EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000007709 (Gene tree)
Gene ID: 102174524
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 29558 bases
Position: chr3:105576873-105606430
Accession: 102174524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000003662	EST1	PF10374.9	6.9e-24	1	1
ENSCHIP00000003662	EST1_DNA_bind	PF10373.9	5e-40	1	2
ENSCHIP00000003662	EST1_DNA_bind	PF10373.9	5e-40	2	2
ENSCHIP00000003662	PIN_4	PF13638.6	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000010771	SMG5-201	7187	XM_018046283	ENSCHIP00000003662	1016 (aa)	XP_017901772	UPI0006B11B16

Gene Model

Click here to download ENSCHIG00000007709's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000007709's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000007709	SMG5	99	44.543	ENSCHIG00000006323	-	99	44.587

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000007709	SMG5	100	96.063	ENSG00000198952	SMG5	100	96.063	Homo_sapiens
ENSCHIG00000007709	SMG5	99	67.913	ENSAPOG00000019690	smg5	93	77.494	Acanthochromis_polyacanthus
ENSCHIG00000007709	SMG5	98	92.850	ENSAMEG00000014458	SMG5	100	92.850	Ailuropoda_melanoleuca
ENSCHIG00000007709	SMG5	99	65.134	ENSACIG00000001353	smg5	99	67.051	Amphilophus_citrinellus
ENSCHIG00000007709	SMG5	98	64.828	ENSAOCG00000019483	smg5	93	78.638	Amphiprion_ocellaris
ENSCHIG00000007709	SMG5	98	66.270	ENSAPEG00000022949	smg5	93	78.404	Amphiprion_percula
ENSCHIG00000007709	SMG5	99	66.184	ENSATEG00000005348	smg5	99	66.731	Anabas_testudineus
ENSCHIG00000007709	SMG5	98	78.537	ENSAPLG00000010263	SMG5	100	78.244	Anas_platyrhynchos
ENSCHIG00000007709	SMG5	100	95.472	ENSANAG00000032899	SMG5	100	95.472	Aotus_nancymaae
ENSCHIG00000007709	SMG5	99	64.779	ENSACLG00000009311	smg5	99	66.314	Astatotilapia_calliptera
ENSCHIG00000007709	SMG5	100	99.114	ENSBTAG00000009435	SMG5	100	99.114	Bos_taurus
ENSCHIG00000007709	SMG5	99	44.650	ENSBTAG00000021747	-	99	42.940	Bos_taurus
ENSCHIG00000007709	SMG5	100	95.669	ENSCJAG00000005684	SMG5	100	95.669	Callithrix_jacchus
ENSCHIG00000007709	SMG5	100	93.996	ENSCAFG00000016839	SMG5	100	93.996	Canis_familiaris
ENSCHIG00000007709	SMG5	100	93.996	ENSCAFG00020006061	SMG5	100	93.996	Canis_lupus_dingo
ENSCHIG00000007709	SMG5	100	94.789	ENSTSYG00000004099	SMG5	100	93.805	Carlito_syrichta
ENSCHIG00000007709	SMG5	97	73.225	ENSCAPG00000003631	SMG5	100	73.728	Cavia_aperea
ENSCHIG00000007709	SMG5	100	94.401	ENSCPOG00000015696	SMG5	100	94.106	Cavia_porcellus
ENSCHIG00000007709	SMG5	100	95.571	ENSCCAG00000027409	SMG5	100	95.571	Cebus_capucinus
ENSCHIG00000007709	SMG5	100	96.063	ENSCATG00000030539	SMG5	100	96.063	Cercocebus_atys
ENSCHIG00000007709	SMG5	100	94.990	ENSCLAG00000003983	SMG5	100	94.892	Chinchilla_lanigera
ENSCHIG00000007709	SMG5	100	95.965	ENSCSAG00000002120	SMG5	100	95.965	Chlorocebus_sabaeus
ENSCHIG00000007709	SMG5	54	89.051	ENSCHOG00000008741	-	57	89.051	Choloepus_hoffmanni
ENSCHIG00000007709	SMG5	94	77.102	ENSCPBG00000025848	SMG5	100	78.318	Chrysemys_picta_bellii
ENSCHIG00000007709	SMG5	93	34.881	ENSCING00000008706	-	99	34.497	Ciona_intestinalis
ENSCHIG00000007709	SMG5	100	92.126	ENSCANG00000029208	SMG5	100	92.126	Colobus_angolensis_palliatus
ENSCHIG00000007709	SMG5	100	91.945	ENSCGRG00001006336	Smg5	100	91.454	Cricetulus_griseus_chok1gshd
ENSCHIG00000007709	SMG5	98	91.952	ENSCGRG00000005111	Smg5	100	91.440	Cricetulus_griseus_crigri
ENSCHIG00000007709	SMG5	99	64.860	ENSCSEG00000014220	smg5	99	64.844	Cynoglossus_semilaevis
ENSCHIG00000007709	SMG5	99	60.916	ENSCVAG00000000529	smg5	99	61.516	Cyprinodon_variegatus
ENSCHIG00000007709	SMG5	100	90.650	ENSDNOG00000000051	SMG5	100	90.650	Dasypus_novemcinctus
ENSCHIG00000007709	SMG5	92	36.931	ENSDNOG00000039862	-	100	35.195	Dasypus_novemcinctus
ENSCHIG00000007709	SMG5	100	92.927	ENSDORG00000010382	Smg5	100	93.124	Dipodomys_ordii
ENSCHIG00000007709	SMG5	66	36.129	FBgn0019890	Smg5	62	36.129	Drosophila_melanogaster
ENSCHIG00000007709	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSCHIG00000007709	SMG5	90	47.190	ENSEBUG00000003739	smg5	98	47.730	Eptatretus_burgeri
ENSCHIG00000007709	SMG5	100	95.965	ENSEASG00005019122	SMG5	100	95.965	Equus_asinus_asinus
ENSCHIG00000007709	SMG5	100	95.965	ENSECAG00000001389	SMG5	100	95.965	Equus_caballus
ENSCHIG00000007709	SMG5	72	99.135	ENSEEUG00000012690	SMG5	73	99.135	Erinaceus_europaeus
ENSCHIG00000007709	SMG5	99	65.217	ENSELUG00000012585	smg5	99	65.507	Esox_lucius
ENSCHIG00000007709	SMG5	100	93.701	ENSFCAG00000011783	SMG5	100	93.805	Felis_catus
ENSCHIG00000007709	SMG5	58	82.471	ENSFALG00000001166	-	99	82.580	Ficedula_albicollis
ENSCHIG00000007709	SMG5	98	92.044	ENSFDAG00000017388	SMG5	100	91.944	Fukomys_damarensis
ENSCHIG00000007709	SMG5	97	61.638	ENSFHEG00000013939	smg5	95	68.051	Fundulus_heteroclitus
ENSCHIG00000007709	SMG5	99	61.160	ENSGMOG00000007310	smg5	93	76.765	Gadus_morhua
ENSCHIG00000007709	SMG5	99	77.917	ENSGALG00000029918	-	100	77.429	Gallus_gallus
ENSCHIG00000007709	SMG5	50	51.515	ENSGAFG00000021691	smg5	96	67.093	Gambusia_affinis
ENSCHIG00000007709	SMG5	100	78.843	ENSGAGG00000016131	SMG5	100	79.012	Gopherus_agassizii
ENSCHIG00000007709	SMG5	100	95.768	ENSGGOG00000010932	SMG5	100	95.768	Gorilla_gorilla
ENSCHIG00000007709	SMG5	99	64.947	ENSHBUG00000008654	smg5	99	66.318	Haplochromis_burtoni
ENSCHIG00000007709	SMG5	100	92.141	ENSHGLG00000019152	SMG5	100	92.338	Heterocephalus_glaber_female
ENSCHIG00000007709	SMG5	90	92.333	ENSHGLG00100015948	SMG5	99	92.552	Heterocephalus_glaber_male
ENSCHIG00000007709	SMG5	86	72.947	ENSHCOG00000010229	smg5	84	73.350	Hippocampus_comes
ENSCHIG00000007709	SMG5	50	59.444	ENSIPUG00000006624	Smg5	99	61.960	Ictalurus_punctatus
ENSCHIG00000007709	SMG5	100	95.079	ENSSTOG00000001780	SMG5	100	95.079	Ictidomys_tridecemlineatus
ENSCHIG00000007709	SMG5	100	91.560	ENSJJAG00000022763	Smg5	100	91.168	Jaculus_jaculus
ENSCHIG00000007709	SMG5	50	58.974	ENSKMAG00000014586	smg5	99	61.689	Kryptolebias_marmoratus
ENSCHIG00000007709	SMG5	99	65.830	ENSLBEG00000002145	smg5	93	78.923	Labrus_bergylta
ENSCHIG00000007709	SMG5	100	64.633	ENSLACG00000010521	SMG5	100	64.633	Latimeria_chalumnae
ENSCHIG00000007709	SMG5	96	78.404	ENSLOCG00000008380	smg5	92	78.487	Lepisosteus_oculatus
ENSCHIG00000007709	SMG5	100	93.701	ENSLAFG00000006241	SMG5	100	93.701	Loxodonta_africana
ENSCHIG00000007709	SMG5	100	95.965	ENSMFAG00000045357	SMG5	100	95.965	Macaca_fascicularis
ENSCHIG00000007709	SMG5	100	95.965	ENSMMUG00000000090	SMG5	100	95.965	Macaca_mulatta
ENSCHIG00000007709	SMG5	100	95.866	ENSMNEG00000044425	SMG5	100	95.866	Macaca_nemestrina
ENSCHIG00000007709	SMG5	100	89.706	ENSMLEG00000041192	SMG5	100	89.706	Mandrillus_leucophaeus
ENSCHIG00000007709	SMG5	99	61.909	ENSMAMG00000010683	smg5	100	60.586	Mastacembelus_armatus
ENSCHIG00000007709	SMG5	63	58.045	ENSMZEG00005016543	smg5	100	59.758	Maylandia_zebra
ENSCHIG00000007709	SMG5	99	63.238	ENSMZEG00005015815	smg5	99	64.914	Maylandia_zebra
ENSCHIG00000007709	SMG5	100	90.668	ENSMAUG00000010381	Smg5	100	90.373	Mesocricetus_auratus
ENSCHIG00000007709	SMG5	100	95.571	ENSMICG00000002257	SMG5	100	95.571	Microcebus_murinus
ENSCHIG00000007709	SMG5	100	90.392	ENSMOCG00000016590	Smg5	100	90.098	Microtus_ochrogaster
ENSCHIG00000007709	SMG5	99	59.107	ENSMMOG00000017199	smg5	99	59.030	Mola_mola
ENSCHIG00000007709	SMG5	76	39.108	ENSMODG00000004735	-	87	39.200	Monodelphis_domestica
ENSCHIG00000007709	SMG5	97	34.946	ENSMODG00000004511	-	99	33.984	Monodelphis_domestica
ENSCHIG00000007709	SMG5	78	37.280	ENSMODG00000010675	-	84	37.401	Monodelphis_domestica
ENSCHIG00000007709	SMG5	93	36.585	ENSMODG00000004532	-	87	37.867	Monodelphis_domestica
ENSCHIG00000007709	SMG5	87	89.077	ENSMODG00000016901	SMG5	98	88.063	Monodelphis_domestica
ENSCHIG00000007709	SMG5	99	60.641	ENSMALG00000010375	smg5	55	55.195	Monopterus_albus
ENSCHIG00000007709	SMG5	100	91.552	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCHIG00000007709	SMG5	100	91.650	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCHIG00000007709	SMG5	100	91.266	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCHIG00000007709	SMG5	100	91.454	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCHIG00000007709	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.842	Mustela_putorius_furo
ENSCHIG00000007709	SMG5	100	92.864	ENSMLUG00000008518	SMG5	100	92.955	Myotis_lucifugus
ENSCHIG00000007709	SMG5	98	44.766	ENSNGAG00000012101	-	98	44.599	Nannospalax_galili
ENSCHIG00000007709	SMG5	100	92.724	ENSNGAG00000020706	Smg5	100	92.724	Nannospalax_galili
ENSCHIG00000007709	SMG5	97	63.564	ENSNBRG00000004332	smg5	98	64.322	Neolamprologus_brichardi
ENSCHIG00000007709	SMG5	100	95.571	ENSNLEG00000012439	SMG5	100	95.571	Nomascus_leucogenys
ENSCHIG00000007709	SMG5	100	87.414	ENSMEUG00000012834	SMG5	100	87.807	Notamacropus_eugenii
ENSCHIG00000007709	SMG5	100	93.701	ENSOPRG00000009152	SMG5	100	93.701	Ochotona_princeps
ENSCHIG00000007709	SMG5	100	94.390	ENSODEG00000012237	SMG5	100	94.390	Octodon_degus
ENSCHIG00000007709	SMG5	89	40.984	ENSOCUG00000023338	-	99	40.372	Oryctolagus_cuniculus
ENSCHIG00000007709	SMG5	98	94.859	ENSOCUG00000012886	SMG5	100	94.859	Oryctolagus_cuniculus
ENSCHIG00000007709	SMG5	99	64.327	ENSORLG00020013127	smg5	99	66.373	Oryzias_latipes_hni
ENSCHIG00000007709	SMG5	99	64.043	ENSORLG00015019014	smg5	99	66.277	Oryzias_latipes_hsok
ENSCHIG00000007709	SMG5	82	60.215	ENSOMEG00000021330	smg5	92	60.430	Oryzias_melastigma
ENSCHIG00000007709	SMG5	100	94.094	ENSOGAG00000004966	SMG5	100	94.094	Otolemur_garnettii
ENSCHIG00000007709	SMG5	99	44.990	ENSOARG00000011963	-	99	43.052	Ovis_aries
ENSCHIG00000007709	SMG5	100	99.902	ENSOARG00000005778	SMG5	100	99.902	Ovis_aries
ENSCHIG00000007709	SMG5	100	95.768	ENSPPAG00000011996	SMG5	100	95.768	Pan_paniscus
ENSCHIG00000007709	SMG5	98	93.548	ENSPPRG00000011901	SMG5	100	93.548	Panthera_pardus
ENSCHIG00000007709	SMG5	99	85.473	ENSPTIG00000007892	SMG5	98	86.134	Panthera_tigris_altaica
ENSCHIG00000007709	SMG5	100	95.965	ENSPTRG00000023925	SMG5	100	95.965	Pan_troglodytes
ENSCHIG00000007709	SMG5	100	95.965	ENSPTRG00000049282	-	100	95.965	Pan_troglodytes
ENSCHIG00000007709	SMG5	100	96.063	ENSPANG00000011201	SMG5	100	96.063	Papio_anubis
ENSCHIG00000007709	SMG5	99	65.558	ENSPKIG00000009402	smg5	99	65.689	Paramormyrops_kingsleyae
ENSCHIG00000007709	SMG5	98	80.040	ENSPSIG00000015198	SMG5	100	80.139	Pelodiscus_sinensis
ENSCHIG00000007709	SMG5	99	61.106	ENSPMGG00000010465	smg5	99	60.444	Periophthalmus_magnuspinnatus
ENSCHIG00000007709	SMG5	100	91.847	ENSPEMG00000001819	Smg5	100	91.454	Peromyscus_maniculatus_bairdii
ENSCHIG00000007709	SMG5	56	46.585	ENSPEMG00000010022	-	95	45.017	Peromyscus_maniculatus_bairdii
ENSCHIG00000007709	SMG5	99	50.144	ENSPMAG00000000410	smg5	100	50.236	Petromyzon_marinus
ENSCHIG00000007709	SMG5	100	88.900	ENSPCIG00000018938	SMG5	100	88.016	Phascolarctos_cinereus
ENSCHIG00000007709	SMG5	50	60.223	ENSPFOG00000010191	smg5	99	62.366	Poecilia_formosa
ENSCHIG00000007709	SMG5	50	60.409	ENSPLAG00000009332	smg5	99	62.097	Poecilia_latipinna
ENSCHIG00000007709	SMG5	99	65.865	ENSPMEG00000014105	smg5	99	65.679	Poecilia_mexicana
ENSCHIG00000007709	SMG5	93	76.697	ENSPREG00000017713	smg5	99	62.007	Poecilia_reticulata
ENSCHIG00000007709	SMG5	100	95.965	ENSPPYG00000000723	SMG5	100	95.965	Pongo_abelii
ENSCHIG00000007709	SMG5	81	85.654	ENSPCAG00000008412	SMG5	88	85.654	Procavia_capensis
ENSCHIG00000007709	SMG5	100	95.571	ENSPCOG00000004741	SMG5	100	95.571	Propithecus_coquereli
ENSCHIG00000007709	SMG5	100	85.531	ENSPVAG00000016748	SMG5	100	85.531	Pteropus_vampyrus
ENSCHIG00000007709	SMG5	99	59.736	ENSPNYG00000013397	smg5	99	61.396	Pundamilia_nyererei
ENSCHIG00000007709	SMG5	100	91.552	ENSRNOG00000019590	Smg5	100	91.061	Rattus_norvegicus
ENSCHIG00000007709	SMG5	100	95.768	ENSRBIG00000027428	SMG5	100	95.768	Rhinopithecus_bieti
ENSCHIG00000007709	SMG5	100	95.669	ENSRROG00000030035	SMG5	100	95.669	Rhinopithecus_roxellana
ENSCHIG00000007709	SMG5	100	95.768	ENSSBOG00000033339	SMG5	100	95.768	Saimiri_boliviensis_boliviensis
ENSCHIG00000007709	SMG5	64	39.181	ENSSHAG00000000935	-	80	40.244	Sarcophilus_harrisii
ENSCHIG00000007709	SMG5	88	39.633	ENSSHAG00000000561	-	86	39.633	Sarcophilus_harrisii
ENSCHIG00000007709	SMG5	98	88.388	ENSSHAG00000014163	SMG5	100	87.487	Sarcophilus_harrisii
ENSCHIG00000007709	SMG5	99	34.115	ENSSHAG00000009572	-	99	32.540	Sarcophilus_harrisii
ENSCHIG00000007709	SMG5	99	66.342	ENSSFOG00015024175	smg5	99	66.146	Scleropages_formosus
ENSCHIG00000007709	SMG5	99	61.165	ENSSDUG00000007122	smg5	93	77.209	Seriola_dumerili
ENSCHIG00000007709	SMG5	99	61.293	ENSSLDG00000011418	smg5	93	77.934	Seriola_lalandi_dorsalis
ENSCHIG00000007709	SMG5	90	81.025	ENSSARG00000012484	SMG5	100	81.025	Sorex_araneus
ENSCHIG00000007709	SMG5	94	77.609	ENSSPUG00000002260	SMG5	100	76.596	Sphenodon_punctatus
ENSCHIG00000007709	SMG5	99	66.152	ENSSPAG00000014266	smg5	99	65.184	Stegastes_partitus
ENSCHIG00000007709	SMG5	99	73.990	ENSSSCG00000039308	-	100	75.074	Sus_scrofa
ENSCHIG00000007709	SMG5	100	96.949	ENSSSCG00000006490	-	100	96.949	Sus_scrofa
ENSCHIG00000007709	SMG5	53	35.921	ENSSSCG00000037182	-	65	42.025	Sus_scrofa
ENSCHIG00000007709	SMG5	99	79.921	ENSTGUG00000003748	-	100	79.688	Taeniopygia_guttata
ENSCHIG00000007709	SMG5	99	64.417	ENSTRUG00000012580	smg5	99	64.093	Takifugu_rubripes
ENSCHIG00000007709	SMG5	99	65.373	ENSTNIG00000010303	smg5	99	65.243	Tetraodon_nigroviridis
ENSCHIG00000007709	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCHIG00000007709	SMG5	100	91.929	ENSTTRG00000001401	SMG5	100	91.929	Tursiops_truncatus
ENSCHIG00000007709	SMG5	100	93.504	ENSUAMG00000013721	SMG5	100	93.504	Ursus_americanus
ENSCHIG00000007709	SMG5	98	89.045	ENSUMAG00000018041	SMG5	97	89.146	Ursus_maritimus
ENSCHIG00000007709	SMG5	98	86.579	ENSVPAG00000009446	SMG5	99	86.579	Vicugna_pacos
ENSCHIG00000007709	SMG5	100	93.701	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSCHIG00000007709	SMG5	77	65.826	ENSXETG00000033791	SMG5	99	65.322	Xenopus_tropicalis
ENSCHIG00000007709	SMG5	59	78.199	ENSXCOG00000004379	smg5	96	68.132	Xiphophorus_couchianus
ENSCHIG00000007709	SMG5	99	65.988	ENSXMAG00000013499	smg5	99	65.670	Xiphophorus_maculatus