EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000007298 (Gene tree)
Gene ID: 100860967
Gene Symbol: -
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 6478 bases
Position: chr10:76318143-76324620
Accession: 100860967
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000003281	Exo_endo_phos	PF03372.23	7.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000009972	-	5544	XM_005685405	ENSCHIP00000003281	318 (aa)	XP_005685462	UPI0005FAFE28

Gene Model

Click here to download ENSCHIG00000007298's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000007298's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000007298	-	98	77.885	ENSCHIG00000014537	-	99	77.885

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000007298	-	100	93.082	ENSG00000100823	APEX1	100	93.082	Homo_sapiens
ENSCHIG00000007298	-	88	68.459	ENSAPOG00000017002	apex1	91	68.459	Acanthochromis_polyacanthus
ENSCHIG00000007298	-	100	96.541	ENSAMEG00000005418	APEX1	100	96.541	Ailuropoda_melanoleuca
ENSCHIG00000007298	-	87	70.652	ENSACIG00000010653	apex1	94	70.251	Amphilophus_citrinellus
ENSCHIG00000007298	-	88	68.100	ENSAOCG00000009649	apex1	90	68.100	Amphiprion_ocellaris
ENSCHIG00000007298	-	88	68.100	ENSAPEG00000021453	apex1	90	68.100	Amphiprion_percula
ENSCHIG00000007298	-	99	66.032	ENSATEG00000002883	apex1	97	66.032	Anabas_testudineus
ENSCHIG00000007298	-	100	69.255	ENSACAG00000008099	APEX1	100	69.255	Anolis_carolinensis
ENSCHIG00000007298	-	100	94.025	ENSANAG00000030117	APEX1	100	94.025	Aotus_nancymaae
ENSCHIG00000007298	-	87	70.290	ENSACLG00000018441	apex1	99	65.823	Astatotilapia_calliptera
ENSCHIG00000007298	-	100	65.000	ENSAMXG00000034699	apex1	100	64.062	Astyanax_mexicanus
ENSCHIG00000007298	-	100	99.371	ENSBTAG00000002745	APEX1	100	99.371	Bos_taurus
ENSCHIG00000007298	-	80	44.531	WBGene00001372	exo-3	88	44.531	Caenorhabditis_elegans
ENSCHIG00000007298	-	100	94.654	ENSCJAG00000009726	APEX1	100	94.654	Callithrix_jacchus
ENSCHIG00000007298	-	100	93.396	ENSCAFG00000032033	APEX1	100	93.396	Canis_familiaris
ENSCHIG00000007298	-	54	88.953	ENSCAFG00020023002	-	96	88.953	Canis_lupus_dingo
ENSCHIG00000007298	-	100	93.396	ENSCAFG00020014377	-	100	93.396	Canis_lupus_dingo
ENSCHIG00000007298	-	100	94.654	ENSTSYG00000034813	APEX1	100	94.654	Carlito_syrichta
ENSCHIG00000007298	-	85	87.454	ENSCAPG00000016235	APEX1	91	95.763	Cavia_aperea
ENSCHIG00000007298	-	100	93.711	ENSCPOG00000030909	APEX1	100	93.711	Cavia_porcellus
ENSCHIG00000007298	-	100	81.132	ENSCCAG00000031931	-	100	81.132	Cebus_capucinus
ENSCHIG00000007298	-	100	94.654	ENSCCAG00000033056	-	100	94.654	Cebus_capucinus
ENSCHIG00000007298	-	100	92.767	ENSCATG00000015580	APEX1	100	92.767	Cercocebus_atys
ENSCHIG00000007298	-	100	93.711	ENSCLAG00000001002	APEX1	100	93.711	Chinchilla_lanigera
ENSCHIG00000007298	-	100	92.453	ENSCSAG00000016685	-	100	92.453	Chlorocebus_sabaeus
ENSCHIG00000007298	-	100	92.453	ENSCSAG00000016670	-	100	92.453	Chlorocebus_sabaeus
ENSCHIG00000007298	-	100	71.787	ENSCPBG00000009567	APEX1	100	71.787	Chrysemys_picta_bellii
ENSCHIG00000007298	-	83	58.491	ENSCING00000008137	-	84	58.491	Ciona_intestinalis
ENSCHIG00000007298	-	94	50.167	ENSCSAVG00000007144	-	100	53.668	Ciona_savignyi
ENSCHIG00000007298	-	100	92.767	ENSCANG00000030726	APEX1	100	92.767	Colobus_angolensis_palliatus
ENSCHIG00000007298	-	100	89.937	ENSCGRG00001017046	Apex1	100	89.937	Cricetulus_griseus_chok1gshd
ENSCHIG00000007298	-	100	89.937	ENSCGRG00000008984	Apex1	100	89.937	Cricetulus_griseus_crigri
ENSCHIG00000007298	-	99	63.291	ENSCSEG00000017499	apex1	99	63.208	Cynoglossus_semilaevis
ENSCHIG00000007298	-	99	65.823	ENSCVAG00000022075	apex1	99	65.823	Cyprinodon_variegatus
ENSCHIG00000007298	-	100	65.094	ENSDARG00000045843	apex1	100	65.094	Danio_rerio
ENSCHIG00000007298	-	100	89.623	ENSDNOG00000042234	APEX1	95	89.623	Dasypus_novemcinctus
ENSCHIG00000007298	-	100	94.969	ENSDORG00000001616	Apex1	100	94.969	Dipodomys_ordii
ENSCHIG00000007298	-	100	93.082	ENSETEG00000004855	-	100	93.082	Echinops_telfairi
ENSCHIG00000007298	-	75	63.598	ENSEBUG00000000622	-	92	63.598	Eptatretus_burgeri
ENSCHIG00000007298	-	100	95.597	ENSEASG00005017489	APEX1	74	95.597	Equus_asinus_asinus
ENSCHIG00000007298	-	100	95.597	ENSECAG00000022325	APEX1	82	95.597	Equus_caballus
ENSCHIG00000007298	-	91	94.792	ENSEEUG00000012569	APEX1	100	94.792	Erinaceus_europaeus
ENSCHIG00000007298	-	100	64.151	ENSELUG00000021706	apex1	100	64.151	Esox_lucius
ENSCHIG00000007298	-	100	95.283	ENSFCAG00000030869	APEX1	100	95.283	Felis_catus
ENSCHIG00000007298	-	100	93.396	ENSFDAG00000006120	APEX1	100	93.396	Fukomys_damarensis
ENSCHIG00000007298	-	99	67.089	ENSFHEG00000009031	apex1	83	67.089	Fundulus_heteroclitus
ENSCHIG00000007298	-	99	61.129	ENSGMOG00000007943	apex1	99	61.076	Gadus_morhua
ENSCHIG00000007298	-	88	71.326	ENSGAFG00000005311	apex1	99	66.772	Gambusia_affinis
ENSCHIG00000007298	-	99	65.190	ENSGACG00000019497	apex1	99	68.797	Gasterosteus_aculeatus
ENSCHIG00000007298	-	100	71.473	ENSGAGG00000014999	APEX1	100	71.473	Gopherus_agassizii
ENSCHIG00000007298	-	100	93.396	ENSGGOG00000002128	APEX1	100	93.396	Gorilla_gorilla
ENSCHIG00000007298	-	87	69.928	ENSHBUG00000005894	apex1	99	65.190	Haplochromis_burtoni
ENSCHIG00000007298	-	100	94.654	ENSHGLG00000002848	APEX1	100	94.654	Heterocephalus_glaber_female
ENSCHIG00000007298	-	100	94.654	ENSHGLG00100017878	APEX1	100	94.654	Heterocephalus_glaber_male
ENSCHIG00000007298	-	99	64.984	ENSHCOG00000009961	apex1	99	64.353	Hippocampus_comes
ENSCHIG00000007298	-	100	66.771	ENSIPUG00000005799	apex1	100	65.831	Ictalurus_punctatus
ENSCHIG00000007298	-	100	93.082	ENSSTOG00000010096	APEX1	100	93.082	Ictidomys_tridecemlineatus
ENSCHIG00000007298	-	100	83.648	ENSJJAG00000003660	-	100	83.648	Jaculus_jaculus
ENSCHIG00000007298	-	100	93.396	ENSJJAG00000012067	-	100	93.396	Jaculus_jaculus
ENSCHIG00000007298	-	100	81.132	ENSJJAG00000020465	-	100	81.132	Jaculus_jaculus
ENSCHIG00000007298	-	99	65.823	ENSKMAG00000021171	apex1	99	65.823	Kryptolebias_marmoratus
ENSCHIG00000007298	-	88	67.025	ENSLBEG00000010248	apex1	99	62.975	Labrus_bergylta
ENSCHIG00000007298	-	100	66.562	ENSLACG00000008617	APEX1	100	65.625	Latimeria_chalumnae
ENSCHIG00000007298	-	100	64.907	ENSLOCG00000015516	apex1	99	64.780	Lepisosteus_oculatus
ENSCHIG00000007298	-	100	91.824	ENSLAFG00000021872	APEX1	100	91.824	Loxodonta_africana
ENSCHIG00000007298	-	100	92.767	ENSMFAG00000002565	APEX1	100	92.767	Macaca_fascicularis
ENSCHIG00000007298	-	100	92.767	ENSMMUG00000048039	APEX1	100	92.767	Macaca_mulatta
ENSCHIG00000007298	-	100	92.767	ENSMNEG00000036944	APEX1	100	92.767	Macaca_nemestrina
ENSCHIG00000007298	-	100	92.767	ENSMLEG00000042125	APEX1	100	92.767	Mandrillus_leucophaeus
ENSCHIG00000007298	-	99	66.139	ENSMAMG00000023526	apex1	99	66.139	Mastacembelus_armatus
ENSCHIG00000007298	-	87	70.290	ENSMZEG00005014187	apex1	99	65.823	Maylandia_zebra
ENSCHIG00000007298	-	100	89.937	ENSMAUG00000013994	Apex1	100	89.937	Mesocricetus_auratus
ENSCHIG00000007298	-	100	95.597	ENSMICG00000043554	APEX1	100	95.597	Microcebus_murinus
ENSCHIG00000007298	-	100	91.195	ENSMOCG00000013721	Apex1	100	91.195	Microtus_ochrogaster
ENSCHIG00000007298	-	88	66.786	ENSMMOG00000010031	apex1	87	66.786	Mola_mola
ENSCHIG00000007298	-	100	84.375	ENSMODG00000007125	APEX1	100	84.375	Monodelphis_domestica
ENSCHIG00000007298	-	88	63.082	ENSMALG00000011699	apex1	75	63.082	Monopterus_albus
ENSCHIG00000007298	-	99	92.429	MGP_CAROLIEiJ_G0019209	Apex1	99	92.429	Mus_caroli
ENSCHIG00000007298	-	100	93.082	ENSMUSG00000035960	Apex1	100	93.082	Mus_musculus
ENSCHIG00000007298	-	100	93.082	MGP_PahariEiJ_G0030232	Apex1	100	93.082	Mus_pahari
ENSCHIG00000007298	-	100	93.082	MGP_SPRETEiJ_G0020101	Apex1	100	93.082	Mus_spretus
ENSCHIG00000007298	-	100	95.000	ENSMLUG00000028957	APEX1	100	94.688	Myotis_lucifugus
ENSCHIG00000007298	-	100	92.767	ENSNGAG00000002725	-	100	92.767	Nannospalax_galili
ENSCHIG00000007298	-	100	69.811	ENSNGAG00000021748	-	99	69.811	Nannospalax_galili
ENSCHIG00000007298	-	87	69.928	ENSNBRG00000005334	apex1	91	65.506	Neolamprologus_brichardi
ENSCHIG00000007298	-	100	93.082	ENSNLEG00000010839	APEX1	100	93.082	Nomascus_leucogenys
ENSCHIG00000007298	-	100	85.535	ENSMEUG00000014519	APEX1	100	84.326	Notamacropus_eugenii
ENSCHIG00000007298	-	100	94.969	ENSOPRG00000014029	APEX1	100	94.340	Ochotona_princeps
ENSCHIG00000007298	-	100	94.340	ENSODEG00000001703	-	100	94.340	Octodon_degus
ENSCHIG00000007298	-	100	71.296	ENSODEG00000006583	-	100	71.296	Octodon_degus
ENSCHIG00000007298	-	97	75.405	ENSODEG00000004777	-	99	75.405	Octodon_degus
ENSCHIG00000007298	-	87	70.144	ENSONIG00000012089	apex1	99	66.139	Oreochromis_niloticus
ENSCHIG00000007298	-	90	83.158	ENSOANG00000008836	APEX1	80	79.321	Ornithorhynchus_anatinus
ENSCHIG00000007298	-	100	94.969	ENSOCUG00000005022	APEX1	100	94.969	Oryctolagus_cuniculus
ENSCHIG00000007298	-	99	65.823	ENSORLG00000012378	apex1	99	65.823	Oryzias_latipes
ENSCHIG00000007298	-	99	65.823	ENSORLG00020021371	apex1	99	65.823	Oryzias_latipes_hni
ENSCHIG00000007298	-	99	65.823	ENSORLG00015020089	apex1	99	65.823	Oryzias_latipes_hsok
ENSCHIG00000007298	-	88	69.534	ENSOMEG00000018876	apex1	99	65.190	Oryzias_melastigma
ENSCHIG00000007298	-	98	83.974	ENSOGAG00000029355	-	100	83.974	Otolemur_garnettii
ENSCHIG00000007298	-	100	93.711	ENSOGAG00000013335	-	100	93.711	Otolemur_garnettii
ENSCHIG00000007298	-	97	94.805	ENSOARG00000001876	-	100	94.805	Ovis_aries
ENSCHIG00000007298	-	99	82.278	ENSOARG00000014424	-	100	81.962	Ovis_aries
ENSCHIG00000007298	-	100	99.057	ENSOARG00000019740	-	100	99.057	Ovis_aries
ENSCHIG00000007298	-	100	93.396	ENSPPAG00000038760	APEX1	100	93.396	Pan_paniscus
ENSCHIG00000007298	-	100	94.969	ENSPPRG00000011794	APEX1	100	94.969	Panthera_pardus
ENSCHIG00000007298	-	100	95.283	ENSPTIG00000014829	APEX1	100	95.283	Panthera_tigris_altaica
ENSCHIG00000007298	-	100	93.396	ENSPTRG00000006093	APEX1	100	93.396	Pan_troglodytes
ENSCHIG00000007298	-	100	92.767	ENSPANG00000022757	APEX1	100	92.767	Papio_anubis
ENSCHIG00000007298	-	87	68.116	ENSPKIG00000003504	apex1	100	63.522	Paramormyrops_kingsleyae
ENSCHIG00000007298	-	76	66.255	ENSPMGG00000016596	apex1	73	66.255	Periophthalmus_magnuspinnatus
ENSCHIG00000007298	-	100	92.453	ENSPEMG00000019097	Apex1	100	92.453	Peromyscus_maniculatus_bairdii
ENSCHIG00000007298	-	94	64.667	ENSPMAG00000007275	-	95	66.548	Petromyzon_marinus
ENSCHIG00000007298	-	100	83.699	ENSPCIG00000023274	APEX1	100	85.670	Phascolarctos_cinereus
ENSCHIG00000007298	-	88	71.685	ENSPFOG00000004178	apex1	99	66.772	Poecilia_formosa
ENSCHIG00000007298	-	88	71.326	ENSPLAG00000012779	apex1	99	66.456	Poecilia_latipinna
ENSCHIG00000007298	-	88	71.685	ENSPMEG00000019623	apex1	99	66.772	Poecilia_mexicana
ENSCHIG00000007298	-	88	71.685	ENSPREG00000014298	apex1	99	66.772	Poecilia_reticulata
ENSCHIG00000007298	-	100	93.082	ENSPPYG00000005565	APEX1	100	93.082	Pongo_abelii
ENSCHIG00000007298	-	100	90.566	ENSPCAG00000010376	APEX1	100	90.566	Procavia_capensis
ENSCHIG00000007298	-	100	94.969	ENSPCOG00000021564	APEX1	100	94.969	Propithecus_coquereli
ENSCHIG00000007298	-	100	94.062	ENSPVAG00000010736	APEX1	100	94.062	Pteropus_vampyrus
ENSCHIG00000007298	-	87	70.290	ENSPNYG00000023940	apex1	99	65.823	Pundamilia_nyererei
ENSCHIG00000007298	-	93	64.527	ENSPNAG00000020897	apex1	96	63.390	Pygocentrus_nattereri
ENSCHIG00000007298	-	100	92.138	ENSRNOG00000009663	Apex1	100	92.138	Rattus_norvegicus
ENSCHIG00000007298	-	100	92.767	ENSRBIG00000038325	APEX1	99	92.767	Rhinopithecus_bieti
ENSCHIG00000007298	-	100	94.340	ENSSBOG00000018921	-	100	94.340	Saimiri_boliviensis_boliviensis
ENSCHIG00000007298	-	100	79.560	ENSSBOG00000031372	-	100	78.730	Saimiri_boliviensis_boliviensis
ENSCHIG00000007298	-	100	83.025	ENSSHAG00000013524	APEX1	100	83.025	Sarcophilus_harrisii
ENSCHIG00000007298	-	87	65.580	ENSSFOG00015001948	apex1	100	61.006	Scleropages_formosus
ENSCHIG00000007298	-	87	68.841	ENSSMAG00000013348	apex1	99	64.557	Scophthalmus_maximus
ENSCHIG00000007298	-	99	65.190	ENSSDUG00000016377	apex1	99	65.190	Seriola_dumerili
ENSCHIG00000007298	-	99	65.506	ENSSLDG00000023005	apex1	99	65.506	Seriola_lalandi_dorsalis
ENSCHIG00000007298	-	90	71.930	ENSSPUG00000000531	APEX1	95	71.930	Sphenodon_punctatus
ENSCHIG00000007298	-	99	64.873	ENSSPAG00000000458	apex1	99	64.873	Stegastes_partitus
ENSCHIG00000007298	-	100	95.597	ENSSSCG00000040060	-	100	95.597	Sus_scrofa
ENSCHIG00000007298	-	96	56.452	ENSSSCG00000039705	-	100	55.247	Sus_scrofa
ENSCHIG00000007298	-	74	59.746	ENSTGUG00000014378	APEX1	100	59.746	Taeniopygia_guttata
ENSCHIG00000007298	-	87	66.667	ENSTRUG00000004268	apex1	84	66.308	Takifugu_rubripes
ENSCHIG00000007298	-	99	62.658	ENSTNIG00000005778	apex1	99	62.658	Tetraodon_nigroviridis
ENSCHIG00000007298	-	100	91.195	ENSTBEG00000006405	APEX1	100	91.195	Tupaia_belangeri
ENSCHIG00000007298	-	74	96.186	ENSTTRG00000007860	APEX1	100	96.186	Tursiops_truncatus
ENSCHIG00000007298	-	100	95.912	ENSUAMG00000010457	APEX1	100	95.912	Ursus_americanus
ENSCHIG00000007298	-	100	95.912	ENSUMAG00000009178	APEX1	100	95.912	Ursus_maritimus
ENSCHIG00000007298	-	74	90.678	ENSVPAG00000005083	APEX1	100	90.678	Vicugna_pacos
ENSCHIG00000007298	-	100	93.082	ENSVVUG00000009010	APEX1	100	93.082	Vulpes_vulpes
ENSCHIG00000007298	-	100	66.144	ENSXETG00000024773	apex1	100	66.144	Xenopus_tropicalis
ENSCHIG00000007298	-	88	71.326	ENSXCOG00000015233	apex1	99	66.456	Xiphophorus_couchianus
ENSCHIG00000007298	-	93	67.101	ENSXMAG00000006195	apex1	99	66.456	Xiphophorus_maculatus