpc4l	99	84.824	Nannospalax_galili
ENSCHIG00000007231	PABPC4L	99	89.431	ENSNLEG00000019300	PABPC4L	99	89.431	Nomascus_leucogenys
ENSCHIG00000007231	PABPC4L	99	83.198	ENSOGAG00000026166	PABPC4L	99	83.198	Otolemur_garnettii
ENSCHIG00000007231	PABPC4L	99	89.474	ENSPPAG00000043745	PABPC4L	93	89.474	Pan_paniscus
ENSCHIG00000007231	PABPC4L	100	92.703	ENSPPRG00000018628	PABPC4L	100	92.703	Panthera_pardus
ENSCHIG00000007231	PABPC4L	100	93.243	ENSPTIG00000010106	PABPC4L	100	93.243	Panthera_tigris_altaica
ENSCHIG00000007231	PABPC4L	99	89.474	ENSPTRG00000045513	-	78	89.474	Pan_troglodytes
ENSCHIG00000007231	PABPC4L	99	81.843	ENSPEMG00000012565	Pabpc4l	99	81.843	Peromyscus_maniculatus_bairdii
ENSCHIG00000007231	PABPC4L	99	89.431	ENSPCOG00000025578	PABPC4L	99	89.431	Propithecus_coquereli
ENSCHIG00000007231	PABPC4L	99	80.217	ENSRNOG00000029749	Pabpc4l	99	80.217	Rattus_norvegicus
ENSCHIG00000007231	PABPC4L	99	86.721	ENSRBIG00000030229	PABPC4L	99	86.721	Rhinopithecus_bieti
ENSCHIG00000007231	PABPC4L	99	86.450	ENSRROG00000020367	PABPC4L	99	86.450	Rhinopithecus_roxellana
ENSCHIG00000007231	PABPC4L	99	86.721	ENSSBOG00000016382	PABPC4L	99	86.721	Saimiri_boliviensis_boliviensis
ENSCHIG00000007231	PABPC4L	100	88.919	ENSSSCG00000009067	PABPC4L	100	88.919	Sus_scrofa
ENSCHIG00000007231	PABPC4L	100	92.973	ENSUAMG00000001289	PABPC4L	100	92.973	Ursus_americanus
ENSCHIG00000007231	PABPC4L	100	92.973	ENSUMAG00000014887	PABPC4L	100	92.973	Ursus_maritimus
ENSCHIG00000007231	PABPC4L	93	76.829	ENSVVUG00000011060	-	75	76.829	Vulpes_vulpes