EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000011008 (Gene tree)
Gene ID: 102179148
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 12865 bases
Position: chr23:22416248-22429112
Accession: 102179148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000007677	Anticodon_1	PF08264.13	4.4e-32	1	1
ENSCHIP00000007694	Anticodon_1	PF08264.13	4.4e-32	1	1
ENSCHIP00000007746	Anticodon_1	PF08264.13	1.2e-26	1	1
ENSCHIP00000007738	Anticodon_1	PF08264.13	1.3e-26	1	1
ENSCHIP00000007694	tRNA-synt_1	PF00133.22	2.2e-203	1	1
ENSCHIP00000007677	tRNA-synt_1	PF00133.22	2.3e-203	1	1
ENSCHIP00000007746	tRNA-synt_1	PF00133.22	6.6e-187	1	2
ENSCHIP00000007746	tRNA-synt_1	PF00133.22	6.6e-187	2	2
ENSCHIP00000007738	tRNA-synt_1	PF00133.22	6.9e-187	1	2
ENSCHIP00000007738	tRNA-synt_1	PF00133.22	6.9e-187	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000015442	VARS-202	5474	XM_018038627	ENSCHIP00000007694	1264 (aa)	XP_017894116	UPI0008475B29
ENSCHIT00000015487	VARS-203	3729	-	ENSCHIP00000007738	1242 (aa)	-	UPI000D1963F1
ENSCHIT00000015425	VARS-201	5510	XM_018038625	ENSCHIP00000007677	1276 (aa)	XP_017894114	UPI0008465443
ENSCHIT00000015495	VARS-204	3711	-	ENSCHIP00000007746	1236 (aa)	-	UPI000D19463A

Gene Model

Click here to download ENSCHIG00000011008's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000011008's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000011008	VARS	81	51.013	ENSCHIG00000007847	VARS2	91	52.362

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000011008	VARS	100	95.095	ENSG00000204394	VARS	100	95.977	Homo_sapiens
ENSCHIG00000011008	VARS	98	64.715	ENSAPOG00000020921	vars	99	64.555	Acanthochromis_polyacanthus
ENSCHIG00000011008	VARS	98	64.715	ENSAPOG00000020691	vars	99	64.555	Acanthochromis_polyacanthus
ENSCHIG00000011008	VARS	100	95.573	ENSAMEG00000006417	VARS	100	95.573	Ailuropoda_melanoleuca
ENSCHIG00000011008	VARS	100	65.804	ENSACIG00000013752	vars	100	65.566	Amphilophus_citrinellus
ENSCHIG00000011008	VARS	100	64.934	ENSAOCG00000002447	vars	100	64.359	Amphiprion_ocellaris
ENSCHIG00000011008	VARS	100	64.779	ENSAPEG00000010638	vars	99	64.798	Amphiprion_percula
ENSCHIG00000011008	VARS	100	63.765	ENSATEG00000020219	vars	100	64.381	Anabas_testudineus
ENSCHIG00000011008	VARS	83	78.072	ENSACAG00000029133	-	99	70.736	Anolis_carolinensis
ENSCHIG00000011008	VARS	100	95.174	ENSANAG00000015453	VARS	100	95.174	Aotus_nancymaae
ENSCHIG00000011008	VARS	100	65.271	ENSACLG00000025699	vars	97	65.035	Astatotilapia_calliptera
ENSCHIG00000011008	VARS	94	66.639	ENSAMXG00000017716	vars	95	66.639	Astyanax_mexicanus
ENSCHIG00000011008	VARS	100	99.209	ENSBTAG00000005631	VARS	100	99.209	Bos_taurus
ENSCHIG00000011008	VARS	100	95.095	ENSCJAG00000002604	VARS	100	95.095	Callithrix_jacchus
ENSCHIG00000011008	VARS	100	94.778	ENSCAFG00000000636	VARS	100	94.778	Canis_familiaris
ENSCHIG00000011008	VARS	94	94.932	ENSCAFG00020020790	VARS	96	94.932	Canis_lupus_dingo
ENSCHIG00000011008	VARS	100	95.491	ENSTSYG00000001567	VARS	100	95.491	Carlito_syrichta
ENSCHIG00000011008	VARS	91	90.830	ENSCAPG00000013736	VARS	99	90.830	Cavia_aperea
ENSCHIG00000011008	VARS	100	91.772	ENSCPOG00000000870	VARS	100	91.772	Cavia_porcellus
ENSCHIG00000011008	VARS	100	95.095	ENSCCAG00000035656	VARS	100	95.274	Cebus_capucinus
ENSCHIG00000011008	VARS	100	95.016	ENSCATG00000022394	VARS	100	95.016	Cercocebus_atys
ENSCHIG00000011008	VARS	88	89.326	ENSCLAG00000009470	VARS	91	89.478	Chinchilla_lanigera
ENSCHIG00000011008	VARS	100	95.095	ENSCSAG00000008784	VARS	100	95.095	Chlorocebus_sabaeus
ENSCHIG00000011008	VARS	79	72.403	ENSCPBG00000007943	VARS	96	74.127	Chrysemys_picta_bellii
ENSCHIG00000011008	VARS	100	95.016	ENSCANG00000033570	VARS	100	95.016	Colobus_angolensis_palliatus
ENSCHIG00000011008	VARS	100	92.801	ENSCGRG00001005686	Vars	100	92.801	Cricetulus_griseus_chok1gshd
ENSCHIG00000011008	VARS	92	87.940	ENSCGRG00000013352	Vars	78	87.940	Cricetulus_griseus_crigri
ENSCHIG00000011008	VARS	100	64.664	ENSCSEG00000019652	vars	100	64.506	Cynoglossus_semilaevis
ENSCHIG00000011008	VARS	100	65.657	ENSCVAG00000022398	vars	100	65.657	Cyprinodon_variegatus
ENSCHIG00000011008	VARS	100	64.934	ENSDARG00000044575	vars	100	64.930	Danio_rerio
ENSCHIG00000011008	VARS	84	92.756	ENSDORG00000016433	Vars	94	93.792	Dipodomys_ordii
ENSCHIG00000011008	VARS	69	86.799	ENSETEG00000003824	VARS	76	86.799	Echinops_telfairi
ENSCHIG00000011008	VARS	50	70.833	ENSEBUG00000007086	vars	84	69.983	Eptatretus_burgeri
ENSCHIG00000011008	VARS	57	62.500	ENSEBUG00000004637	vars	100	62.775	Eptatretus_burgeri
ENSCHIG00000011008	VARS	100	96.677	ENSEASG00005015673	VARS	100	96.677	Equus_asinus_asinus
ENSCHIG00000011008	VARS	100	96.522	ENSECAG00000014620	VARS	100	96.522	Equus_caballus
ENSCHIG00000011008	VARS	84	92.042	ENSEEUG00000004116	VARS	83	92.042	Erinaceus_europaeus
ENSCHIG00000011008	VARS	100	64.628	ENSELUG00000006550	vars	97	64.706	Esox_lucius
ENSCHIG00000011008	VARS	100	95.965	ENSFCAG00000004510	VARS	100	95.965	Felis_catus
ENSCHIG00000011008	VARS	82	92.165	ENSFDAG00000011401	VARS	100	92.165	Fukomys_damarensis
ENSCHIG00000011008	VARS	100	65.346	ENSFHEG00000010672	vars	100	65.501	Fundulus_heteroclitus
ENSCHIG00000011008	VARS	93	66.000	ENSGMOG00000014908	vars	97	66.083	Gadus_morhua
ENSCHIG00000011008	VARS	100	66.019	ENSGAFG00000021630	vars	100	66.019	Gambusia_affinis
ENSCHIG00000011008	VARS	93	66.249	ENSGACG00000009601	vars	98	65.917	Gasterosteus_aculeatus
ENSCHIG00000011008	VARS	50	65.087	ENSGAGG00000006508	-	91	66.505	Gopherus_agassizii
ENSCHIG00000011008	VARS	100	95.253	ENSGGOG00000011364	VARS	100	95.253	Gorilla_gorilla
ENSCHIG00000011008	VARS	100	65.271	ENSHBUG00000017151	vars	97	65.035	Haplochromis_burtoni
ENSCHIG00000011008	VARS	100	90.665	ENSHGLG00000011646	VARS	100	90.348	Heterocephalus_glaber_female
ENSCHIG00000011008	VARS	93	83.306	ENSHGLG00100018062	VARS	97	87.546	Heterocephalus_glaber_male
ENSCHIG00000011008	VARS	99	64.861	ENSHCOG00000012198	vars	96	72.643	Hippocampus_comes
ENSCHIG00000011008	VARS	100	65.370	ENSIPUG00000005218	vars	100	65.370	Ictalurus_punctatus
ENSCHIG00000011008	VARS	100	94.783	ENSSTOG00000013112	VARS	100	94.783	Ictidomys_tridecemlineatus
ENSCHIG00000011008	VARS	100	91.377	ENSJJAG00000019749	-	100	90.744	Jaculus_jaculus
ENSCHIG00000011008	VARS	100	72.152	ENSJJAG00000015343	-	99	73.333	Jaculus_jaculus
ENSCHIG00000011008	VARS	100	65.008	ENSKMAG00000009455	vars	100	64.613	Kryptolebias_marmoratus
ENSCHIG00000011008	VARS	100	63.880	ENSLBEG00000010341	vars	100	64.427	Labrus_bergylta
ENSCHIG00000011008	VARS	94	62.366	ENSLACG00000015232	VARS	99	62.695	Latimeria_chalumnae
ENSCHIG00000011008	VARS	100	67.084	ENSLOCG00000004240	vars	100	66.849	Lepisosteus_oculatus
ENSCHIG00000011008	VARS	100	94.066	ENSLAFG00000023090	VARS	100	93.592	Loxodonta_africana
ENSCHIG00000011008	VARS	100	95.095	ENSMFAG00000001032	VARS	100	95.095	Macaca_fascicularis
ENSCHIG00000011008	VARS	100	95.095	ENSMMUG00000006828	VARS	100	95.095	Macaca_mulatta
ENSCHIG00000011008	VARS	100	95.095	ENSMNEG00000042072	VARS	100	95.095	Macaca_nemestrina
ENSCHIG00000011008	VARS	100	95.174	ENSMLEG00000039307	VARS	100	95.174	Mandrillus_leucophaeus
ENSCHIG00000011008	VARS	100	64.519	ENSMAMG00000003949	vars	100	64.380	Mastacembelus_armatus
ENSCHIG00000011008	VARS	100	65.349	ENSMZEG00005018327	vars	100	64.641	Maylandia_zebra
ENSCHIG00000011008	VARS	100	92.484	ENSMAUG00000006715	Vars	100	92.484	Mesocricetus_auratus
ENSCHIG00000011008	VARS	100	94.383	ENSMICG00000003548	VARS	100	94.383	Microcebus_murinus
ENSCHIG00000011008	VARS	100	90.190	ENSMOCG00000015404	Vars	100	90.032	Microtus_ochrogaster
ENSCHIG00000011008	VARS	100	64.544	ENSMMOG00000015801	vars	100	64.465	Mola_mola
ENSCHIG00000011008	VARS	100	86.788	ENSMODG00000015204	-	100	86.788	Monodelphis_domestica
ENSCHIG00000011008	VARS	99	64.601	ENSMALG00000022532	vars	99	64.363	Monopterus_albus
ENSCHIG00000011008	VARS	100	93.196	MGP_CAROLIEiJ_G0021491	Vars	100	92.722	Mus_caroli
ENSCHIG00000011008	VARS	100	93.038	ENSMUSG00000007029	Vars	100	92.563	Mus_musculus
ENSCHIG00000011008	VARS	100	92.722	MGP_PahariEiJ_G0020486	Vars	100	92.326	Mus_pahari
ENSCHIG00000011008	VARS	100	93.117	MGP_SPRETEiJ_G0022396	Vars	100	92.642	Mus_spretus
ENSCHIG00000011008	VARS	100	95.570	ENSMPUG00000010821	VARS	100	95.570	Mustela_putorius_furo
ENSCHIG00000011008	VARS	78	93.421	ENSMLUG00000013126	VARS	100	94.028	Myotis_lucifugus
ENSCHIG00000011008	VARS	100	92.405	ENSNGAG00000012151	Vars	100	92.722	Nannospalax_galili
ENSCHIG00000011008	VARS	100	65.039	ENSNBRG00000020520	vars	100	64.802	Neolamprologus_brichardi
ENSCHIG00000011008	VARS	100	94.462	ENSNLEG00000006351	VARS	100	94.462	Nomascus_leucogenys
ENSCHIG00000011008	VARS	100	83.307	ENSMEUG00000011378	VARS	100	83.307	Notamacropus_eugenii
ENSCHIG00000011008	VARS	100	93.592	ENSOPRG00000003607	VARS	100	93.592	Ochotona_princeps
ENSCHIG00000011008	VARS	100	90.902	ENSODEG00000017681	VARS	100	90.348	Octodon_degus
ENSCHIG00000011008	VARS	100	65.598	ENSONIG00000013064	vars	99	68.384	Oreochromis_niloticus
ENSCHIG00000011008	VARS	77	79.429	ENSOANG00000005400	VARS	98	78.597	Ornithorhynchus_anatinus
ENSCHIG00000011008	VARS	100	91.469	ENSOCUG00000022463	VARS	100	91.627	Oryctolagus_cuniculus
ENSCHIG00000011008	VARS	100	64.719	ENSORLG00000013063	vars	100	64.815	Oryzias_latipes
ENSCHIG00000011008	VARS	100	65.194	ENSORLG00020003504	vars	100	65.271	Oryzias_latipes_hni
ENSCHIG00000011008	VARS	100	65.244	ENSORLG00015009001	vars	100	65.244	Oryzias_latipes_hsok
ENSCHIG00000011008	VARS	100	65.012	ENSOMEG00000015016	vars	100	65.012	Oryzias_melastigma
ENSCHIG00000011008	VARS	100	94.146	ENSOGAG00000007515	VARS	100	94.146	Otolemur_garnettii
ENSCHIG00000011008	VARS	100	95.491	ENSPPAG00000034012	VARS	100	95.491	Pan_paniscus
ENSCHIG00000011008	VARS	100	96.123	ENSPPRG00000014855	VARS	100	96.123	Panthera_pardus
ENSCHIG00000011008	VARS	86	96.429	ENSPTIG00000010462	VARS	95	96.429	Panthera_tigris_altaica
ENSCHIG00000011008	VARS	100	95.411	ENSPTRG00000017985	VARS	100	95.411	Pan_troglodytes
ENSCHIG00000011008	VARS	100	93.454	ENSPANG00000014565	VARS	100	93.454	Papio_anubis
ENSCHIG00000011008	VARS	96	68.432	ENSPKIG00000016304	vars	100	63.784	Paramormyrops_kingsleyae
ENSCHIG00000011008	VARS	100	66.246	ENSPMGG00000023909	vars	100	66.088	Periophthalmus_magnuspinnatus
ENSCHIG00000011008	VARS	100	93.829	ENSPEMG00000006639	Vars	100	93.829	Peromyscus_maniculatus_bairdii
ENSCHIG00000011008	VARS	100	86.472	ENSPCIG00000018553	VARS	100	86.472	Phascolarctos_cinereus
ENSCHIG00000011008	VARS	100	65.837	ENSPFOG00000015690	vars	100	65.837	Poecilia_formosa
ENSCHIG00000011008	VARS	100	66.483	ENSPLAG00000009590	vars	100	66.168	Poecilia_latipinna
ENSCHIG00000011008	VARS	100	65.837	ENSPMEG00000004708	vars	100	65.837	Poecilia_mexicana
ENSCHIG00000011008	VARS	100	63.937	ENSPREG00000013264	vars	100	63.686	Poecilia_reticulata
ENSCHIG00000011008	VARS	100	93.434	ENSPPYG00000016460	VARS	100	93.434	Pongo_abelii
ENSCHIG00000011008	VARS	86	92.998	ENSPCAG00000013565	VARS	86	92.998	Procavia_capensis
ENSCHIG00000011008	VARS	100	94.783	ENSPCOG00000010942	VARS	100	95.257	Propithecus_coquereli
ENSCHIG00000011008	VARS	100	91.772	ENSPVAG00000012403	VARS	100	91.772	Pteropus_vampyrus
ENSCHIG00000011008	VARS	100	65.271	ENSPNYG00000022511	vars	100	65.035	Pundamilia_nyererei
ENSCHIG00000011008	VARS	100	65.477	ENSPNAG00000020962	vars	100	65.167	Pygocentrus_nattereri
ENSCHIG00000011008	VARS	100	93.987	ENSRNOG00000000867	Vars	100	93.987	Rattus_norvegicus
ENSCHIG00000011008	VARS	100	95.174	ENSRBIG00000041669	VARS	100	95.174	Rhinopithecus_bieti
ENSCHIG00000011008	VARS	100	95.174	ENSRROG00000045490	VARS	100	95.174	Rhinopithecus_roxellana
ENSCHIG00000011008	VARS	100	95.253	ENSSBOG00000035402	VARS	100	95.253	Saimiri_boliviensis_boliviensis
ENSCHIG00000011008	VARS	100	82.090	ENSSHAG00000006937	VARS	100	82.325	Sarcophilus_harrisii
ENSCHIG00000011008	VARS	100	64.838	ENSSFOG00015014272	vars	99	72.312	Scleropages_formosus
ENSCHIG00000011008	VARS	100	63.700	ENSSMAG00000009596	vars	99	63.538	Scophthalmus_maximus
ENSCHIG00000011008	VARS	100	64.938	ENSSDUG00000014177	vars	100	64.701	Seriola_dumerili
ENSCHIG00000011008	VARS	100	64.861	ENSSLDG00000025316	vars	100	64.701	Seriola_lalandi_dorsalis
ENSCHIG00000011008	VARS	100	65.062	ENSSPAG00000017068	vars	100	64.981	Stegastes_partitus
ENSCHIG00000011008	VARS	100	96.126	ENSSSCG00000038950	VARS	100	96.126	Sus_scrofa
ENSCHIG00000011008	VARS	81	65.686	ENSTRUG00000012307	vars	96	65.686	Takifugu_rubripes
ENSCHIG00000011008	VARS	100	64.973	ENSTNIG00000008011	vars	100	64.812	Tetraodon_nigroviridis
ENSCHIG00000011008	VARS	54	98.502	ENSTBEG00000004728	-	60	98.502	Tupaia_belangeri
ENSCHIG00000011008	VARS	96	92.920	ENSTTRG00000014128	VARS	100	88.212	Tursiops_truncatus
ENSCHIG00000011008	VARS	100	91.569	ENSUAMG00000010424	VARS	100	91.509	Ursus_americanus
ENSCHIG00000011008	VARS	93	95.556	ENSUMAG00000013486	VARS	98	95.079	Ursus_maritimus
ENSCHIG00000011008	VARS	100	94.545	ENSVVUG00000021323	VARS	100	94.308	Vulpes_vulpes
ENSCHIG00000011008	VARS	96	63.056	ENSXETG00000024076	vars	98	62.298	Xenopus_tropicalis
ENSCHIG00000011008	VARS	100	65.591	ENSXCOG00000019172	vars	100	65.748	Xiphophorus_couchianus
ENSCHIG00000011008	VARS	100	65.681	ENSXMAG00000010927	vars	100	65.681	Xiphophorus_maculatus