EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000008230 (Gene tree)
Gene ID: 106501728
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 114058 bases
Position: chr14:12245947-12360004
Accession: 102186978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000004011	ResIII	PF04851.15	4.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000011341	-	5326	XM_005689235	ENSCHIP00000004011	909 (aa)	XP_005689292	UPI0008468F85
ENSCHIT00000011401	-	900	XM_005689237	ENSCHIP00000004048	299 (aa)	XP_005689294	UPI00029D7123
ENSCHIT00000011356	-	1790	-	ENSCHIP00000004020	121 (aa)	-	UPI000D1928D0

Gene Model

Click here to download ENSCHIG00000008230's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000008230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000008230	-	55	31.518	ENSCHIG00000013871	CHD1L	51	31.518
ENSCHIG00000008230	-	70	45.399	ENSCHIG00000020118	RAD54L	82	45.399
ENSCHIG00000008230	-	52	35.922	ENSCHIG00000019462	HELLS	55	35.922
ENSCHIG00000008230	-	60	33.095	ENSCHIG00000009837	SMARCA1	50	32.253

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000008230	-	99	85.149	ENSG00000197275	RAD54B	99	85.149	Homo_sapiens
ENSCHIG00000008230	-	80	88.276	ENSG00000265817	FSBP	99	88.276	Homo_sapiens
ENSCHIG00000008230	-	100	87.267	ENSAMEG00000005834	-	100	87.267	Ailuropoda_melanoleuca
ENSCHIG00000008230	-	99	55.022	ENSACIG00000013005	rad54b	99	55.022	Amphilophus_citrinellus
ENSCHIG00000008230	-	99	54.839	ENSAOCG00000008523	rad54b	99	54.487	Amphiprion_ocellaris
ENSCHIG00000008230	-	99	54.762	ENSAPEG00000001673	rad54b	99	54.870	Amphiprion_percula
ENSCHIG00000008230	-	99	54.874	ENSATEG00000001527	rad54b	99	54.874	Anabas_testudineus
ENSCHIG00000008230	-	99	67.541	ENSAPLG00000014366	-	99	67.541	Anas_platyrhynchos
ENSCHIG00000008230	-	88	71.000	ENSACAG00000003671	-	99	71.000	Anolis_carolinensis
ENSCHIG00000008230	-	71	85.935	ENSANAG00000019528	-	99	85.935	Aotus_nancymaae
ENSCHIG00000008230	-	86	60.101	ENSACLG00000007826	rad54b	92	60.101	Astatotilapia_calliptera
ENSCHIG00000008230	-	85	58.471	ENSAMXG00000039985	rad54b	95	58.291	Astyanax_mexicanus
ENSCHIG00000008230	-	100	97.690	ENSBTAG00000000632	RAD54B	100	97.690	Bos_taurus
ENSCHIG00000008230	-	69	39.350	WBGene00013792	Y116A8C.13	83	34.806	Caenorhabditis_elegans
ENSCHIG00000008230	-	99	84.158	ENSCJAG00000000080	-	99	86.740	Callithrix_jacchus
ENSCHIG00000008230	-	100	85.510	ENSCAFG00000009179	RAD54B	99	85.510	Canis_familiaris
ENSCHIG00000008230	-	100	85.291	ENSCAFG00020012084	-	99	85.291	Canis_lupus_dingo
ENSCHIG00000008230	-	100	84.066	ENSTSYG00000013234	-	100	84.066	Carlito_syrichta
ENSCHIG00000008230	-	100	80.659	ENSCPOG00000011643	-	99	80.659	Cavia_porcellus
ENSCHIG00000008230	-	99	84.048	ENSCCAG00000011754	-	99	86.878	Cebus_capucinus
ENSCHIG00000008230	-	99	84.802	ENSCATG00000030661	-	99	88.122	Cercocebus_atys
ENSCHIG00000008230	-	99	81.848	ENSCLAG00000010476	-	99	81.848	Chinchilla_lanigera
ENSCHIG00000008230	-	99	84.802	ENSCSAG00000012712	-	99	84.802	Chlorocebus_sabaeus
ENSCHIG00000008230	-	99	69.029	ENSCPBG00000003204	-	99	69.514	Chrysemys_picta_bellii
ENSCHIG00000008230	-	99	85.352	ENSCANG00000017939	-	99	88.398	Colobus_angolensis_palliatus
ENSCHIG00000008230	-	100	77.193	ENSCGRG00001020184	Rad54b	100	77.193	Cricetulus_griseus_chok1gshd
ENSCHIG00000008230	-	100	75.987	ENSCGRG00000016752	Rad54b	100	75.987	Cricetulus_griseus_crigri
ENSCHIG00000008230	-	86	58.965	ENSCSEG00000001601	rad54b	93	58.942	Cynoglossus_semilaevis
ENSCHIG00000008230	-	99	56.987	ENSCVAG00000009200	rad54b	99	56.987	Cyprinodon_variegatus
ENSCHIG00000008230	-	100	53.275	ENSDARG00000092134	rad54b	100	59.908	Danio_rerio
ENSCHIG00000008230	-	99	83.352	ENSDNOG00000015535	-	99	83.352	Dasypus_novemcinctus
ENSCHIG00000008230	-	100	81.209	ENSDORG00000002492	Rad54b	100	81.209	Dipodomys_ordii
ENSCHIG00000008230	-	87	80.862	ENSETEG00000010605	-	100	80.862	Echinops_telfairi
ENSCHIG00000008230	-	99	46.479	ENSEBUG00000009104	rad54b	98	46.444	Eptatretus_burgeri
ENSCHIG00000008230	-	97	86.425	ENSEASG00005004021	-	100	86.425	Equus_asinus_asinus
ENSCHIG00000008230	-	100	86.937	ENSECAG00000021949	-	99	86.937	Equus_caballus
ENSCHIG00000008230	-	79	84.472	ENSEEUG00000008056	-	79	84.472	Erinaceus_europaeus
ENSCHIG00000008230	-	99	53.583	ENSELUG00000009287	rad54b	99	53.961	Esox_lucius
ENSCHIG00000008230	-	100	86.498	ENSFCAG00000015513	-	100	90.083	Felis_catus
ENSCHIG00000008230	-	99	66.415	ENSFALG00000005467	-	99	66.415	Ficedula_albicollis
ENSCHIG00000008230	-	99	81.958	ENSFDAG00000020541	-	100	81.958	Fukomys_damarensis
ENSCHIG00000008230	-	89	57.966	ENSFHEG00000014382	rad54b	89	58.088	Fundulus_heteroclitus
ENSCHIG00000008230	-	86	56.821	ENSGMOG00000014774	rad54b	98	56.821	Gadus_morhua
ENSCHIG00000008230	-	99	65.980	ENSGALG00000043597	RAD54B	99	65.980	Gallus_gallus
ENSCHIG00000008230	-	99	55.048	ENSGAFG00000007901	rad54b	99	55.202	Gambusia_affinis
ENSCHIG00000008230	-	99	55.676	ENSGACG00000009128	rad54b	99	55.676	Gasterosteus_aculeatus
ENSCHIG00000008230	-	99	68.818	ENSGAGG00000018747	-	99	68.818	Gopherus_agassizii
ENSCHIG00000008230	-	100	84.725	ENSGGOG00000023516	-	100	84.725	Gorilla_gorilla
ENSCHIG00000008230	-	99	54.749	ENSHBUG00000016017	rad54b	99	54.749	Haplochromis_burtoni
ENSCHIG00000008230	-	100	80.153	ENSHGLG00000008263	RAD54B	99	80.153	Heterocephalus_glaber_female
ENSCHIG00000008230	-	100	79.415	ENSHGLG00100008108	-	99	79.415	Heterocephalus_glaber_male
ENSCHIG00000008230	-	99	54.466	ENSHCOG00000004764	rad54b	98	56.420	Hippocampus_comes
ENSCHIG00000008230	-	100	51.903	ENSIPUG00000018531	rad54b	99	51.903	Ictalurus_punctatus
ENSCHIG00000008230	-	99	81.657	ENSSTOG00000010791	-	99	81.657	Ictidomys_tridecemlineatus
ENSCHIG00000008230	-	100	79.473	ENSJJAG00000010314	Rad54b	100	79.473	Jaculus_jaculus
ENSCHIG00000008230	-	99	54.158	ENSKMAG00000004744	rad54b	99	54.158	Kryptolebias_marmoratus
ENSCHIG00000008230	-	82	68.767	ENSLACG00000000859	-	100	68.767	Latimeria_chalumnae
ENSCHIG00000008230	-	99	58.805	ENSLOCG00000010100	rad54b	96	63.492	Lepisosteus_oculatus
ENSCHIG00000008230	-	89	85.272	ENSLAFG00000015315	-	100	85.272	Loxodonta_africana
ENSCHIG00000008230	-	99	84.802	ENSMFAG00000031629	-	99	87.983	Macaca_fascicularis
ENSCHIG00000008230	-	99	84.802	ENSMMUG00000005659	-	99	84.802	Macaca_mulatta
ENSCHIG00000008230	-	99	84.581	ENSMNEG00000016408	-	99	84.581	Macaca_nemestrina
ENSCHIG00000008230	-	99	84.802	ENSMLEG00000006946	-	99	84.802	Mandrillus_leucophaeus
ENSCHIG00000008230	-	99	55.411	ENSMAMG00000012269	rad54b	99	55.411	Mastacembelus_armatus
ENSCHIG00000008230	-	99	54.770	ENSMZEG00005005281	rad54b	95	60.101	Maylandia_zebra
ENSCHIG00000008230	-	99	66.343	ENSMGAG00000012024	-	99	66.343	Meleagris_gallopavo
ENSCHIG00000008230	-	100	76.535	ENSMAUG00000013586	Rad54b	100	76.535	Mesocricetus_auratus
ENSCHIG00000008230	-	99	82.398	ENSMICG00000000754	-	99	82.398	Microcebus_murinus
ENSCHIG00000008230	-	100	74.918	ENSMOCG00000020035	Rad54b	99	74.918	Microtus_ochrogaster
ENSCHIG00000008230	-	99	54.694	ENSMMOG00000003394	rad54b	99	54.694	Mola_mola
ENSCHIG00000008230	-	88	77.335	ENSMODG00000007343	-	99	77.335	Monodelphis_domestica
ENSCHIG00000008230	-	71	60.340	ENSMALG00000001520	rad54b	99	60.340	Monopterus_albus
ENSCHIG00000008230	-	100	76.206	MGP_CAROLIEiJ_G0025810	Rad54b	100	76.206	Mus_caroli
ENSCHIG00000008230	-	100	76.290	ENSMUSG00000078773	Rad54b	100	76.290	Mus_musculus
ENSCHIG00000008230	-	100	76.948	MGP_PahariEiJ_G0023933	Rad54b	100	76.948	Mus_pahari
ENSCHIG00000008230	-	100	76.729	MGP_SPRETEiJ_G0026758	Rad54b	100	76.729	Mus_spretus
ENSCHIG00000008230	-	89	89.136	ENSMPUG00000008878	-	100	89.136	Mustela_putorius_furo
ENSCHIG00000008230	-	99	83.754	ENSMLUG00000008953	-	99	83.754	Myotis_lucifugus
ENSCHIG00000008230	-	100	81.243	ENSNGAG00000017537	Rad54b	100	81.243	Nannospalax_galili
ENSCHIG00000008230	-	86	60.101	ENSNBRG00000013394	rad54b	92	60.101	Neolamprologus_brichardi
ENSCHIG00000008230	-	99	85.479	ENSNLEG00000003062	-	99	88.414	Nomascus_leucogenys
ENSCHIG00000008230	-	71	73.383	ENSMEUG00000012426	-	71	73.383	Notamacropus_eugenii
ENSCHIG00000008230	-	100	80.659	ENSODEG00000019564	-	100	80.659	Octodon_degus
ENSCHIG00000008230	-	89	78.191	ENSODEG00000002650	-	96	84.284	Octodon_degus
ENSCHIG00000008230	-	99	55.043	ENSONIG00000006067	rad54b	99	55.043	Oreochromis_niloticus
ENSCHIG00000008230	-	83	75.564	ENSOANG00000011348	-	100	75.564	Ornithorhynchus_anatinus
ENSCHIG00000008230	-	100	82.547	ENSOCUG00000016478	-	99	82.547	Oryctolagus_cuniculus
ENSCHIG00000008230	-	99	54.747	ENSORLG00000008918	rad54b	99	62.751	Oryzias_latipes
ENSCHIG00000008230	-	71	62.751	ENSORLG00020012171	rad54b	99	62.751	Oryzias_latipes_hni
ENSCHIG00000008230	-	99	55.474	ENSORLG00015018536	rad54b	99	55.474	Oryzias_latipes_hsok
ENSCHIG00000008230	-	84	60.982	ENSOMEG00000004345	rad54b	99	60.982	Oryzias_melastigma
ENSCHIG00000008230	-	99	82.857	ENSOGAG00000007854	-	99	82.857	Otolemur_garnettii
ENSCHIG00000008230	-	89	98.150	ENSOARG00000007691	-	100	98.150	Ovis_aries
ENSCHIG00000008230	-	99	83.498	ENSPPAG00000029572	-	99	83.498	Pan_paniscus
ENSCHIG00000008230	-	100	86.828	ENSPPRG00000007571	-	100	90.358	Panthera_pardus
ENSCHIG00000008230	-	80	90.220	ENSPTIG00000012670	-	100	90.220	Panthera_tigris_altaica
ENSCHIG00000008230	-	99	85.039	ENSPTRG00000020427	-	99	88.138	Pan_troglodytes
ENSCHIG00000008230	-	99	84.912	ENSPANG00000019566	-	99	84.912	Papio_anubis
ENSCHIG00000008230	-	99	57.768	ENSPKIG00000014974	rad54b	99	57.768	Paramormyrops_kingsleyae
ENSCHIG00000008230	-	99	66.847	ENSPSIG00000002383	-	98	72.727	Pelodiscus_sinensis
ENSCHIG00000008230	-	100	77.303	ENSPEMG00000012133	Rad54b	100	77.303	Peromyscus_maniculatus_bairdii
ENSCHIG00000008230	-	87	57.214	ENSPMAG00000002916	rad54b	99	57.587	Petromyzon_marinus
ENSCHIG00000008230	-	89	77.571	ENSPCIG00000020151	-	94	77.653	Phascolarctos_cinereus
ENSCHIG00000008230	-	99	55.957	ENSPFOG00000023411	rad54b	99	55.957	Poecilia_formosa
ENSCHIG00000008230	-	99	56.170	ENSPLAG00000010430	rad54b	99	56.170	Poecilia_latipinna
ENSCHIG00000008230	-	99	55.957	ENSPMEG00000016873	rad54b	99	55.957	Poecilia_mexicana
ENSCHIG00000008230	-	99	56.407	ENSPREG00000018443	rad54b	99	56.407	Poecilia_reticulata
ENSCHIG00000008230	-	99	85.039	ENSPPYG00000018750	-	99	85.039	Pongo_abelii
ENSCHIG00000008230	-	99	86.044	ENSPCOG00000026845	-	99	88.690	Propithecus_coquereli
ENSCHIG00000008230	-	88	88.949	ENSPVAG00000000261	-	92	88.949	Pteropus_vampyrus
ENSCHIG00000008230	-	87	59.773	ENSPNYG00000018303	rad54b	96	59.773	Pundamilia_nyererei
ENSCHIG00000008230	-	99	53.598	ENSPNAG00000000295	rad54b	99	53.598	Pygocentrus_nattereri
ENSCHIG00000008230	-	100	73.765	ENSRNOG00000039949	Rad54b	100	73.765	Rattus_norvegicus
ENSCHIG00000008230	-	99	84.692	ENSRBIG00000020419	-	99	84.692	Rhinopithecus_bieti
ENSCHIG00000008230	-	99	84.692	ENSRROG00000039897	-	99	84.692	Rhinopithecus_roxellana
ENSCHIG00000008230	-	82	36.925	YBR073W	RDH54	82	37.333	Saccharomyces_cerevisiae
ENSCHIG00000008230	-	99	83.718	ENSSBOG00000028501	-	99	83.718	Saimiri_boliviensis_boliviensis
ENSCHIG00000008230	-	99	72.558	ENSSHAG00000017038	-	99	72.558	Sarcophilus_harrisii
ENSCHIG00000008230	-	65	64.736	ENSSFOG00015008483	rad54b	91	64.736	Scleropages_formosus
ENSCHIG00000008230	-	86	59.398	ENSSMAG00000018659	rad54b	99	54.298	Scophthalmus_maximus
ENSCHIG00000008230	-	99	53.674	ENSSDUG00000001122	rad54b	98	53.674	Seriola_dumerili
ENSCHIG00000008230	-	99	53.530	ENSSLDG00000013787	rad54b	99	53.530	Seriola_lalandi_dorsalis
ENSCHIG00000008230	-	99	67.541	ENSSPUG00000016497	-	99	67.541	Sphenodon_punctatus
ENSCHIG00000008230	-	99	55.386	ENSSPAG00000012800	rad54b	99	55.386	Stegastes_partitus
ENSCHIG00000008230	-	99	87.004	ENSSSCG00000006101	-	99	90.100	Sus_scrofa
ENSCHIG00000008230	-	99	67.065	ENSTGUG00000011880	-	99	67.065	Taeniopygia_guttata
ENSCHIG00000008230	-	99	54.109	ENSTRUG00000010015	rad54b	99	54.584	Takifugu_rubripes
ENSCHIG00000008230	-	100	87.129	ENSTTRG00000006312	-	100	87.129	Tursiops_truncatus
ENSCHIG00000008230	-	100	87.267	ENSUMAG00000016401	-	100	87.267	Ursus_maritimus
ENSCHIG00000008230	-	100	87.349	ENSVPAG00000003157	-	100	87.349	Vicugna_pacos
ENSCHIG00000008230	-	99	54.835	ENSXETG00000025924	rad54b	99	59.102	Xenopus_tropicalis
ENSCHIG00000008230	-	99	56.298	ENSXMAG00000013141	rad54b	99	56.188	Xiphophorus_maculatus