EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000009975 (Gene tree)
Gene ID: 102184504
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 10347 bases
Position: chr29:28891746-28902092
Accession: 102184504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000006024	PseudoU_synth_2	PF00849.22	1.4e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000013728	RPUSD4-201	1524	XM_013975826	ENSCHIP00000006024	378 (aa)	XP_013831280	UPI000846A5DB

Gene Model

Click here to download ENSCHIG00000009975's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000009975's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000009975	RPUSD4	71	32.192	ENSCHIG00000026027	RPUSD3	82	32.056

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000009975	RPUSD4	100	77.573	ENSG00000165526	RPUSD4	100	77.836	Homo_sapiens
ENSCHIG00000009975	RPUSD4	88	51.039	ENSAPOG00000011024	rpusd4	82	51.988	Acanthochromis_polyacanthus
ENSCHIG00000009975	RPUSD4	100	81.003	ENSAMEG00000000127	-	100	81.266	Ailuropoda_melanoleuca
ENSCHIG00000009975	RPUSD4	67	74.775	ENSAMEG00000005953	-	100	74.775	Ailuropoda_melanoleuca
ENSCHIG00000009975	RPUSD4	90	48.127	ENSACIG00000003533	rpusd4	99	48.127	Amphilophus_citrinellus
ENSCHIG00000009975	RPUSD4	87	51.488	ENSAOCG00000015409	rpusd4	81	52.294	Amphiprion_ocellaris
ENSCHIG00000009975	RPUSD4	87	51.488	ENSAPEG00000018935	rpusd4	81	52.294	Amphiprion_percula
ENSCHIG00000009975	RPUSD4	87	50.729	ENSATEG00000008059	rpusd4	81	52.294	Anabas_testudineus
ENSCHIG00000009975	RPUSD4	73	59.498	ENSAPLG00000013250	RPUSD4	99	58.644	Anas_platyrhynchos
ENSCHIG00000009975	RPUSD4	97	57.182	ENSACAG00000000189	RPUSD4	99	57.182	Anolis_carolinensis
ENSCHIG00000009975	RPUSD4	98	78.552	ENSANAG00000024050	RPUSD4	99	78.552	Aotus_nancymaae
ENSCHIG00000009975	RPUSD4	84	51.235	ENSACLG00000020996	rpusd4	83	51.235	Astatotilapia_calliptera
ENSCHIG00000009975	RPUSD4	93	48.138	ENSAMXG00000031479	rpusd4	94	51.952	Astyanax_mexicanus
ENSCHIG00000009975	RPUSD4	100	95.767	ENSBTAG00000020900	RPUSD4	100	95.767	Bos_taurus
ENSCHIG00000009975	RPUSD4	99	78.667	ENSCJAG00000042850	RPUSD4	94	78.667	Callithrix_jacchus
ENSCHIG00000009975	RPUSD4	100	78.947	ENSCAFG00000010488	RPUSD4	100	78.947	Canis_familiaris
ENSCHIG00000009975	RPUSD4	100	78.947	ENSCAFG00020010621	RPUSD4	100	78.947	Canis_lupus_dingo
ENSCHIG00000009975	RPUSD4	100	80.159	ENSTSYG00000008456	RPUSD4	100	80.159	Carlito_syrichta
ENSCHIG00000009975	RPUSD4	67	75.794	ENSCAPG00000006040	RPUSD4	98	75.794	Cavia_aperea
ENSCHIG00000009975	RPUSD4	98	79.032	ENSCPOG00000014971	RPUSD4	98	79.032	Cavia_porcellus
ENSCHIG00000009975	RPUSD4	98	79.357	ENSCCAG00000027838	RPUSD4	99	79.357	Cebus_capucinus
ENSCHIG00000009975	RPUSD4	100	77.836	ENSCATG00000041570	RPUSD4	100	77.836	Cercocebus_atys
ENSCHIG00000009975	RPUSD4	98	80.429	ENSCLAG00000016553	RPUSD4	98	80.429	Chinchilla_lanigera
ENSCHIG00000009975	RPUSD4	100	77.309	ENSCSAG00000002274	RPUSD4	100	77.309	Chlorocebus_sabaeus
ENSCHIG00000009975	RPUSD4	75	79.505	ENSCHOG00000010249	RPUSD4	100	79.505	Choloepus_hoffmanni
ENSCHIG00000009975	RPUSD4	75	65.385	ENSCPBG00000011175	RPUSD4	99	65.385	Chrysemys_picta_bellii
ENSCHIG00000009975	RPUSD4	71	42.086	ENSCSAVG00000000872	-	54	42.086	Ciona_savignyi
ENSCHIG00000009975	RPUSD4	100	77.045	ENSCANG00000039684	RPUSD4	100	77.045	Colobus_angolensis_palliatus
ENSCHIG00000009975	RPUSD4	100	76.781	ENSCGRG00001024141	Rpusd4	100	76.781	Cricetulus_griseus_chok1gshd
ENSCHIG00000009975	RPUSD4	100	76.781	ENSCGRG00000014415	Rpusd4	100	76.781	Cricetulus_griseus_crigri
ENSCHIG00000009975	RPUSD4	86	49.699	ENSCVAG00000008761	rpusd4	83	50.000	Cyprinodon_variegatus
ENSCHIG00000009975	RPUSD4	88	49.275	ENSCVAG00000000392	rpusd4	92	50.307	Cyprinodon_variegatus
ENSCHIG00000009975	RPUSD4	85	49.538	ENSDARG00000012674	rpusd4	91	49.846	Danio_rerio
ENSCHIG00000009975	RPUSD4	100	75.198	ENSDNOG00000020026	RPUSD4	100	75.198	Dasypus_novemcinctus
ENSCHIG00000009975	RPUSD4	100	78.100	ENSDORG00000016717	Rpusd4	100	78.364	Dipodomys_ordii
ENSCHIG00000009975	RPUSD4	99	76.944	ENSETEG00000013953	RPUSD4	98	76.944	Echinops_telfairi
ENSCHIG00000009975	RPUSD4	100	83.377	ENSEASG00005022982	RPUSD4	100	83.377	Equus_asinus_asinus
ENSCHIG00000009975	RPUSD4	100	83.113	ENSECAG00000000557	RPUSD4	100	83.113	Equus_caballus
ENSCHIG00000009975	RPUSD4	82	77.895	ENSEEUG00000014036	RPUSD4	82	77.895	Erinaceus_europaeus
ENSCHIG00000009975	RPUSD4	88	52.890	ENSELUG00000008075	rpusd4	87	53.731	Esox_lucius
ENSCHIG00000009975	RPUSD4	100	79.420	ENSFCAG00000029789	RPUSD4	100	79.683	Felis_catus
ENSCHIG00000009975	RPUSD4	88	57.612	ENSFALG00000005171	RPUSD4	95	58.824	Ficedula_albicollis
ENSCHIG00000009975	RPUSD4	100	78.100	ENSFDAG00000014307	RPUSD4	100	78.100	Fukomys_damarensis
ENSCHIG00000009975	RPUSD4	88	50.888	ENSFHEG00000004329	rpusd4	84	51.682	Fundulus_heteroclitus
ENSCHIG00000009975	RPUSD4	85	50.462	ENSGMOG00000017726	rpusd4	96	50.462	Gadus_morhua
ENSCHIG00000009975	RPUSD4	73	62.724	ENSGALG00000024326	RPUSD4	92	58.788	Gallus_gallus
ENSCHIG00000009975	RPUSD4	89	46.957	ENSGAFG00000021559	rpusd4	81	48.113	Gambusia_affinis
ENSCHIG00000009975	RPUSD4	87	48.512	ENSGACG00000001657	rpusd4	99	49.655	Gasterosteus_aculeatus
ENSCHIG00000009975	RPUSD4	96	59.178	ENSGAGG00000000132	RPUSD4	89	63.043	Gopherus_agassizii
ENSCHIG00000009975	RPUSD4	100	77.573	ENSGGOG00000016494	RPUSD4	100	77.836	Gorilla_gorilla
ENSCHIG00000009975	RPUSD4	84	51.235	ENSHBUG00000022838	rpusd4	83	51.235	Haplochromis_burtoni
ENSCHIG00000009975	RPUSD4	100	78.364	ENSHGLG00000002285	RPUSD4	100	78.364	Heterocephalus_glaber_female
ENSCHIG00000009975	RPUSD4	100	78.364	ENSHGLG00100006385	RPUSD4	100	78.364	Heterocephalus_glaber_male
ENSCHIG00000009975	RPUSD4	86	50.904	ENSHCOG00000006612	rpusd4	84	50.904	Hippocampus_comes
ENSCHIG00000009975	RPUSD4	93	50.565	ENSIPUG00000023879	rusd4	85	53.049	Ictalurus_punctatus
ENSCHIG00000009975	RPUSD4	97	80.822	ENSSTOG00000025280	RPUSD4	100	80.822	Ictidomys_tridecemlineatus
ENSCHIG00000009975	RPUSD4	98	79.357	ENSJJAG00000018673	Rpusd4	99	79.357	Jaculus_jaculus
ENSCHIG00000009975	RPUSD4	94	50.411	ENSKMAG00000021805	rpusd4	85	51.807	Kryptolebias_marmoratus
ENSCHIG00000009975	RPUSD4	82	52.484	ENSLBEG00000020394	rpusd4	90	52.484	Labrus_bergylta
ENSCHIG00000009975	RPUSD4	85	61.610	ENSLACG00000011028	RPUSD4	82	61.610	Latimeria_chalumnae
ENSCHIG00000009975	RPUSD4	85	49.693	ENSLOCG00000003124	rpusd4	86	49.080	Lepisosteus_oculatus
ENSCHIG00000009975	RPUSD4	100	78.042	ENSLAFG00000005211	RPUSD4	100	78.042	Loxodonta_africana
ENSCHIG00000009975	RPUSD4	100	77.836	ENSMFAG00000039513	RPUSD4	100	77.836	Macaca_fascicularis
ENSCHIG00000009975	RPUSD4	100	77.573	ENSMMUG00000007933	RPUSD4	100	77.573	Macaca_mulatta
ENSCHIG00000009975	RPUSD4	100	77.836	ENSMNEG00000027414	RPUSD4	100	77.836	Macaca_nemestrina
ENSCHIG00000009975	RPUSD4	100	77.309	ENSMLEG00000042461	RPUSD4	100	77.309	Mandrillus_leucophaeus
ENSCHIG00000009975	RPUSD4	85	48.936	ENSMAMG00000023839	rpusd4	85	48.936	Mastacembelus_armatus
ENSCHIG00000009975	RPUSD4	84	51.235	ENSMZEG00005011999	rpusd4	83	51.235	Maylandia_zebra
ENSCHIG00000009975	RPUSD4	73	61.372	ENSMGAG00000000840	RPUSD4	99	58.255	Meleagris_gallopavo
ENSCHIG00000009975	RPUSD4	100	75.989	ENSMAUG00000010280	Rpusd4	100	75.989	Mesocricetus_auratus
ENSCHIG00000009975	RPUSD4	100	80.211	ENSMICG00000015979	RPUSD4	100	80.211	Microcebus_murinus
ENSCHIG00000009975	RPUSD4	98	73.995	ENSMOCG00000000661	Rpusd4	98	73.995	Microtus_ochrogaster
ENSCHIG00000009975	RPUSD4	78	55.000	ENSMMOG00000021731	rpusd4	88	54.515	Mola_mola
ENSCHIG00000009975	RPUSD4	92	70.487	ENSMODG00000004521	RPUSD4	89	70.487	Monodelphis_domestica
ENSCHIG00000009975	RPUSD4	79	51.316	ENSMALG00000005839	rpusd4	97	49.689	Monopterus_albus
ENSCHIG00000009975	RPUSD4	100	74.406	MGP_CAROLIEiJ_G0031954	Rpusd4	100	74.406	Mus_caroli
ENSCHIG00000009975	RPUSD4	98	75.335	ENSMUSG00000032044	Rpusd4	98	75.335	Mus_musculus
ENSCHIG00000009975	RPUSD4	100	75.989	MGP_PahariEiJ_G0014819	Rpusd4	100	75.989	Mus_pahari
ENSCHIG00000009975	RPUSD4	98	75.335	MGP_SPRETEiJ_G0033078	Rpusd4	98	75.335	Mus_spretus
ENSCHIG00000009975	RPUSD4	99	79.045	ENSMPUG00000006608	RPUSD4	99	79.310	Mustela_putorius_furo
ENSCHIG00000009975	RPUSD4	90	82.111	ENSMLUG00000017328	-	96	80.055	Myotis_lucifugus
ENSCHIG00000009975	RPUSD4	67	80.315	ENSMLUG00000029348	-	100	80.315	Myotis_lucifugus
ENSCHIG00000009975	RPUSD4	98	77.480	ENSNGAG00000020847	Rpusd4	98	77.480	Nannospalax_galili
ENSCHIG00000009975	RPUSD4	84	52.308	ENSNBRG00000005207	rpusd4	94	52.308	Neolamprologus_brichardi
ENSCHIG00000009975	RPUSD4	100	78.100	ENSNLEG00000007465	RPUSD4	100	78.100	Nomascus_leucogenys
ENSCHIG00000009975	RPUSD4	98	65.323	ENSMEUG00000004370	RPUSD4	99	65.323	Notamacropus_eugenii
ENSCHIG00000009975	RPUSD4	70	60.150	ENSOPRG00000013141	-	100	60.150	Ochotona_princeps
ENSCHIG00000009975	RPUSD4	98	79.357	ENSODEG00000004577	RPUSD4	98	79.357	Octodon_degus
ENSCHIG00000009975	RPUSD4	88	50.737	ENSONIG00000018879	rpusd4	91	50.737	Oreochromis_niloticus
ENSCHIG00000009975	RPUSD4	77	65.424	ENSOANG00000007247	RPUSD4	95	65.320	Ornithorhynchus_anatinus
ENSCHIG00000009975	RPUSD4	99	78.307	ENSOCUG00000017039	RPUSD4	99	78.307	Oryctolagus_cuniculus
ENSCHIG00000009975	RPUSD4	88	48.368	ENSORLG00000002750	rpusd4	88	49.688	Oryzias_latipes
ENSCHIG00000009975	RPUSD4	87	48.246	ENSORLG00020002044	rpusd4	81	49.231	Oryzias_latipes_hni
ENSCHIG00000009975	RPUSD4	87	48.538	ENSORLG00015020034	rpusd4	81	49.538	Oryzias_latipes_hsok
ENSCHIG00000009975	RPUSD4	84	52.160	ENSOMEG00000004861	rpusd4	79	52.160	Oryzias_melastigma
ENSCHIG00000009975	RPUSD4	100	78.684	ENSOGAG00000008922	RPUSD4	100	78.947	Otolemur_garnettii
ENSCHIG00000009975	RPUSD4	100	98.153	ENSOARG00000012238	RPUSD4	100	98.153	Ovis_aries
ENSCHIG00000009975	RPUSD4	100	77.836	ENSPPAG00000042883	RPUSD4	93	78.100	Pan_paniscus
ENSCHIG00000009975	RPUSD4	100	79.683	ENSPPRG00000003081	RPUSD4	100	79.947	Panthera_pardus
ENSCHIG00000009975	RPUSD4	100	79.683	ENSPTIG00000012059	RPUSD4	100	79.947	Panthera_tigris_altaica
ENSCHIG00000009975	RPUSD4	100	77.573	ENSPTRG00000004454	RPUSD4	100	77.836	Pan_troglodytes
ENSCHIG00000009975	RPUSD4	100	78.364	ENSPANG00000015040	RPUSD4	100	78.364	Papio_anubis
ENSCHIG00000009975	RPUSD4	88	57.015	ENSPKIG00000023986	rpusd4	83	57.538	Paramormyrops_kingsleyae
ENSCHIG00000009975	RPUSD4	79	65.000	ENSPSIG00000014268	RPUSD4	95	65.000	Pelodiscus_sinensis
ENSCHIG00000009975	RPUSD4	88	47.674	ENSPMGG00000002806	rpusd4	91	48.788	Periophthalmus_magnuspinnatus
ENSCHIG00000009975	RPUSD4	100	68.338	ENSPEMG00000000278	Rpusd4	100	68.338	Peromyscus_maniculatus_bairdii
ENSCHIG00000009975	RPUSD4	79	45.619	ENSPMAG00000008183	rpusd4	96	45.015	Petromyzon_marinus
ENSCHIG00000009975	RPUSD4	97	68.579	ENSPCIG00000010212	RPUSD4	100	68.306	Phascolarctos_cinereus
ENSCHIG00000009975	RPUSD4	87	48.397	ENSPFOG00000019030	rpusd4	87	49.249	Poecilia_formosa
ENSCHIG00000009975	RPUSD4	87	48.974	ENSPLAG00000016848	rpusd4	84	49.849	Poecilia_latipinna
ENSCHIG00000009975	RPUSD4	83	49.371	ENSPMEG00000017534	rpusd4	81	49.371	Poecilia_mexicana
ENSCHIG00000009975	RPUSD4	79	50.645	ENSPREG00000005689	rpusd4	77	51.667	Poecilia_reticulata
ENSCHIG00000009975	RPUSD4	100	78.628	ENSPPYG00000004043	RPUSD4	100	78.892	Pongo_abelii
ENSCHIG00000009975	RPUSD4	80	76.471	ENSPCAG00000000753	RPUSD4	82	76.471	Procavia_capensis
ENSCHIG00000009975	RPUSD4	98	75.067	ENSPCOG00000020694	RPUSD4	100	75.067	Propithecus_coquereli
ENSCHIG00000009975	RPUSD4	100	78.628	ENSPVAG00000000988	RPUSD4	100	78.628	Pteropus_vampyrus
ENSCHIG00000009975	RPUSD4	84	51.385	ENSPNYG00000009652	rpusd4	83	51.385	Pundamilia_nyererei
ENSCHIG00000009975	RPUSD4	88	51.190	ENSPNAG00000012264	rpusd4	85	52.160	Pygocentrus_nattereri
ENSCHIG00000009975	RPUSD4	98	76.408	ENSRNOG00000011567	Rpusd4	98	76.408	Rattus_norvegicus
ENSCHIG00000009975	RPUSD4	100	77.573	ENSRBIG00000034842	RPUSD4	100	77.573	Rhinopithecus_bieti
ENSCHIG00000009975	RPUSD4	100	77.573	ENSRROG00000039753	RPUSD4	100	77.573	Rhinopithecus_roxellana
ENSCHIG00000009975	RPUSD4	98	77.480	ENSSBOG00000030413	RPUSD4	99	77.480	Saimiri_boliviensis_boliviensis
ENSCHIG00000009975	RPUSD4	80	71.761	ENSSHAG00000008304	RPUSD4	99	71.761	Sarcophilus_harrisii
ENSCHIG00000009975	RPUSD4	85	57.704	ENSSFOG00015006203	rpusd4	89	58.507	Scleropages_formosus
ENSCHIG00000009975	RPUSD4	87	51.343	ENSSMAG00000020978	rpusd4	85	51.553	Scophthalmus_maximus
ENSCHIG00000009975	RPUSD4	87	48.955	ENSSDUG00000013399	rpusd4	84	49.843	Seriola_dumerili
ENSCHIG00000009975	RPUSD4	87	49.258	ENSSLDG00000023507	rpusd4	85	50.000	Seriola_lalandi_dorsalis
ENSCHIG00000009975	RPUSD4	88	62.130	ENSSPUG00000001401	RPUSD4	91	62.805	Sphenodon_punctatus
ENSCHIG00000009975	RPUSD4	93	48.684	ENSSPAG00000012163	rpusd4	84	52.711	Stegastes_partitus
ENSCHIG00000009975	RPUSD4	100	84.656	ENSSSCG00000015233	RPUSD4	100	84.656	Sus_scrofa
ENSCHIG00000009975	RPUSD4	79	58.528	ENSTGUG00000000773	RPUSD4	99	58.528	Taeniopygia_guttata
ENSCHIG00000009975	RPUSD4	85	50.305	ENSTRUG00000012283	rpusd4	84	50.305	Takifugu_rubripes
ENSCHIG00000009975	RPUSD4	84	51.543	ENSTNIG00000014676	rpusd4	83	51.543	Tetraodon_nigroviridis
ENSCHIG00000009975	RPUSD4	100	85.185	ENSTTRG00000001555	RPUSD4	100	85.185	Tursiops_truncatus
ENSCHIG00000009975	RPUSD4	100	80.739	ENSUMAG00000002219	RPUSD4	100	81.003	Ursus_maritimus
ENSCHIG00000009975	RPUSD4	70	86.090	ENSVPAG00000001066	RPUSD4	100	86.090	Vicugna_pacos
ENSCHIG00000009975	RPUSD4	100	78.947	ENSVVUG00000020101	RPUSD4	100	78.947	Vulpes_vulpes
ENSCHIG00000009975	RPUSD4	93	46.944	ENSXCOG00000004676	rpusd4	83	49.371	Xiphophorus_couchianus
ENSCHIG00000009975	RPUSD4	93	47.368	ENSXMAG00000023351	rpusd4	81	50.157	Xiphophorus_maculatus