EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000010863 (Gene tree)
Gene ID: 102172132
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 27284 bases
Position: chr5:97547174-97574457
Accession: 102172132
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000007374	CSD	PF00313.22	5.8e-27	1	1
ENSCHIP00000007360	CSD	PF00313.22	6.8e-27	1	1
ENSCHIP00000007367	CSD	PF00313.22	6.8e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000015101	YBX3-201	5540	-	ENSCHIP00000007360	376 (aa)	-	UPI000846A5C1
ENSCHIT00000015117	YBX3-203	1071	-	ENSCHIP00000007374	356 (aa)	-	UPI000D18CE01
ENSCHIT00000015109	YBX3-202	3712	XM_018048477	ENSCHIP00000007367	376 (aa)	XP_017903966	UPI000846A5C1

Gene Model

Click here to download ENSCHIG00000010863's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000010863's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000010863	YBX3	81	51.961	ENSCHIG00000014169	-	89	57.547

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000010863	YBX3	100	81.183	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
ENSCHIG00000010863	YBX3	96	88.047	ENSAMEG00000009393	YBX3	90	92.163	Ailuropoda_melanoleuca
ENSCHIG00000010863	YBX3	79	69.338	ENSAPLG00000003147	YBX3	100	69.338	Anas_platyrhynchos
ENSCHIG00000010863	YBX3	88	86.520	ENSANAG00000024492	-	100	88.608	Aotus_nancymaae
ENSCHIG00000010863	YBX3	100	98.936	ENSBTAG00000009663	YBX3	100	96.543	Bos_taurus
ENSCHIG00000010863	YBX3	100	80.811	ENSCJAG00000021660	-	100	82.429	Callithrix_jacchus
ENSCHIG00000010863	YBX3	69	86.076	ENSCJAG00000033824	-	87	84.932	Callithrix_jacchus
ENSCHIG00000010863	YBX3	80	94.056	ENSCAFG00000013401	YBX3	84	94.340	Canis_familiaris
ENSCHIG00000010863	YBX3	100	81.183	ENSCAFG00020006412	YBX3	100	84.375	Canis_lupus_dingo
ENSCHIG00000010863	YBX3	100	55.616	ENSTSYG00000035821	-	100	48.947	Carlito_syrichta
ENSCHIG00000010863	YBX3	80	91.289	ENSTSYG00000004204	-	88	91.986	Carlito_syrichta
ENSCHIG00000010863	YBX3	80	88.811	ENSCAPG00000015039	YBX3	93	88.811	Cavia_aperea
ENSCHIG00000010863	YBX3	82	89.726	ENSCPOG00000011329	YBX3	94	87.382	Cavia_porcellus
ENSCHIG00000010863	YBX3	100	80.645	ENSCCAG00000016469	YBX3	100	82.687	Cebus_capucinus
ENSCHIG00000010863	YBX3	100	79.467	ENSCATG00000034411	YBX3	100	81.137	Cercocebus_atys
ENSCHIG00000010863	YBX3	80	89.860	ENSCLAG00000016030	YBX3	94	89.860	Chinchilla_lanigera
ENSCHIG00000010863	YBX3	100	80.000	ENSCSAG00000008744	YBX3	100	81.654	Chlorocebus_sabaeus
ENSCHIG00000010863	YBX3	76	72.093	ENSCHOG00000011988	YBX3	54	96.296	Choloepus_hoffmanni
ENSCHIG00000010863	YBX3	95	75.740	ENSCPBG00000014147	YBX3	88	78.095	Chrysemys_picta_bellii
ENSCHIG00000010863	YBX3	82	89.492	ENSCANG00000036801	YBX3	100	88.254	Colobus_angolensis_palliatus
ENSCHIG00000010863	YBX3	88	90.415	ENSCGRG00001016148	Ybx3	100	83.947	Cricetulus_griseus_chok1gshd
ENSCHIG00000010863	YBX3	80	89.691	ENSCGRG00000004563	Ybx3	98	89.691	Cricetulus_griseus_crigri
ENSCHIG00000010863	YBX3	79	91.901	ENSDORG00000009103	Ybx3	81	91.608	Dipodomys_ordii
ENSCHIG00000010863	YBX3	79	82.517	ENSETEG00000002557	YBX3	99	80.634	Echinops_telfairi
ENSCHIG00000010863	YBX3	89	85.266	ENSEASG00005014726	YBX3	97	92.453	Equus_asinus_asinus
ENSCHIG00000010863	YBX3	89	88.715	ENSECAG00000013777	YBX3	100	84.896	Equus_caballus
ENSCHIG00000010863	YBX3	79	88.732	ENSEEUG00000010415	YBX3	100	89.085	Erinaceus_europaeus
ENSCHIG00000010863	YBX3	93	87.574	ENSFCAG00000027748	YBX3	100	84.935	Felis_catus
ENSCHIG00000010863	YBX3	79	66.202	ENSFALG00000003661	YBX3	100	63.066	Ficedula_albicollis
ENSCHIG00000010863	YBX3	80	86.014	ENSFDAG00000021192	YBX3	92	86.014	Fukomys_damarensis
ENSCHIG00000010863	YBX3	94	56.509	ENSGALG00000031890	YBX3	94	57.465	Gallus_gallus
ENSCHIG00000010863	YBX3	95	74.260	ENSGAGG00000017780	YBX3	94	72.159	Gopherus_agassizii
ENSCHIG00000010863	YBX3	100	80.267	ENSGGOG00000001352	YBX3	100	81.912	Gorilla_gorilla
ENSCHIG00000010863	YBX3	76	80.292	ENSHGLG00000015495	-	88	75.503	Heterocephalus_glaber_female
ENSCHIG00000010863	YBX3	85	76.471	ENSHGLG00000014798	-	92	76.115	Heterocephalus_glaber_female
ENSCHIG00000010863	YBX3	56	97.727	ENSHGLG00100003589	YBX3	87	63.889	Heterocephalus_glaber_male
ENSCHIG00000010863	YBX3	95	83.578	ENSSTOG00000032577	-	97	82.029	Ictidomys_tridecemlineatus
ENSCHIG00000010863	YBX3	80	85.664	ENSSTOG00000002108	-	96	77.143	Ictidomys_tridecemlineatus
ENSCHIG00000010863	YBX3	82	68.919	ENSJJAG00000014239	Ybx3	100	82.292	Jaculus_jaculus
ENSCHIG00000010863	YBX3	100	85.054	ENSLAFG00000017247	YBX3	100	85.714	Loxodonta_africana
ENSCHIG00000010863	YBX3	100	80.645	ENSMFAG00000039369	YBX3	100	81.395	Macaca_fascicularis
ENSCHIG00000010863	YBX3	90	85.538	ENSMMUG00000022469	YBX3	99	87.850	Macaca_mulatta
ENSCHIG00000010863	YBX3	100	80.376	ENSMNEG00000045109	YBX3	100	81.137	Macaca_nemestrina
ENSCHIG00000010863	YBX3	94	80.655	ENSMLEG00000033618	YBX3	81	90.210	Mandrillus_leucophaeus
ENSCHIG00000010863	YBX3	80	66.783	ENSMGAG00000014224	YBX3	100	65.854	Meleagris_gallopavo
ENSCHIG00000010863	YBX3	90	90.062	ENSMAUG00000012185	Ybx3	98	89.905	Mesocricetus_auratus
ENSCHIG00000010863	YBX3	82	93.493	ENSMICG00000038002	-	100	84.935	Microcebus_murinus
ENSCHIG00000010863	YBX3	91	77.528	ENSMICG00000031459	-	98	77.143	Microcebus_murinus
ENSCHIG00000010863	YBX3	85	91.060	ENSMOCG00000016291	Ybx3	100	90.554	Microtus_ochrogaster
ENSCHIG00000010863	YBX3	80	83.624	ENSMODG00000018248	YBX3	91	83.624	Monodelphis_domestica
ENSCHIG00000010863	YBX3	88	90.096	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.421	Mus_caroli
ENSCHIG00000010863	YBX3	88	89.776	ENSMUSG00000030189	Ybx3	100	83.158	Mus_musculus
ENSCHIG00000010863	YBX3	88	90.415	MGP_PahariEiJ_G0022709	Ybx3	100	83.684	Mus_pahari
ENSCHIG00000010863	YBX3	88	90.096	MGP_SPRETEiJ_G0029994	Ybx3	100	83.421	Mus_spretus
ENSCHIG00000010863	YBX3	100	70.712	ENSMPUG00000011810	YBX3	100	71.756	Mustela_putorius_furo
ENSCHIG00000010863	YBX3	74	91.791	ENSMLUG00000007476	YBX3	100	89.552	Myotis_lucifugus
ENSCHIG00000010863	YBX3	82	84.122	ENSNGAG00000000710	Ybx3	100	62.025	Nannospalax_galili
ENSCHIG00000010863	YBX3	88	83.801	ENSNLEG00000034844	YBX3	99	81.818	Nomascus_leucogenys
ENSCHIG00000010863	YBX3	88	83.072	ENSODEG00000017957	YBX3	94	84.326	Octodon_degus
ENSCHIG00000010863	YBX3	82	87.075	ENSOCUG00000001889	YBX3	88	86.469	Oryctolagus_cuniculus
ENSCHIG00000010863	YBX3	100	83.820	ENSOGAG00000013245	YBX3	100	82.398	Otolemur_garnettii
ENSCHIG00000010863	YBX3	83	88.215	ENSOARG00000020919	YBX3	100	88.215	Ovis_aries
ENSCHIG00000010863	YBX3	100	79.404	ENSPPAG00000039068	YBX3	100	79.319	Pan_paniscus
ENSCHIG00000010863	YBX3	93	87.870	ENSPPRG00000005859	YBX3	100	85.195	Panthera_pardus
ENSCHIG00000010863	YBX3	79	94.346	ENSPTIG00000005322	YBX3	81	94.035	Panthera_tigris_altaica
ENSCHIG00000010863	YBX3	100	80.533	ENSPTRG00000004681	YBX3	100	82.171	Pan_troglodytes
ENSCHIG00000010863	YBX3	100	80.376	ENSPANG00000010280	YBX3	100	81.137	Papio_anubis
ENSCHIG00000010863	YBX3	59	99.038	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSCHIG00000010863	YBX3	89	89.969	ENSPEMG00000012132	-	99	89.905	Peromyscus_maniculatus_bairdii
ENSCHIG00000010863	YBX3	63	96.491	ENSPEMG00000010391	-	91	68.051	Peromyscus_maniculatus_bairdii
ENSCHIG00000010863	YBX3	72	79.845	ENSPCIG00000029949	YBX3	100	79.845	Phascolarctos_cinereus
ENSCHIG00000010863	YBX3	100	80.267	ENSPPYG00000004279	YBX3	100	81.395	Pongo_abelii
ENSCHIG00000010863	YBX3	78	84.028	ENSPCAG00000001397	YBX3	98	84.281	Procavia_capensis
ENSCHIG00000010863	YBX3	51	88.525	ENSPCOG00000011663	YBX3	100	77.941	Propithecus_coquereli
ENSCHIG00000010863	YBX3	88	76.899	ENSPVAG00000006740	YBX3	77	84.333	Pteropus_vampyrus
ENSCHIG00000010863	YBX3	88	91.054	ENSRNOG00000005480	Ybx3	100	84.211	Rattus_norvegicus
ENSCHIG00000010863	YBX3	100	81.941	ENSRBIG00000039208	YBX3	100	81.137	Rhinopithecus_bieti
ENSCHIG00000010863	YBX3	100	82.210	ENSRROG00000029638	YBX3	100	81.137	Rhinopithecus_roxellana
ENSCHIG00000010863	YBX3	96	79.769	ENSSBOG00000030573	YBX3	99	79.646	Saimiri_boliviensis_boliviensis
ENSCHIG00000010863	YBX3	79	79.381	ENSSHAG00000003262	YBX3	98	79.725	Sarcophilus_harrisii
ENSCHIG00000010863	YBX3	50	73.154	ENSSPUG00000009911	-	51	88.393	Sphenodon_punctatus
ENSCHIG00000010863	YBX3	93	87.390	ENSSSCG00000000633	YBX3	100	87.113	Sus_scrofa
ENSCHIG00000010863	YBX3	79	67.719	ENSTGUG00000012047	YBX3	100	67.018	Taeniopygia_guttata
ENSCHIG00000010863	YBX3	100	81.593	ENSTBEG00000012570	YBX3	87	86.751	Tupaia_belangeri
ENSCHIG00000010863	YBX3	73	86.466	ENSTTRG00000008045	YBX3	100	87.218	Tursiops_truncatus
ENSCHIG00000010863	YBX3	78	91.304	ENSUAMG00000016662	YBX3	100	91.304	Ursus_americanus
ENSCHIG00000010863	YBX3	79	94.700	ENSUMAG00000016118	YBX3	94	94.386	Ursus_maritimus
ENSCHIG00000010863	YBX3	79	65.972	ENSVPAG00000000876	YBX3	100	69.258	Vicugna_pacos
ENSCHIG00000010863	YBX3	78	90.217	ENSVVUG00000004956	YBX3	100	90.580	Vulpes_vulpes
ENSCHIG00000010863	YBX3	55	92.222	ENSXETG00000016239	ybx3	96	54.062	Xenopus_tropicalis