EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000009837 (Gene tree)
Gene ID: 102173271
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 68139 bases
Position: chrLWLT01000027.1:23906693-23974831
Accession: 102173271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000005874	ResIII	PF04851.15	8.8e-12	1	1
ENSCHIP00000005926	ResIII	PF04851.15	9e-12	1	1
ENSCHIP00000005821	ResIII	PF04851.15	1e-11	1	1
ENSCHIP00000005849	ResIII	PF04851.15	1e-11	1	1
ENSCHIP00000005900	ResIII	PF04851.15	1.6e-08	1	1
ENSCHIP00000005926	DEAD	PF00270.29	1.8e-06	1	1
ENSCHIP00000005874	DEAD	PF00270.29	1.8e-06	1	1
ENSCHIP00000005849	DEAD	PF00270.29	1.9e-06	1	1
ENSCHIP00000005821	DEAD	PF00270.29	2e-06	1	1
ENSCHIP00000005900	DEAD	PF00270.29	5.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000013574	SMARCA1-203	3914	XM_018044178	ENSCHIP00000005874	1061 (aa)	XP_017899667	UPI0005FAAF15
ENSCHIT00000013548	SMARCA1-202	3752	-	ENSCHIP00000005849	1074 (aa)	-	UPI000D197D12
ENSCHIT00000013628	SMARCA1-205	3174	XM_018044180	ENSCHIP00000005926	1057 (aa)	XP_017899669	UPI0005FB7E54
ENSCHIT00000013521	SMARCA1-201	3872	-	ENSCHIP00000005821	1114 (aa)	-	UPI000D19032C
ENSCHIT00000013601	SMARCA1-204	3135	-	ENSCHIP00000005900	1017 (aa)	-	UPI000D18CDBB

Gene Model

Click here to download ENSCHIG00000009837's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000009837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000009837	SMARCA1	58	40.640	ENSCHIG00000013871	CHD1L	62	43.058
ENSCHIG00000009837	SMARCA1	50	32.253	ENSCHIG00000008230	-	60	33.095
ENSCHIG00000009837	SMARCA1	97	81.445	ENSCHIG00000016375	-	95	84.098
ENSCHIG00000009837	SMARCA1	97	83.008	ENSCHIG00000013730	-	93	85.729

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000009837	SMARCA1	100	97.549	ENSG00000102038	SMARCA1	100	97.549	Homo_sapiens
ENSCHIG00000009837	SMARCA1	92	83.402	ENSAPOG00000016035	smarca5	98	83.917	Acanthochromis_polyacanthus
ENSCHIG00000009837	SMARCA1	100	96.459	ENSAMEG00000015218	SMARCA1	100	96.459	Ailuropoda_melanoleuca
ENSCHIG00000009837	SMARCA1	85	83.942	ENSACIG00000016982	smarca5	99	84.040	Amphilophus_citrinellus
ENSCHIG00000009837	SMARCA1	92	83.402	ENSAOCG00000015578	smarca5	95	82.675	Amphiprion_ocellaris
ENSCHIG00000009837	SMARCA1	92	83.402	ENSAPEG00000011117	smarca5	99	83.962	Amphiprion_percula
ENSCHIG00000009837	SMARCA1	95	80.578	ENSATEG00000012894	smarca5	95	82.675	Anabas_testudineus
ENSCHIG00000009837	SMARCA1	93	92.668	ENSAPLG00000013149	SMARCA1	100	92.668	Anas_platyrhynchos
ENSCHIG00000009837	SMARCA1	97	89.351	ENSACAG00000011376	SMARCA1	95	91.291	Anolis_carolinensis
ENSCHIG00000009837	SMARCA1	98	92.315	ENSANAG00000023098	SMARCA1	100	91.800	Aotus_nancymaae
ENSCHIG00000009837	SMARCA1	97	80.428	ENSACLG00000025356	smarca5	95	83.080	Astatotilapia_calliptera
ENSCHIG00000009837	SMARCA1	98	80.135	ENSAMXG00000005709	smarca5	94	83.692	Astyanax_mexicanus
ENSCHIG00000009837	SMARCA1	88	87.527	ENSAMXG00000011227	smarca1	99	89.818	Astyanax_mexicanus
ENSCHIG00000009837	SMARCA1	99	99.810	ENSBTAG00000002292	SMARCA1	100	99.810	Bos_taurus
ENSCHIG00000009837	SMARCA1	92	63.030	WBGene00002169	isw-1	97	63.030	Caenorhabditis_elegans
ENSCHIG00000009837	SMARCA1	100	97.267	ENSCJAG00000002868	SMARCA1	100	97.267	Callithrix_jacchus
ENSCHIG00000009837	SMARCA1	100	87.570	ENSCAFG00000018673	SMARCA1	99	88.588	Canis_familiaris
ENSCHIG00000009837	SMARCA1	100	98.115	ENSCAFG00020001751	SMARCA1	100	98.139	Canis_lupus_dingo
ENSCHIG00000009837	SMARCA1	94	97.900	ENSTSYG00000004240	SMARCA1	98	97.251	Carlito_syrichta
ENSCHIG00000009837	SMARCA1	96	96.663	ENSCPOG00000013601	SMARCA1	100	94.986	Cavia_porcellus
ENSCHIG00000009837	SMARCA1	98	94.236	ENSCCAG00000030817	SMARCA1	100	93.685	Cebus_capucinus
ENSCHIG00000009837	SMARCA1	100	96.459	ENSCATG00000015921	SMARCA1	99	97.495	Cercocebus_atys
ENSCHIG00000009837	SMARCA1	100	96.230	ENSCLAG00000002171	SMARCA1	100	96.230	Chinchilla_lanigera
ENSCHIG00000009837	SMARCA1	100	97.455	ENSCSAG00000008460	SMARCA1	100	97.455	Chlorocebus_sabaeus
ENSCHIG00000009837	SMARCA1	94	92.507	ENSCPBG00000001146	SMARCA1	94	92.593	Chrysemys_picta_bellii
ENSCHIG00000009837	SMARCA1	92	72.984	ENSCING00000004110	swi/snf	98	72.984	Ciona_intestinalis
ENSCHIG00000009837	SMARCA1	92	73.089	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSCHIG00000009837	SMARCA1	100	97.455	ENSCANG00000007183	SMARCA1	100	97.455	Colobus_angolensis_palliatus
ENSCHIG00000009837	SMARCA1	100	94.345	ENSCGRG00001010776	Smarca1	100	94.062	Cricetulus_griseus_chok1gshd
ENSCHIG00000009837	SMARCA1	95	95.609	ENSCGRG00000015301	Smarca1	98	96.080	Cricetulus_griseus_crigri
ENSCHIG00000009837	SMARCA1	92	83.402	ENSCSEG00000000328	smarca5	95	82.626	Cynoglossus_semilaevis
ENSCHIG00000009837	SMARCA1	92	82.994	ENSCVAG00000008668	smarca5	99	83.510	Cyprinodon_variegatus
ENSCHIG00000009837	SMARCA1	97	79.806	ENSDARG00000052348	smarca5	94	83.282	Danio_rerio
ENSCHIG00000009837	SMARCA1	93	85.192	ENSDARG00000012776	smarca1	98	85.192	Danio_rerio
ENSCHIG00000009837	SMARCA1	98	95.279	ENSDNOG00000004315	SMARCA1	99	94.798	Dasypus_novemcinctus
ENSCHIG00000009837	SMARCA1	100	94.324	ENSDORG00000009270	Smarca1	99	94.894	Dipodomys_ordii
ENSCHIG00000009837	SMARCA1	91	73.237	FBgn0011604	Iswi	98	72.332	Drosophila_melanogaster
ENSCHIG00000009837	SMARCA1	80	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSCHIG00000009837	SMARCA1	92	81.001	ENSEBUG00000001239	smarca5	96	81.001	Eptatretus_burgeri
ENSCHIG00000009837	SMARCA1	95	94.732	ENSEASG00005008218	SMARCA1	99	94.732	Equus_asinus_asinus
ENSCHIG00000009837	SMARCA1	100	98.398	ENSECAG00000012106	SMARCA1	100	98.398	Equus_caballus
ENSCHIG00000009837	SMARCA1	77	98.013	ENSEEUG00000014927	SMARCA1	84	98.013	Erinaceus_europaeus
ENSCHIG00000009837	SMARCA1	94	86.241	ENSELUG00000010515	smarca1	98	86.583	Esox_lucius
ENSCHIG00000009837	SMARCA1	100	98.021	ENSFCAG00000018496	SMARCA1	100	98.021	Felis_catus
ENSCHIG00000009837	SMARCA1	88	91.459	ENSFALG00000000209	SMARCA1	98	92.763	Ficedula_albicollis
ENSCHIG00000009837	SMARCA1	94	97.896	ENSFDAG00000009818	SMARCA1	98	97.896	Fukomys_damarensis
ENSCHIG00000009837	SMARCA1	98	79.749	ENSFHEG00000007687	smarca5	94	82.877	Fundulus_heteroclitus
ENSCHIG00000009837	SMARCA1	93	90.927	ENSGALG00000008431	SMARCA1	96	92.505	Gallus_gallus
ENSCHIG00000009837	SMARCA1	92	83.198	ENSGAFG00000017731	smarca5	95	82.877	Gambusia_affinis
ENSCHIG00000009837	SMARCA1	92	93.107	ENSGAGG00000023575	SMARCA1	100	93.107	Gopherus_agassizii
ENSCHIG00000009837	SMARCA1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCHIG00000009837	SMARCA1	100	96.026	ENSHGLG00000003080	SMARCA1	100	96.026	Heterocephalus_glaber_female
ENSCHIG00000009837	SMARCA1	94	96.304	ENSHGLG00100001102	SMARCA1	100	96.304	Heterocephalus_glaber_male
ENSCHIG00000009837	SMARCA1	92	83.231	ENSHCOG00000005458	smarca5	95	82.776	Hippocampus_comes
ENSCHIG00000009837	SMARCA1	96	80.648	ENSIPUG00000005229	SMARCA5	97	82.353	Ictalurus_punctatus
ENSCHIG00000009837	SMARCA1	95	85.248	ENSIPUG00000016905	Smarca1	99	86.925	Ictalurus_punctatus
ENSCHIG00000009837	SMARCA1	100	97.172	ENSSTOG00000014524	SMARCA1	100	97.172	Ictidomys_tridecemlineatus
ENSCHIG00000009837	SMARCA1	100	94.747	ENSJJAG00000002593	Smarca1	100	94.559	Jaculus_jaculus
ENSCHIG00000009837	SMARCA1	92	83.742	ENSKMAG00000003777	smarca5	95	83.283	Kryptolebias_marmoratus
ENSCHIG00000009837	SMARCA1	93	82.323	ENSLBEG00000018112	smarca5	95	82.323	Labrus_bergylta
ENSCHIG00000009837	SMARCA1	88	83.566	ENSLBEG00000013295	SMARCA1	100	84.703	Labrus_bergylta
ENSCHIG00000009837	SMARCA1	96	88.955	ENSLACG00000016697	SMARCA1	98	89.890	Latimeria_chalumnae
ENSCHIG00000009837	SMARCA1	94	88.566	ENSLOCG00000014591	smarca1	97	88.566	Lepisosteus_oculatus
ENSCHIG00000009837	SMARCA1	94	96.223	ENSLAFG00000000896	SMARCA1	100	96.223	Loxodonta_africana
ENSCHIG00000009837	SMARCA1	100	97.549	ENSMFAG00000002117	SMARCA1	99	97.495	Macaca_fascicularis
ENSCHIG00000009837	SMARCA1	100	96.459	ENSMMUG00000008818	SMARCA1	99	98.220	Macaca_mulatta
ENSCHIG00000009837	SMARCA1	100	96.459	ENSMNEG00000041768	SMARCA1	99	97.495	Macaca_nemestrina
ENSCHIG00000009837	SMARCA1	100	97.455	ENSMLEG00000043198	SMARCA1	100	97.455	Mandrillus_leucophaeus
ENSCHIG00000009837	SMARCA1	92	83.401	ENSMAMG00000014294	smarca5	95	83.080	Mastacembelus_armatus
ENSCHIG00000009837	SMARCA1	97	80.428	ENSMZEG00005009369	smarca5	95	83.080	Maylandia_zebra
ENSCHIG00000009837	SMARCA1	95	90.739	ENSMGAG00000007042	SMARCA1	99	90.900	Meleagris_gallopavo
ENSCHIG00000009837	SMARCA1	100	95.459	ENSMAUG00000008133	Smarca1	100	95.175	Mesocricetus_auratus
ENSCHIG00000009837	SMARCA1	100	97.078	ENSMICG00000015768	SMARCA1	100	97.078	Microcebus_murinus
ENSCHIG00000009837	SMARCA1	100	95.459	ENSMOCG00000009464	Smarca1	100	94.797	Microtus_ochrogaster
ENSCHIG00000009837	SMARCA1	93	81.054	ENSMMOG00000005547	smarca5	99	81.054	Mola_mola
ENSCHIG00000009837	SMARCA1	98	88.996	ENSMODG00000013187	-	99	88.803	Monodelphis_domestica
ENSCHIG00000009837	SMARCA1	92	83.027	ENSMALG00000002081	smarca5	97	82.766	Monopterus_albus
ENSCHIG00000009837	SMARCA1	100	94.934	MGP_CAROLIEiJ_G0033034	Smarca1	100	94.841	Mus_caroli
ENSCHIG00000009837	SMARCA1	100	94.934	ENSMUSG00000031099	Smarca1	100	94.841	Mus_musculus
ENSCHIG00000009837	SMARCA1	100	94.934	MGP_PahariEiJ_G0031579	Smarca1	100	94.841	Mus_pahari
ENSCHIG00000009837	SMARCA1	100	95.028	MGP_SPRETEiJ_G0034192	Smarca1	100	94.934	Mus_spretus
ENSCHIG00000009837	SMARCA1	99	97.810	ENSMPUG00000017423	SMARCA1	98	95.848	Mustela_putorius_furo
ENSCHIG00000009837	SMARCA1	98	94.288	ENSMLUG00000029614	SMARCA1	100	93.488	Myotis_lucifugus
ENSCHIG00000009837	SMARCA1	100	96.310	ENSNGAG00000006492	Smarca1	100	96.310	Nannospalax_galili
ENSCHIG00000009837	SMARCA1	92	83.503	ENSNBRG00000004463	smarca5	99	83.181	Neolamprologus_brichardi
ENSCHIG00000009837	SMARCA1	100	95.806	ENSNLEG00000015179	SMARCA1	100	95.806	Nomascus_leucogenys
ENSCHIG00000009837	SMARCA1	90	81.723	ENSMEUG00000008819	SMARCA1	99	81.703	Notamacropus_eugenii
ENSCHIG00000009837	SMARCA1	98	96.046	ENSODEG00000012163	SMARCA1	100	95.270	Octodon_degus
ENSCHIG00000009837	SMARCA1	97	80.526	ENSONIG00000009993	smarca5	95	83.181	Oreochromis_niloticus
ENSCHIG00000009837	SMARCA1	92	93.210	ENSOANG00000002862	SMARCA1	100	93.210	Ornithorhynchus_anatinus
ENSCHIG00000009837	SMARCA1	100	94.816	ENSOCUG00000001047	SMARCA1	100	94.628	Oryctolagus_cuniculus
ENSCHIG00000009837	SMARCA1	92	83.333	ENSORLG00000021998	smarca5	95	82.877	Oryzias_latipes
ENSCHIG00000009837	SMARCA1	92	83.436	ENSORLG00020017679	smarca5	96	82.182	Oryzias_latipes_hni
ENSCHIG00000009837	SMARCA1	92	83.333	ENSORLG00015017210	smarca5	95	82.776	Oryzias_latipes_hsok
ENSCHIG00000009837	SMARCA1	92	83.333	ENSOMEG00000000086	smarca5	95	82.776	Oryzias_melastigma
ENSCHIG00000009837	SMARCA1	100	97.256	ENSOGAG00000004399	SMARCA1	100	97.256	Otolemur_garnettii
ENSCHIG00000009837	SMARCA1	94	98.717	ENSOARG00000014638	SMARCA1	100	100.000	Ovis_aries
ENSCHIG00000009837	SMARCA1	100	97.549	ENSPPAG00000034647	SMARCA1	100	97.549	Pan_paniscus
ENSCHIG00000009837	SMARCA1	100	98.209	ENSPPRG00000008929	SMARCA1	100	98.209	Panthera_pardus
ENSCHIG00000009837	SMARCA1	94	97.085	ENSPTIG00000000915	SMARCA1	98	96.952	Panthera_tigris_altaica
ENSCHIG00000009837	SMARCA1	100	97.549	ENSPTRG00000049876	SMARCA1	99	97.495	Pan_troglodytes
ENSCHIG00000009837	SMARCA1	100	97.549	ENSPANG00000003871	SMARCA1	100	97.549	Papio_anubis
ENSCHIG00000009837	SMARCA1	93	85.525	ENSPKIG00000013411	smarca1	98	86.826	Paramormyrops_kingsleyae
ENSCHIG00000009837	SMARCA1	94	91.810	ENSPSIG00000010101	SMARCA1	100	92.798	Pelodiscus_sinensis
ENSCHIG00000009837	SMARCA1	100	96.405	ENSPEMG00000017503	Smarca1	100	96.405	Peromyscus_maniculatus_bairdii
ENSCHIG00000009837	SMARCA1	94	91.808	ENSPCIG00000015460	SMARCA1	98	91.892	Phascolarctos_cinereus
ENSCHIG00000009837	SMARCA1	92	83.436	ENSPFOG00000007649	smarca5	95	82.877	Poecilia_formosa
ENSCHIG00000009837	SMARCA1	92	83.436	ENSPLAG00000003363	smarca5	95	82.877	Poecilia_latipinna
ENSCHIG00000009837	SMARCA1	92	83.333	ENSPMEG00000019849	smarca5	95	82.776	Poecilia_mexicana
ENSCHIG00000009837	SMARCA1	92	83.333	ENSPREG00000023250	smarca5	95	82.776	Poecilia_reticulata
ENSCHIG00000009837	SMARCA1	100	93.573	ENSPPYG00000020703	SMARCA1	100	94.251	Pongo_abelii
ENSCHIG00000009837	SMARCA1	78	90.909	ENSPCOG00000020722	SMARCA1	94	92.658	Propithecus_coquereli
ENSCHIG00000009837	SMARCA1	94	97.449	ENSPVAG00000003805	SMARCA1	94	97.449	Pteropus_vampyrus
ENSCHIG00000009837	SMARCA1	56	84.110	ENSPNYG00000012299	smarca5	91	83.243	Pundamilia_nyererei
ENSCHIG00000009837	SMARCA1	100	95.570	ENSRNOG00000003762	Smarca1	100	95.476	Rattus_norvegicus
ENSCHIG00000009837	SMARCA1	100	97.542	ENSRROG00000034167	SMARCA1	100	97.542	Rhinopithecus_roxellana
ENSCHIG00000009837	SMARCA1	96	96.035	ENSSBOG00000020641	SMARCA1	100	98.673	Saimiri_boliviensis_boliviensis
ENSCHIG00000009837	SMARCA1	92	86.434	ENSSHAG00000013518	SMARCA1	99	86.434	Sarcophilus_harrisii
ENSCHIG00000009837	SMARCA1	98	85.067	ENSSFOG00015009043	smarca1	98	87.487	Scleropages_formosus
ENSCHIG00000009837	SMARCA1	93	82.359	ENSSFOG00015016794	smarca5	100	83.402	Scleropages_formosus
ENSCHIG00000009837	SMARCA1	93	82.168	ENSSMAG00000004801	smarca5	95	82.168	Scophthalmus_maximus
ENSCHIG00000009837	SMARCA1	92	82.892	ENSSDUG00000020690	smarca5	95	82.573	Seriola_dumerili
ENSCHIG00000009837	SMARCA1	92	82.892	ENSSLDG00000025190	smarca5	95	82.573	Seriola_lalandi_dorsalis
ENSCHIG00000009837	SMARCA1	87	90.580	ENSSARG00000000842	SMARCA1	92	90.580	Sorex_araneus
ENSCHIG00000009837	SMARCA1	97	88.533	ENSSPUG00000000590	SMARCA1	94	91.897	Sphenodon_punctatus
ENSCHIG00000009837	SMARCA1	92	82.994	ENSSPAG00000002894	smarca5	97	83.917	Stegastes_partitus
ENSCHIG00000009837	SMARCA1	98	98.362	ENSSSCG00000012649	SMARCA1	99	98.397	Sus_scrofa
ENSCHIG00000009837	SMARCA1	93	92.159	ENSTGUG00000003899	-	100	92.159	Taeniopygia_guttata
ENSCHIG00000009837	SMARCA1	92	83.096	ENSTRUG00000014094	smarca5	95	82.776	Takifugu_rubripes
ENSCHIG00000009837	SMARCA1	92	82.480	ENSTNIG00000017717	smarca5	94	81.864	Tetraodon_nigroviridis
ENSCHIG00000009837	SMARCA1	94	91.165	ENSTBEG00000014973	SMARCA1	100	91.165	Tupaia_belangeri
ENSCHIG00000009837	SMARCA1	94	95.960	ENSTTRG00000006168	SMARCA1	100	95.960	Tursiops_truncatus
ENSCHIG00000009837	SMARCA1	100	97.644	ENSUAMG00000020201	SMARCA1	100	97.649	Ursus_americanus
ENSCHIG00000009837	SMARCA1	93	94.422	ENSUMAG00000004073	SMARCA1	97	98.783	Ursus_maritimus
ENSCHIG00000009837	SMARCA1	79	99.683	ENSVPAG00000010492	-	86	99.683	Vicugna_pacos
ENSCHIG00000009837	SMARCA1	94	99.000	ENSVVUG00000008878	SMARCA1	99	99.164	Vulpes_vulpes
ENSCHIG00000009837	SMARCA1	94	89.357	ENSXETG00000001526	smarca1	99	89.357	Xenopus_tropicalis
ENSCHIG00000009837	SMARCA1	92	83.096	ENSXCOG00000011170	smarca5	98	82.776	Xiphophorus_couchianus
ENSCHIG00000009837	SMARCA1	92	83.096	ENSXMAG00000009678	smarca5	97	84.649	Xiphophorus_maculatus