EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000008682 (Gene tree)
Gene ID: 102186132
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 22169 bases
Position: chrLWLT01000036.1:620431-642599
Accession: 102186132
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000004521	Smg4_UPF3	PF03467.15	1.4e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000011977	UPF3A-201	1512	XM_018044973	ENSCHIP00000004521	503 (aa)	XP_017900462	UPI000D197C6B

Gene Model

Click here to download ENSCHIG00000008682's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000008682's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000008682	UPF3A	81	38.257	ENSCHIG00000011454	-	89	35.593

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000008682	UPF3A	94	72.746	ENSG00000169062	UPF3A	96	72.668	Homo_sapiens
ENSCHIG00000008682	UPF3A	51	59.023	ENSAPOG00000012775	upf3b	88	49.153	Acanthochromis_polyacanthus
ENSCHIG00000008682	UPF3A	85	55.324	ENSAPOG00000013484	upf3a	89	55.324	Acanthochromis_polyacanthus
ENSCHIG00000008682	UPF3A	88	73.407	ENSAMEG00000004259	UPF3A	99	73.407	Ailuropoda_melanoleuca
ENSCHIG00000008682	UPF3A	85	52.097	ENSACIG00000020468	upf3a	69	82.524	Amphilophus_citrinellus
ENSCHIG00000008682	UPF3A	85	55.324	ENSAOCG00000020784	upf3a	88	55.324	Amphiprion_ocellaris
ENSCHIG00000008682	UPF3A	51	57.143	ENSAOCG00000000706	upf3b	88	47.188	Amphiprion_ocellaris
ENSCHIG00000008682	UPF3A	85	55.324	ENSAPEG00000003519	upf3a	88	55.324	Amphiprion_percula
ENSCHIG00000008682	UPF3A	51	59.023	ENSAPEG00000005545	upf3b	90	48.113	Amphiprion_percula
ENSCHIG00000008682	UPF3A	85	54.503	ENSATEG00000005843	upf3a	88	54.503	Anabas_testudineus
ENSCHIG00000008682	UPF3A	76	68.241	ENSACAG00000001540	UPF3A	92	68.241	Anolis_carolinensis
ENSCHIG00000008682	UPF3A	77	46.154	ENSACAG00000003625	UPF3B	85	46.517	Anolis_carolinensis
ENSCHIG00000008682	UPF3A	77	44.254	ENSANAG00000025598	-	83	45.255	Aotus_nancymaae
ENSCHIG00000008682	UPF3A	91	73.420	ENSANAG00000021713	UPF3A	96	73.420	Aotus_nancymaae
ENSCHIG00000008682	UPF3A	85	52.667	ENSACLG00000026274	upf3a	83	54.348	Astatotilapia_calliptera
ENSCHIG00000008682	UPF3A	84	54.630	ENSAMXG00000002608	upf3a	89	55.238	Astyanax_mexicanus
ENSCHIG00000008682	UPF3A	90	71.991	ENSCJAG00000019102	UPF3A	96	72.017	Callithrix_jacchus
ENSCHIG00000008682	UPF3A	90	73.348	ENSCAFG00000006504	UPF3A	94	73.455	Canis_familiaris
ENSCHIG00000008682	UPF3A	93	71.757	ENSCAFG00020014268	UPF3A	96	71.800	Canis_lupus_dingo
ENSCHIG00000008682	UPF3A	77	39.547	ENSCAFG00020004074	UPF3B	84	44.938	Canis_lupus_dingo
ENSCHIG00000008682	UPF3A	72	62.667	ENSTSYG00000001918	UPF3A	100	62.667	Carlito_syrichta
ENSCHIG00000008682	UPF3A	83	60.859	ENSCPOG00000006824	UPF3A	96	61.151	Cavia_porcellus
ENSCHIG00000008682	UPF3A	91	74.034	ENSCCAG00000018406	UPF3A	94	73.778	Cebus_capucinus
ENSCHIG00000008682	UPF3A	94	72.327	ENSCATG00000029733	UPF3A	96	72.017	Cercocebus_atys
ENSCHIG00000008682	UPF3A	94	71.458	ENSCSAG00000017388	UPF3A	96	71.121	Chlorocebus_sabaeus
ENSCHIG00000008682	UPF3A	86	65.517	ENSCGRG00001017387	Upf3a	99	65.287	Cricetulus_griseus_chok1gshd
ENSCHIG00000008682	UPF3A	86	65.057	ENSCGRG00000001468	Upf3a	96	65.394	Cricetulus_griseus_crigri
ENSCHIG00000008682	UPF3A	76	44.304	ENSCGRG00000007627	Upf3b	93	49.750	Cricetulus_griseus_crigri
ENSCHIG00000008682	UPF3A	76	47.044	ENSCSEG00000002046	upf3b	85	49.279	Cynoglossus_semilaevis
ENSCHIG00000008682	UPF3A	87	53.741	ENSCSEG00000005106	upf3a	91	53.741	Cynoglossus_semilaevis
ENSCHIG00000008682	UPF3A	79	56.500	ENSCVAG00000022333	upf3a	83	56.927	Cyprinodon_variegatus
ENSCHIG00000008682	UPF3A	78	57.071	ENSDARG00000069297	upf3a	85	57.071	Danio_rerio
ENSCHIG00000008682	UPF3A	80	71.084	ENSDNOG00000034391	UPF3A	94	71.154	Dasypus_novemcinctus
ENSCHIG00000008682	UPF3A	94	61.587	ENSETEG00000010110	UPF3A	99	61.795	Echinops_telfairi
ENSCHIG00000008682	UPF3A	77	45.432	ENSEASG00005012919	UPF3B	84	46.898	Equus_asinus_asinus
ENSCHIG00000008682	UPF3A	94	71.488	ENSEASG00005021884	UPF3A	96	71.581	Equus_asinus_asinus
ENSCHIG00000008682	UPF3A	90	71.613	ENSECAG00000017141	UPF3A	96	71.581	Equus_caballus
ENSCHIG00000008682	UPF3A	77	45.432	ENSECAG00000016947	UPF3B	84	46.898	Equus_caballus
ENSCHIG00000008682	UPF3A	85	53.075	ENSELUG00000011050	upf3a	84	55.721	Esox_lucius
ENSCHIG00000008682	UPF3A	90	73.144	ENSFCAG00000014602	UPF3A	96	73.102	Felis_catus
ENSCHIG00000008682	UPF3A	66	56.250	ENSGMOG00000019615	upf3a	100	56.250	Gadus_morhua
ENSCHIG00000008682	UPF3A	85	54.503	ENSGAFG00000021170	upf3a	83	57.323	Gambusia_affinis
ENSCHIG00000008682	UPF3A	93	56.962	ENSGGOG00000043074	-	86	63.171	Gorilla_gorilla
ENSCHIG00000008682	UPF3A	94	72.746	ENSGGOG00000015428	UPF3A	96	72.451	Gorilla_gorilla
ENSCHIG00000008682	UPF3A	85	59.217	ENSGGOG00000041219	-	91	63.081	Gorilla_gorilla
ENSCHIG00000008682	UPF3A	85	54.861	ENSHBUG00000011325	upf3a	83	56.818	Haplochromis_burtoni
ENSCHIG00000008682	UPF3A	76	66.494	ENSHGLG00000001544	UPF3A	84	68.120	Heterocephalus_glaber_female
ENSCHIG00000008682	UPF3A	76	66.494	ENSHGLG00100013244	UPF3A	84	68.120	Heterocephalus_glaber_male
ENSCHIG00000008682	UPF3A	77	46.763	ENSHCOG00000017004	upf3b	87	47.689	Hippocampus_comes
ENSCHIG00000008682	UPF3A	80	47.537	ENSHCOG00000013985	upf3a	71	73.810	Hippocampus_comes
ENSCHIG00000008682	UPF3A	79	56.250	ENSIPUG00000023450	upf3a	84	56.818	Ictalurus_punctatus
ENSCHIG00000008682	UPF3A	85	54.503	ENSKMAG00000004381	upf3a	88	54.503	Kryptolebias_marmoratus
ENSCHIG00000008682	UPF3A	85	49.306	ENSLBEG00000021570	upf3a	83	53.535	Labrus_bergylta
ENSCHIG00000008682	UPF3A	55	43.537	ENSLACG00000006645	UPF3A	89	42.517	Latimeria_chalumnae
ENSCHIG00000008682	UPF3A	86	56.422	ENSLOCG00000002665	upf3a	87	58.722	Lepisosteus_oculatus
ENSCHIG00000008682	UPF3A	76	59.799	ENSLAFG00000023358	UPF3A	93	59.799	Loxodonta_africana
ENSCHIG00000008682	UPF3A	83	41.190	ENSLAFG00000001267	UPF3B	90	48.423	Loxodonta_africana
ENSCHIG00000008682	UPF3A	94	67.975	ENSMFAG00000045016	UPF3A	96	61.966	Macaca_fascicularis
ENSCHIG00000008682	UPF3A	88	70.246	ENSMMUG00000007449	UPF3A	96	67.896	Macaca_mulatta
ENSCHIG00000008682	UPF3A	84	69.635	ENSMNEG00000036402	UPF3A	88	69.676	Macaca_nemestrina
ENSCHIG00000008682	UPF3A	86	68.879	ENSMLEG00000014726	UPF3A	94	71.883	Mandrillus_leucophaeus
ENSCHIG00000008682	UPF3A	85	53.452	ENSMAMG00000018364	upf3a	89	53.452	Mastacembelus_armatus
ENSCHIG00000008682	UPF3A	85	52.667	ENSMZEG00005021571	upf3a	83	54.348	Maylandia_zebra
ENSCHIG00000008682	UPF3A	80	64.428	ENSMGAG00000014837	UPF3A	98	64.428	Meleagris_gallopavo
ENSCHIG00000008682	UPF3A	63	76.899	ENSMOCG00000000550	Upf3a	88	76.190	Microtus_ochrogaster
ENSCHIG00000008682	UPF3A	83	52.055	ENSMMOG00000019751	upf3a	88	52.184	Mola_mola
ENSCHIG00000008682	UPF3A	81	69.458	ENSMODG00000003159	UPF3A	95	69.458	Monodelphis_domestica
ENSCHIG00000008682	UPF3A	80	45.368	ENSMODG00000010232	UPF3B	96	46.556	Monodelphis_domestica
ENSCHIG00000008682	UPF3A	86	67.281	MGP_CAROLIEiJ_G0030848	Upf3a	99	66.820	Mus_caroli
ENSCHIG00000008682	UPF3A	86	68.203	ENSMUSG00000038398	Upf3a	99	67.742	Mus_musculus
ENSCHIG00000008682	UPF3A	86	66.129	MGP_PahariEiJ_G0021311	Upf3a	99	65.668	Mus_pahari
ENSCHIG00000008682	UPF3A	81	42.921	MGP_PahariEiJ_G0031543	Upf3b	84	47.700	Mus_pahari
ENSCHIG00000008682	UPF3A	86	67.512	MGP_SPRETEiJ_G0031958	Upf3a	99	67.051	Mus_spretus
ENSCHIG00000008682	UPF3A	94	73.140	ENSMPUG00000009139	UPF3A	96	73.077	Mustela_putorius_furo
ENSCHIG00000008682	UPF3A	80	72.381	ENSMLUG00000015905	UPF3A	99	72.381	Myotis_lucifugus
ENSCHIG00000008682	UPF3A	86	66.129	ENSNGAG00000019314	Upf3a	99	65.438	Nannospalax_galili
ENSCHIG00000008682	UPF3A	85	54.503	ENSNBRG00000000828	upf3a	83	56.566	Neolamprologus_brichardi
ENSCHIG00000008682	UPF3A	94	71.757	ENSNLEG00000007563	UPF3A	96	71.429	Nomascus_leucogenys
ENSCHIG00000008682	UPF3A	85	54.713	ENSONIG00000006817	upf3a	83	56.784	Oreochromis_niloticus
ENSCHIG00000008682	UPF3A	72	62.125	ENSOANG00000006985	-	95	61.644	Ornithorhynchus_anatinus
ENSCHIG00000008682	UPF3A	91	57.557	ENSOCUG00000008450	UPF3A	93	59.560	Oryctolagus_cuniculus
ENSCHIG00000008682	UPF3A	84	55.245	ENSORLG00000010911	upf3a	83	56.642	Oryzias_latipes
ENSCHIG00000008682	UPF3A	77	41.397	ENSORLG00000001026	upf3b	88	47.922	Oryzias_latipes
ENSCHIG00000008682	UPF3A	76	41.500	ENSORLG00020003758	upf3b	88	47.922	Oryzias_latipes_hni
ENSCHIG00000008682	UPF3A	84	54.824	ENSORLG00020014317	upf3a	87	54.353	Oryzias_latipes_hni
ENSCHIG00000008682	UPF3A	76	41.500	ENSORLG00015012954	upf3b	88	47.922	Oryzias_latipes_hsok
ENSCHIG00000008682	UPF3A	84	55.765	ENSORLG00015017339	upf3a	51	55.294	Oryzias_latipes_hsok
ENSCHIG00000008682	UPF3A	85	53.846	ENSOMEG00000014425	upf3a	83	56.203	Oryzias_melastigma
ENSCHIG00000008682	UPF3A	83	70.673	ENSOGAG00000004788	UPF3A	99	70.673	Otolemur_garnettii
ENSCHIG00000008682	UPF3A	90	87.339	ENSOARG00000009004	UPF3A	91	91.860	Ovis_aries
ENSCHIG00000008682	UPF3A	81	41.469	ENSOARG00000007869	-	97	38.863	Ovis_aries
ENSCHIG00000008682	UPF3A	94	72.059	ENSPPAG00000042267	UPF3A	97	72.234	Pan_paniscus
ENSCHIG00000008682	UPF3A	90	73.144	ENSPPRG00000025062	UPF3A	96	73.102	Panthera_pardus
ENSCHIG00000008682	UPF3A	85	57.834	ENSPTRG00000041835	-	92	58.680	Pan_troglodytes
ENSCHIG00000008682	UPF3A	85	58.295	ENSPTRG00000041187	-	91	60.391	Pan_troglodytes
ENSCHIG00000008682	UPF3A	94	72.327	ENSPTRG00000006073	UPF3A	96	72.234	Pan_troglodytes
ENSCHIG00000008682	UPF3A	85	59.122	ENSPTRG00000051640	-	94	60.000	Pan_troglodytes
ENSCHIG00000008682	UPF3A	94	71.908	ENSPANG00000004346	UPF3A	96	71.584	Papio_anubis
ENSCHIG00000008682	UPF3A	82	47.273	ENSPKIG00000019226	upf3b	74	73.043	Paramormyrops_kingsleyae
ENSCHIG00000008682	UPF3A	75	57.068	ENSPKIG00000004422	upf3a	90	53.641	Paramormyrops_kingsleyae
ENSCHIG00000008682	UPF3A	80	67.237	ENSPSIG00000007468	UPF3A	99	67.237	Pelodiscus_sinensis
ENSCHIG00000008682	UPF3A	77	44.235	ENSPEMG00000012352	Upf3b	84	49.639	Peromyscus_maniculatus_bairdii
ENSCHIG00000008682	UPF3A	86	66.359	ENSPEMG00000019968	-	99	65.820	Peromyscus_maniculatus_bairdii
ENSCHIG00000008682	UPF3A	81	45.972	ENSPCIG00000028914	UPF3B	86	45.238	Phascolarctos_cinereus
ENSCHIG00000008682	UPF3A	72	80.176	ENSPCIG00000019590	-	87	85.294	Phascolarctos_cinereus
ENSCHIG00000008682	UPF3A	85	54.734	ENSPFOG00000013222	upf3a	83	57.576	Poecilia_formosa
ENSCHIG00000008682	UPF3A	78	56.423	ENSPLAG00000011960	upf3a	84	56.566	Poecilia_latipinna
ENSCHIG00000008682	UPF3A	85	52.655	ENSPMEG00000000836	upf3a	83	55.181	Poecilia_mexicana
ENSCHIG00000008682	UPF3A	90	73.407	ENSPPYG00000005536	UPF3A	92	73.121	Pongo_abelii
ENSCHIG00000008682	UPF3A	81	43.527	ENSPCAG00000009464	UPF3B	84	48.821	Procavia_capensis
ENSCHIG00000008682	UPF3A	66	64.602	ENSPCAG00000013124	UPF3A	68	65.325	Procavia_capensis
ENSCHIG00000008682	UPF3A	77	45.074	ENSPCOG00000021960	UPF3B	84	49.635	Propithecus_coquereli
ENSCHIG00000008682	UPF3A	94	68.973	ENSPVAG00000005656	UPF3A	96	68.980	Pteropus_vampyrus
ENSCHIG00000008682	UPF3A	85	52.667	ENSPNYG00000011289	upf3a	83	54.348	Pundamilia_nyererei
ENSCHIG00000008682	UPF3A	89	49.482	ENSPNAG00000019532	upf3a	84	56.061	Pygocentrus_nattereri
ENSCHIG00000008682	UPF3A	82	45.089	ENSPNAG00000021528	upf3b	94	42.350	Pygocentrus_nattereri
ENSCHIG00000008682	UPF3A	81	67.647	ENSRNOG00000017397	Upf3a	98	67.237	Rattus_norvegicus
ENSCHIG00000008682	UPF3A	83	71.905	ENSRBIG00000034007	UPF3A	93	71.905	Rhinopithecus_bieti
ENSCHIG00000008682	UPF3A	80	72.549	ENSRROG00000012212	UPF3A	85	72.549	Rhinopithecus_roxellana
ENSCHIG00000008682	UPF3A	94	66.247	ENSSBOG00000029989	UPF3A	96	65.944	Saimiri_boliviensis_boliviensis
ENSCHIG00000008682	UPF3A	82	69.157	ENSSHAG00000009895	UPF3A	98	68.990	Sarcophilus_harrisii
ENSCHIG00000008682	UPF3A	80	45.261	ENSSHAG00000008634	UPF3B	86	46.226	Sarcophilus_harrisii
ENSCHIG00000008682	UPF3A	50	55.294	ENSSFOG00015005614	upf3b	89	49.272	Scleropages_formosus
ENSCHIG00000008682	UPF3A	77	45.694	ENSSMAG00000012913	upf3b	86	43.341	Scophthalmus_maximus
ENSCHIG00000008682	UPF3A	85	52.679	ENSSDUG00000009680	upf3a	85	67.114	Seriola_dumerili
ENSCHIG00000008682	UPF3A	85	54.630	ENSSLDG00000009700	upf3a	88	54.398	Seriola_lalandi_dorsalis
ENSCHIG00000008682	UPF3A	76	62.176	ENSSARG00000007262	UPF3A	93	62.176	Sorex_araneus
ENSCHIG00000008682	UPF3A	95	70.325	ENSSSCG00000024679	UPF3A	95	71.069	Sus_scrofa
ENSCHIG00000008682	UPF3A	78	68.957	ENSTGUG00000009493	UPF3A	99	68.878	Taeniopygia_guttata
ENSCHIG00000008682	UPF3A	79	54.975	ENSTRUG00000012730	upf3a	84	55.276	Takifugu_rubripes
ENSCHIG00000008682	UPF3A	79	48.889	ENSTNIG00000014973	upf3a	99	49.005	Tetraodon_nigroviridis
ENSCHIG00000008682	UPF3A	65	57.143	ENSTBEG00000017186	-	100	57.143	Tupaia_belangeri
ENSCHIG00000008682	UPF3A	94	68.697	ENSTTRG00000015414	UPF3A	96	69.130	Tursiops_truncatus
ENSCHIG00000008682	UPF3A	76	41.192	ENSUMAG00000002150	UPF3B	83	44.081	Ursus_maritimus
ENSCHIG00000008682	UPF3A	80	73.710	ENSVPAG00000003525	UPF3A	99	73.710	Vicugna_pacos
ENSCHIG00000008682	UPF3A	94	69.772	ENSVVUG00000013538	UPF3A	94	69.742	Vulpes_vulpes
ENSCHIG00000008682	UPF3A	77	44.140	ENSXETG00000007440	upf3b	71	70.732	Xenopus_tropicalis
ENSCHIG00000008682	UPF3A	77	56.522	ENSXETG00000002572	upf3a	91	56.522	Xenopus_tropicalis
ENSCHIG00000008682	UPF3A	62	63.131	ENSXCOG00000018591	upf3a	63	72.050	Xiphophorus_couchianus
ENSCHIG00000008682	UPF3A	85	54.503	ENSXMAG00000013452	upf3a	83	57.323	Xiphophorus_maculatus