EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000010928 (Gene tree)
Gene ID: 106502273
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 7311 bases
Position: chr7:103870337-103877647
Accession: 106502273
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000007426	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000015168	LSM4-201	456	XM_018051433	ENSCHIP00000007426	151 (aa)	XP_017906922	UPI000D18E09D

Gene Model

Click here to download ENSCHIG00000010928's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03018	RNA degradation	KEGG
chx03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000010928's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000010928	LSM4	64	31.313	ENSCHIG00000016153	LSM2	82	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000010928	LSM4	91	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSCHIG00000010928	LSM4	90	73.333	ENSAPOG00000005643	lsm4	58	98.851	Acanthochromis_polyacanthus
ENSCHIG00000010928	LSM4	92	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSCHIG00000010928	LSM4	90	77.465	ENSAOCG00000006414	lsm4	59	98.851	Amphiprion_ocellaris
ENSCHIG00000010928	LSM4	90	74.825	ENSAPEG00000006238	lsm4	58	98.851	Amphiprion_percula
ENSCHIG00000010928	LSM4	65	96.939	ENSATEG00000016559	lsm4	57	98.851	Anabas_testudineus
ENSCHIG00000010928	LSM4	91	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSCHIG00000010928	LSM4	72	83.740	ENSACLG00000022738	lsm4	59	98.851	Astatotilapia_calliptera
ENSCHIG00000010928	LSM4	90	81.022	ENSAMXG00000016932	lsm4	61	97.701	Astyanax_mexicanus
ENSCHIG00000010928	LSM4	92	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSCHIG00000010928	LSM4	54	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSCHIG00000010928	LSM4	91	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSCHIG00000010928	LSM4	97	93.878	ENSCAFG00000014900	LSM4	96	93.878	Canis_familiaris
ENSCHIG00000010928	LSM4	91	100.000	ENSCAFG00020012137	LSM4	99	100.000	Canis_lupus_dingo
ENSCHIG00000010928	LSM4	91	99.275	ENSTSYG00000030906	LSM4	100	99.200	Carlito_syrichta
ENSCHIG00000010928	LSM4	91	97.826	ENSCAPG00000014140	LSM4	99	97.826	Cavia_aperea
ENSCHIG00000010928	LSM4	91	97.826	ENSCPOG00000024117	LSM4	99	97.826	Cavia_porcellus
ENSCHIG00000010928	LSM4	91	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSCHIG00000010928	LSM4	91	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSCHIG00000010928	LSM4	91	96.377	ENSCLAG00000010828	LSM4	99	96.377	Chinchilla_lanigera
ENSCHIG00000010928	LSM4	91	100.000	ENSCSAG00000005370	LSM4	99	100.000	Chlorocebus_sabaeus
ENSCHIG00000010928	LSM4	91	81.884	ENSCPBG00000012925	LSM4	99	89.855	Chrysemys_picta_bellii
ENSCHIG00000010928	LSM4	56	91.765	ENSCING00000007519	-	69	91.954	Ciona_intestinalis
ENSCHIG00000010928	LSM4	56	92.941	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSCHIG00000010928	LSM4	91	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSCHIG00000010928	LSM4	91	95.652	ENSCGRG00001014436	Lsm4	99	95.652	Cricetulus_griseus_chok1gshd
ENSCHIG00000010928	LSM4	91	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSCHIG00000010928	LSM4	64	95.833	ENSCSEG00000016127	lsm4	61	97.701	Cynoglossus_semilaevis
ENSCHIG00000010928	LSM4	81	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSCHIG00000010928	LSM4	90	77.372	ENSCVAG00000010601	lsm4	61	97.701	Cyprinodon_variegatus
ENSCHIG00000010928	LSM4	89	78.571	ENSDARG00000023852	lsm4	61	98.851	Danio_rerio
ENSCHIG00000010928	LSM4	91	97.826	ENSDORG00000024225	Lsm4	99	97.826	Dipodomys_ordii
ENSCHIG00000010928	LSM4	64	81.250	FBgn0032240	CG17768	56	88.506	Drosophila_melanogaster
ENSCHIG00000010928	LSM4	82	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSCHIG00000010928	LSM4	50	92.000	ENSEBUG00000003639	-	52	88.608	Eptatretus_burgeri
ENSCHIG00000010928	LSM4	91	100.000	ENSECAG00000010141	LSM4	56	100.000	Equus_caballus
ENSCHIG00000010928	LSM4	87	82.090	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSCHIG00000010928	LSM4	91	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSCHIG00000010928	LSM4	92	81.295	ENSFALG00000009478	LSM4	100	89.928	Ficedula_albicollis
ENSCHIG00000010928	LSM4	91	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSCHIG00000010928	LSM4	64	96.907	ENSGMOG00000007729	lsm4	60	98.864	Gadus_morhua
ENSCHIG00000010928	LSM4	91	81.159	ENSGALG00000003385	LSM4	99	89.855	Gallus_gallus
ENSCHIG00000010928	LSM4	75	80.315	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSCHIG00000010928	LSM4	62	97.872	ENSGACG00000008140	lsm4	58	98.851	Gasterosteus_aculeatus
ENSCHIG00000010928	LSM4	91	81.884	ENSGAGG00000017812	LSM4	99	89.855	Gopherus_agassizii
ENSCHIG00000010928	LSM4	91	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSCHIG00000010928	LSM4	91	97.101	ENSHGLG00000006568	LSM4	99	97.101	Heterocephalus_glaber_female
ENSCHIG00000010928	LSM4	62	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSCHIG00000010928	LSM4	90	77.206	ENSHCOG00000008819	lsm4	61	98.851	Hippocampus_comes
ENSCHIG00000010928	LSM4	90	81.022	ENSIPUG00000005368	Lsm4	61	98.851	Ictalurus_punctatus
ENSCHIG00000010928	LSM4	91	100.000	ENSSTOG00000016494	LSM4	99	100.000	Ictidomys_tridecemlineatus
ENSCHIG00000010928	LSM4	91	97.101	ENSJJAG00000017420	Lsm4	99	97.101	Jaculus_jaculus
ENSCHIG00000010928	LSM4	56	97.647	ENSKMAG00000005073	lsm4	60	97.701	Kryptolebias_marmoratus
ENSCHIG00000010928	LSM4	65	96.939	ENSLBEG00000027930	lsm4	58	98.851	Labrus_bergylta
ENSCHIG00000010928	LSM4	90	83.088	ENSLACG00000015861	LSM4	97	83.088	Latimeria_chalumnae
ENSCHIG00000010928	LSM4	85	83.594	ENSLOCG00000002025	lsm4	62	97.701	Lepisosteus_oculatus
ENSCHIG00000010928	LSM4	92	98.561	ENSLAFG00000017459	LSM4	100	98.561	Loxodonta_africana
ENSCHIG00000010928	LSM4	91	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSCHIG00000010928	LSM4	91	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSCHIG00000010928	LSM4	91	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSCHIG00000010928	LSM4	91	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSCHIG00000010928	LSM4	90	79.562	ENSMAMG00000006190	lsm4	61	98.851	Mastacembelus_armatus
ENSCHIG00000010928	LSM4	72	83.740	ENSMZEG00005016420	lsm4	60	98.851	Maylandia_zebra
ENSCHIG00000010928	LSM4	92	82.857	ENSMGAG00000004976	LSM4	100	89.928	Meleagris_gallopavo
ENSCHIG00000010928	LSM4	91	99.275	ENSMICG00000000222	LSM4	100	99.200	Microcebus_murinus
ENSCHIG00000010928	LSM4	91	96.377	ENSMOCG00000020861	Lsm4	99	96.377	Microtus_ochrogaster
ENSCHIG00000010928	LSM4	82	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSCHIG00000010928	LSM4	90	76.259	ENSMALG00000018159	lsm4	61	97.701	Monopterus_albus
ENSCHIG00000010928	LSM4	91	96.377	MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	Mus_caroli
ENSCHIG00000010928	LSM4	91	96.377	ENSMUSG00000031848	Lsm4	99	96.377	Mus_musculus
ENSCHIG00000010928	LSM4	91	96.377	MGP_PahariEiJ_G0021623	Lsm4	99	96.377	Mus_pahari
ENSCHIG00000010928	LSM4	91	96.377	MGP_SPRETEiJ_G0032276	Lsm4	99	96.377	Mus_spretus
ENSCHIG00000010928	LSM4	91	100.000	ENSMPUG00000015589	LSM4	99	100.000	Mustela_putorius_furo
ENSCHIG00000010928	LSM4	92	100.000	ENSMLUG00000004010	LSM4	100	100.000	Myotis_lucifugus
ENSCHIG00000010928	LSM4	91	96.377	ENSNGAG00000008644	Lsm4	100	96.241	Nannospalax_galili
ENSCHIG00000010928	LSM4	68	94.118	ENSNBRG00000022150	lsm4	56	95.604	Neolamprologus_brichardi
ENSCHIG00000010928	LSM4	82	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSCHIG00000010928	LSM4	82	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSCHIG00000010928	LSM4	91	73.188	ENSODEG00000011712	-	99	73.188	Octodon_degus
ENSCHIG00000010928	LSM4	91	97.101	ENSODEG00000020549	-	99	97.101	Octodon_degus
ENSCHIG00000010928	LSM4	91	86.957	ENSODEG00000004519	-	99	74.638	Octodon_degus
ENSCHIG00000010928	LSM4	72	83.740	ENSONIG00000012724	lsm4	59	98.851	Oreochromis_niloticus
ENSCHIG00000010928	LSM4	58	93.478	ENSOANG00000007434	LSM4	79	93.478	Ornithorhynchus_anatinus
ENSCHIG00000010928	LSM4	90	85.000	ENSORLG00000008391	lsm4	60	97.701	Oryzias_latipes
ENSCHIG00000010928	LSM4	90	72.667	ENSORLG00020014829	lsm4	60	97.701	Oryzias_latipes_hni
ENSCHIG00000010928	LSM4	90	85.000	ENSORLG00015010205	lsm4	60	97.701	Oryzias_latipes_hsok
ENSCHIG00000010928	LSM4	91	83.333	ENSOMEG00000003606	lsm4	60	97.701	Oryzias_melastigma
ENSCHIG00000010928	LSM4	66	99.000	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSCHIG00000010928	LSM4	79	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSCHIG00000010928	LSM4	91	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSCHIG00000010928	LSM4	91	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSCHIG00000010928	LSM4	91	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSCHIG00000010928	LSM4	91	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSCHIG00000010928	LSM4	91	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSCHIG00000010928	LSM4	90	81.618	ENSPKIG00000006154	lsm4	62	98.851	Paramormyrops_kingsleyae
ENSCHIG00000010928	LSM4	91	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSCHIG00000010928	LSM4	93	95.000	ENSPEMG00000001358	Lsm4	99	96.377	Peromyscus_maniculatus_bairdii
ENSCHIG00000010928	LSM4	90	76.224	ENSPLAG00000016267	lsm4	61	98.851	Poecilia_latipinna
ENSCHIG00000010928	LSM4	91	78.571	ENSPMEG00000016378	lsm4	63	98.864	Poecilia_mexicana
ENSCHIG00000010928	LSM4	91	100.000	ENSPPYG00000009736	LSM4	99	100.000	Pongo_abelii
ENSCHIG00000010928	LSM4	82	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSCHIG00000010928	LSM4	91	99.275	ENSPCOG00000019837	LSM4	100	99.200	Propithecus_coquereli
ENSCHIG00000010928	LSM4	91	100.000	ENSPVAG00000015383	LSM4	99	100.000	Pteropus_vampyrus
ENSCHIG00000010928	LSM4	72	83.740	ENSPNYG00000016794	lsm4	60	98.851	Pundamilia_nyererei
ENSCHIG00000010928	LSM4	88	82.090	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSCHIG00000010928	LSM4	91	96.377	ENSRNOG00000019572	Lsm4	99	96.377	Rattus_norvegicus
ENSCHIG00000010928	LSM4	91	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSCHIG00000010928	LSM4	91	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSCHIG00000010928	LSM4	54	40.217	YER112W	LSM4	51	38.947	Saccharomyces_cerevisiae
ENSCHIG00000010928	LSM4	83	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSCHIG00000010928	LSM4	91	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSCHIG00000010928	LSM4	90	80.147	ENSSFOG00015021067	lsm4	62	98.851	Scleropages_formosus
ENSCHIG00000010928	LSM4	91	71.631	ENSSMAG00000021020	lsm4	94	73.050	Scophthalmus_maximus
ENSCHIG00000010928	LSM4	65	96.939	ENSSDUG00000009588	lsm4	52	98.851	Seriola_dumerili
ENSCHIG00000010928	LSM4	65	96.939	ENSSLDG00000006827	lsm4	52	98.851	Seriola_lalandi_dorsalis
ENSCHIG00000010928	LSM4	58	98.864	ENSSPUG00000010166	LSM4	57	98.864	Sphenodon_punctatus
ENSCHIG00000010928	LSM4	90	73.333	ENSSPAG00000011615	lsm4	58	98.851	Stegastes_partitus
ENSCHIG00000010928	LSM4	91	100.000	ENSSSCG00000034314	LSM4	99	100.000	Sus_scrofa
ENSCHIG00000010928	LSM4	72	81.301	ENSTRUG00000021737	lsm4	61	96.552	Takifugu_rubripes
ENSCHIG00000010928	LSM4	90	80.576	ENSTNIG00000010191	lsm4	60	97.701	Tetraodon_nigroviridis
ENSCHIG00000010928	LSM4	92	100.000	ENSUAMG00000000665	LSM4	100	100.000	Ursus_americanus
ENSCHIG00000010928	LSM4	91	100.000	ENSUMAG00000009013	LSM4	99	100.000	Ursus_maritimus
ENSCHIG00000010928	LSM4	92	99.281	ENSVVUG00000008136	LSM4	71	99.281	Vulpes_vulpes
ENSCHIG00000010928	LSM4	91	91.304	ENSXETG00000024933	lsm4	99	89.130	Xenopus_tropicalis