EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000011018 (Gene tree)
Gene ID: 102189849
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 32114 bases
Position: chr7:104385382-104417495
Accession: 102189849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000007613	UPF1_Zn_bind	PF09416.10	8e-75	1	1
ENSCHIP00000007632	UPF1_Zn_bind	PF09416.10	8.1e-75	1	1
ENSCHIP00000007613	ResIII	PF04851.15	2.8e-05	1	1
ENSCHIP00000007632	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000015379	UPF1-202	3381	-	ENSCHIP00000007632	1126 (aa)	-	UPI000D19236A
ENSCHIT00000015358	UPF1-201	4277	XM_018051458	ENSCHIP00000007613	1116 (aa)	XP_017906947	UPI00005BCCC9

Gene Model

Click here to download ENSCHIG00000011018's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000011018's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000011018	UPF1	100	99.196	ENSG00000005007	UPF1	100	99.196	Homo_sapiens
ENSCHIG00000011018	UPF1	100	92.934	ENSAPOG00000010916	-	100	92.934	Acanthochromis_polyacanthus
ENSCHIG00000011018	UPF1	100	91.615	ENSAPOG00000023773	upf1	100	91.704	Acanthochromis_polyacanthus
ENSCHIG00000011018	UPF1	100	98.670	ENSAMEG00000011474	UPF1	100	98.670	Ailuropoda_melanoleuca
ENSCHIG00000011018	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSCHIG00000011018	UPF1	100	91.444	ENSACIG00000019949	upf1	100	91.793	Amphilophus_citrinellus
ENSCHIG00000011018	UPF1	100	92.934	ENSAOCG00000006352	-	100	92.934	Amphiprion_ocellaris
ENSCHIG00000011018	UPF1	100	91.129	ENSAOCG00000018519	upf1	100	91.696	Amphiprion_ocellaris
ENSCHIG00000011018	UPF1	100	91.129	ENSAPEG00000016344	upf1	100	91.696	Amphiprion_percula
ENSCHIG00000011018	UPF1	100	92.934	ENSAPEG00000006292	-	100	92.934	Amphiprion_percula
ENSCHIG00000011018	UPF1	100	90.300	ENSATEG00000017867	upf1	100	91.093	Anabas_testudineus
ENSCHIG00000011018	UPF1	100	93.023	ENSATEG00000016606	-	100	93.023	Anabas_testudineus
ENSCHIG00000011018	UPF1	94	98.291	ENSAPLG00000009175	UPF1	100	98.008	Anas_platyrhynchos
ENSCHIG00000011018	UPF1	95	97.116	ENSANAG00000024107	UPF1	97	97.116	Aotus_nancymaae
ENSCHIG00000011018	UPF1	100	91.176	ENSACLG00000007181	upf1	100	91.525	Astatotilapia_calliptera
ENSCHIG00000011018	UPF1	100	92.665	ENSACLG00000022630	-	100	92.576	Astatotilapia_calliptera
ENSCHIG00000011018	UPF1	100	93.387	ENSAMXG00000042187	upf1	100	93.834	Astyanax_mexicanus
ENSCHIG00000011018	UPF1	100	99.556	ENSBTAG00000020922	UPF1	100	99.556	Bos_taurus
ENSCHIG00000011018	UPF1	89	50.940	WBGene00004880	smg-2	99	48.205	Caenorhabditis_elegans
ENSCHIG00000011018	UPF1	100	98.760	ENSCJAG00000019627	UPF1	100	98.760	Callithrix_jacchus
ENSCHIG00000011018	UPF1	100	99.115	ENSCAFG00000014578	UPF1	100	99.115	Canis_familiaris
ENSCHIG00000011018	UPF1	100	99.553	ENSCAFG00020012347	UPF1	100	99.553	Canis_lupus_dingo
ENSCHIG00000011018	UPF1	96	97.776	ENSTSYG00000008877	UPF1	99	97.776	Carlito_syrichta
ENSCHIG00000011018	UPF1	93	98.573	ENSCAPG00000005758	UPF1	95	98.573	Cavia_aperea
ENSCHIG00000011018	UPF1	100	96.536	ENSCPOG00000025463	UPF1	100	96.536	Cavia_porcellus
ENSCHIG00000011018	UPF1	100	99.196	ENSCCAG00000032175	UPF1	100	99.196	Cebus_capucinus
ENSCHIG00000011018	UPF1	93	99.620	ENSCATG00000040306	UPF1	98	99.620	Cercocebus_atys
ENSCHIG00000011018	UPF1	96	97.963	ENSCLAG00000004037	UPF1	99	99.619	Chinchilla_lanigera
ENSCHIG00000011018	UPF1	100	99.106	ENSCSAG00000005276	UPF1	100	99.106	Chlorocebus_sabaeus
ENSCHIG00000011018	UPF1	100	97.408	ENSCPBG00000012513	UPF1	100	97.408	Chrysemys_picta_bellii
ENSCHIG00000011018	UPF1	78	78.416	ENSCING00000021399	-	99	78.416	Ciona_intestinalis
ENSCHIG00000011018	UPF1	99	72.099	ENSCSAVG00000006533	-	99	72.099	Ciona_savignyi
ENSCHIG00000011018	UPF1	95	98.785	ENSCANG00000029819	UPF1	99	98.785	Colobus_angolensis_palliatus
ENSCHIG00000011018	UPF1	100	98.656	ENSCGRG00001021067	Upf1	100	98.656	Cricetulus_griseus_chok1gshd
ENSCHIG00000011018	UPF1	96	97.307	ENSCGRG00000013480	Upf1	99	97.307	Cricetulus_griseus_crigri
ENSCHIG00000011018	UPF1	100	92.927	ENSCSEG00000016159	-	100	92.838	Cynoglossus_semilaevis
ENSCHIG00000011018	UPF1	100	86.404	ENSCSEG00000017239	upf1	100	86.494	Cynoglossus_semilaevis
ENSCHIG00000011018	UPF1	100	92.576	ENSCVAG00000010561	upf1	100	92.487	Cyprinodon_variegatus
ENSCHIG00000011018	UPF1	100	93.208	ENSDARG00000016302	upf1	100	93.655	Danio_rerio
ENSCHIG00000011018	UPF1	96	94.991	ENSDORG00000009984	Upf1	96	94.991	Dipodomys_ordii
ENSCHIG00000011018	UPF1	85	71.088	FBgn0030354	Upf1	84	67.562	Drosophila_melanogaster
ENSCHIG00000011018	UPF1	55	85.366	ENSEBUG00000010069	upf1	96	85.691	Eptatretus_burgeri
ENSCHIG00000011018	UPF1	100	99.642	ENSEASG00005006549	UPF1	100	99.642	Equus_asinus_asinus
ENSCHIG00000011018	UPF1	100	99.642	ENSECAG00000010639	UPF1	100	99.642	Equus_caballus
ENSCHIG00000011018	UPF1	100	90.747	ENSELUG00000020917	upf1	100	90.925	Esox_lucius
ENSCHIG00000011018	UPF1	100	92.000	ENSELUG00000012916	-	100	91.918	Esox_lucius
ENSCHIG00000011018	UPF1	100	99.027	ENSFCAG00000009757	UPF1	100	99.027	Felis_catus
ENSCHIG00000011018	UPF1	96	97.111	ENSFALG00000009312	UPF1	99	97.111	Ficedula_albicollis
ENSCHIG00000011018	UPF1	97	96.884	ENSFDAG00000014816	UPF1	99	99.524	Fukomys_damarensis
ENSCHIG00000011018	UPF1	85	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSCHIG00000011018	UPF1	100	88.642	ENSFHEG00000006428	upf1	100	88.642	Fundulus_heteroclitus
ENSCHIG00000011018	UPF1	100	91.408	ENSGMOG00000007541	upf1	100	91.851	Gadus_morhua
ENSCHIG00000011018	UPF1	100	97.766	ENSGALG00000003220	UPF1	100	97.766	Gallus_gallus
ENSCHIG00000011018	UPF1	100	92.480	ENSGAFG00000004831	upf1	100	92.390	Gambusia_affinis
ENSCHIG00000011018	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSCHIG00000011018	UPF1	100	97.583	ENSGAGG00000022217	UPF1	100	97.583	Gopherus_agassizii
ENSCHIG00000011018	UPF1	93	99.808	ENSGGOG00000002608	UPF1	99	99.808	Gorilla_gorilla
ENSCHIG00000011018	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCHIG00000011018	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCHIG00000011018	UPF1	100	98.229	ENSHGLG00000010900	UPF1	100	98.229	Heterocephalus_glaber_female
ENSCHIG00000011018	UPF1	96	95.409	ENSHGLG00100005904	UPF1	99	95.409	Heterocephalus_glaber_male
ENSCHIG00000011018	UPF1	100	91.943	ENSHCOG00000008918	upf1	100	94.004	Hippocampus_comes
ENSCHIG00000011018	UPF1	100	93.834	ENSIPUG00000005108	UPF1	100	94.191	Ictalurus_punctatus
ENSCHIG00000011018	UPF1	100	99.017	ENSSTOG00000009196	UPF1	100	99.017	Ictidomys_tridecemlineatus
ENSCHIG00000011018	UPF1	100	97.780	ENSJJAG00000023151	Upf1	100	97.780	Jaculus_jaculus
ENSCHIG00000011018	UPF1	100	92.934	ENSKMAG00000004962	upf1	100	92.844	Kryptolebias_marmoratus
ENSCHIG00000011018	UPF1	100	92.672	ENSLBEG00000027848	-	100	92.672	Labrus_bergylta
ENSCHIG00000011018	UPF1	100	89.664	ENSLBEG00000014862	upf1	100	90.813	Labrus_bergylta
ENSCHIG00000011018	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSCHIG00000011018	UPF1	100	95.345	ENSLOCG00000002072	upf1	100	95.345	Lepisosteus_oculatus
ENSCHIG00000011018	UPF1	100	98.230	ENSLAFG00000014963	UPF1	100	98.230	Loxodonta_africana
ENSCHIG00000011018	UPF1	100	98.760	ENSMFAG00000037748	UPF1	100	98.760	Macaca_fascicularis
ENSCHIG00000011018	UPF1	100	98.760	ENSMMUG00000023286	UPF1	100	98.760	Macaca_mulatta
ENSCHIG00000011018	UPF1	100	98.760	ENSMNEG00000000046	UPF1	100	98.760	Macaca_nemestrina
ENSCHIG00000011018	UPF1	93	99.810	ENSMLEG00000028404	UPF1	99	99.810	Mandrillus_leucophaeus
ENSCHIG00000011018	UPF1	100	90.035	ENSMAMG00000006229	upf1	100	91.005	Mastacembelus_armatus
ENSCHIG00000011018	UPF1	100	92.046	ENSMAMG00000006231	-	100	92.493	Mastacembelus_armatus
ENSCHIG00000011018	UPF1	100	92.665	ENSMZEG00005016386	-	100	92.576	Maylandia_zebra
ENSCHIG00000011018	UPF1	100	90.132	ENSMZEG00005003489	upf1	100	91.320	Maylandia_zebra
ENSCHIG00000011018	UPF1	93	97.909	ENSMGAG00000004745	UPF1	100	97.909	Meleagris_gallopavo
ENSCHIG00000011018	UPF1	95	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSCHIG00000011018	UPF1	100	99.017	ENSMICG00000001659	UPF1	100	99.017	Microcebus_murinus
ENSCHIG00000011018	UPF1	100	98.224	ENSMOCG00000005699	Upf1	100	98.224	Microtus_ochrogaster
ENSCHIG00000011018	UPF1	94	91.564	ENSMMOG00000007537	-	99	92.632	Mola_mola
ENSCHIG00000011018	UPF1	100	90.860	ENSMMOG00000007881	upf1	100	91.316	Mola_mola
ENSCHIG00000011018	UPF1	100	97.617	ENSMODG00000003689	UPF1	100	97.617	Monodelphis_domestica
ENSCHIG00000011018	UPF1	100	91.719	ENSMALG00000018100	-	100	91.719	Monopterus_albus
ENSCHIG00000011018	UPF1	100	91.129	ENSMALG00000000144	upf1	100	91.398	Monopterus_albus
ENSCHIG00000011018	UPF1	100	98.566	MGP_CAROLIEiJ_G0031142	Upf1	100	98.566	Mus_caroli
ENSCHIG00000011018	UPF1	100	98.566	ENSMUSG00000058301	Upf1	100	98.566	Mus_musculus
ENSCHIG00000011018	UPF1	100	98.566	MGP_PahariEiJ_G0021607	Upf1	100	98.566	Mus_pahari
ENSCHIG00000011018	UPF1	100	98.566	MGP_SPRETEiJ_G0032260	Upf1	100	98.566	Mus_spretus
ENSCHIG00000011018	UPF1	100	99.553	ENSMPUG00000015516	UPF1	100	99.553	Mustela_putorius_furo
ENSCHIG00000011018	UPF1	99	99.193	ENSMLUG00000012122	UPF1	99	99.193	Myotis_lucifugus
ENSCHIG00000011018	UPF1	100	97.959	ENSNGAG00000024107	Upf1	100	97.959	Nannospalax_galili
ENSCHIG00000011018	UPF1	100	89.301	ENSNBRG00000022069	-	100	93.975	Neolamprologus_brichardi
ENSCHIG00000011018	UPF1	100	89.483	ENSNBRG00000000670	upf1	100	89.831	Neolamprologus_brichardi
ENSCHIG00000011018	UPF1	93	94.006	ENSNLEG00000006062	UPF1	99	94.006	Nomascus_leucogenys
ENSCHIG00000011018	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSCHIG00000011018	UPF1	93	91.731	ENSOPRG00000014018	UPF1	99	91.731	Ochotona_princeps
ENSCHIG00000011018	UPF1	100	97.780	ENSODEG00000012426	UPF1	100	97.780	Octodon_degus
ENSCHIG00000011018	UPF1	100	90.396	ENSONIG00000010452	upf1	100	91.585	Oreochromis_niloticus
ENSCHIG00000011018	UPF1	100	92.755	ENSONIG00000012729	-	100	92.665	Oreochromis_niloticus
ENSCHIG00000011018	UPF1	100	96.652	ENSOANG00000004568	UPF1	100	96.652	Ornithorhynchus_anatinus
ENSCHIG00000011018	UPF1	100	92.844	ENSORLG00000008453	upf1	100	92.844	Oryzias_latipes
ENSCHIG00000011018	UPF1	100	92.761	ENSORLG00020014758	upf1	100	92.761	Oryzias_latipes_hni
ENSCHIG00000011018	UPF1	100	92.761	ENSORLG00015010165	upf1	100	92.761	Oryzias_latipes_hsok
ENSCHIG00000011018	UPF1	100	92.934	ENSOMEG00000003665	upf1	100	92.844	Oryzias_melastigma
ENSCHIG00000011018	UPF1	100	99.285	ENSOGAG00000012866	UPF1	100	99.285	Otolemur_garnettii
ENSCHIG00000011018	UPF1	96	97.606	ENSOARG00000010739	UPF1	100	97.606	Ovis_aries
ENSCHIG00000011018	UPF1	95	98.692	ENSPPAG00000043884	UPF1	97	98.692	Pan_paniscus
ENSCHIG00000011018	UPF1	100	99.027	ENSPPRG00000023470	UPF1	100	99.027	Panthera_pardus
ENSCHIG00000011018	UPF1	93	97.793	ENSPTIG00000010159	UPF1	99	97.793	Panthera_tigris_altaica
ENSCHIG00000011018	UPF1	100	98.760	ENSPTRG00000010721	UPF1	100	98.760	Pan_troglodytes
ENSCHIG00000011018	UPF1	100	98.760	ENSPANG00000008847	UPF1	100	98.760	Papio_anubis
ENSCHIG00000011018	UPF1	91	95.108	ENSPKIG00000006069	upf1	99	92.607	Paramormyrops_kingsleyae
ENSCHIG00000011018	UPF1	69	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSCHIG00000011018	UPF1	100	89.474	ENSPMGG00000017327	upf1	100	89.581	Periophthalmus_magnuspinnatus
ENSCHIG00000011018	UPF1	100	98.224	ENSPEMG00000001085	Upf1	100	98.224	Peromyscus_maniculatus_bairdii
ENSCHIG00000011018	UPF1	100	87.134	ENSPMAG00000001206	upf1	100	86.844	Petromyzon_marinus
ENSCHIG00000011018	UPF1	100	98.569	ENSPCIG00000006156	UPF1	100	98.569	Phascolarctos_cinereus
ENSCHIG00000011018	UPF1	100	92.569	ENSPLAG00000016232	-	100	92.480	Poecilia_latipinna
ENSCHIG00000011018	UPF1	100	89.618	ENSPLAG00000018155	-	100	89.530	Poecilia_latipinna
ENSCHIG00000011018	UPF1	100	92.487	ENSPMEG00000016319	-	100	92.397	Poecilia_mexicana
ENSCHIG00000011018	UPF1	100	90.170	ENSPMEG00000011443	-	100	90.080	Poecilia_mexicana
ENSCHIG00000011018	UPF1	100	90.062	ENSPREG00000009940	upf1	100	90.062	Poecilia_reticulata
ENSCHIG00000011018	UPF1	100	92.390	ENSPREG00000011247	-	100	92.301	Poecilia_reticulata
ENSCHIG00000011018	UPF1	100	93.800	ENSPPYG00000009752	UPF1	100	93.800	Pongo_abelii
ENSCHIG00000011018	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCHIG00000011018	UPF1	100	98.760	ENSPCOG00000023813	UPF1	100	98.760	Propithecus_coquereli
ENSCHIG00000011018	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCHIG00000011018	UPF1	100	92.665	ENSPNYG00000016731	-	100	92.576	Pundamilia_nyererei
ENSCHIG00000011018	UPF1	100	90.132	ENSPNYG00000003694	upf1	100	91.320	Pundamilia_nyererei
ENSCHIG00000011018	UPF1	100	93.387	ENSPNAG00000025614	upf1	100	93.834	Pygocentrus_nattereri
ENSCHIG00000011018	UPF1	100	98.566	ENSRNOG00000020134	Upf1	100	98.566	Rattus_norvegicus
ENSCHIG00000011018	UPF1	95	96.449	ENSRBIG00000013894	UPF1	98	99.671	Rhinopithecus_bieti
ENSCHIG00000011018	UPF1	95	98.785	ENSRROG00000040935	UPF1	99	98.785	Rhinopithecus_roxellana
ENSCHIG00000011018	UPF1	72	57.108	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSCHIG00000011018	UPF1	97	97.250	ENSSBOG00000023632	UPF1	99	97.250	Saimiri_boliviensis_boliviensis
ENSCHIG00000011018	UPF1	93	99.050	ENSSHAG00000010499	UPF1	100	99.050	Sarcophilus_harrisii
ENSCHIG00000011018	UPF1	100	95.259	ENSSFOG00015021095	upf1	99	97.315	Scleropages_formosus
ENSCHIG00000011018	UPF1	100	89.311	ENSSMAG00000005055	upf1	100	90.115	Scophthalmus_maximus
ENSCHIG00000011018	UPF1	100	92.761	ENSSMAG00000021018	-	100	92.761	Scophthalmus_maximus
ENSCHIG00000011018	UPF1	100	93.029	ENSSDUG00000009629	-	100	93.029	Seriola_dumerili
ENSCHIG00000011018	UPF1	100	90.300	ENSSDUG00000013320	upf1	100	91.270	Seriola_dumerili
ENSCHIG00000011018	UPF1	100	91.103	ENSSLDG00000020868	upf1	100	91.563	Seriola_lalandi_dorsalis
ENSCHIG00000011018	UPF1	100	93.029	ENSSLDG00000006878	-	100	93.029	Seriola_lalandi_dorsalis
ENSCHIG00000011018	UPF1	100	97.230	ENSSPUG00000010538	UPF1	100	97.230	Sphenodon_punctatus
ENSCHIG00000011018	UPF1	100	93.017	ENSSPAG00000011521	-	100	92.927	Stegastes_partitus
ENSCHIG00000011018	UPF1	100	89.615	ENSSPAG00000000003	upf1	100	89.554	Stegastes_partitus
ENSCHIG00000011018	UPF1	100	99.910	ENSSSCG00000039301	UPF1	100	99.910	Sus_scrofa
ENSCHIG00000011018	UPF1	83	90.106	ENSTGUG00000001057	UPF1	100	95.280	Taeniopygia_guttata
ENSCHIG00000011018	UPF1	100	90.771	ENSTRUG00000000150	upf1	100	90.771	Takifugu_rubripes
ENSCHIG00000011018	UPF1	100	91.853	ENSTRUG00000005131	-	100	91.853	Takifugu_rubripes
ENSCHIG00000011018	UPF1	100	96.057	ENSTTRG00000011544	UPF1	100	96.057	Tursiops_truncatus
ENSCHIG00000011018	UPF1	100	99.464	ENSUAMG00000007093	UPF1	100	99.464	Ursus_americanus
ENSCHIG00000011018	UPF1	96	98.239	ENSUMAG00000006652	UPF1	99	100.000	Ursus_maritimus
ENSCHIG00000011018	UPF1	100	99.553	ENSVVUG00000007797	UPF1	100	99.553	Vulpes_vulpes
ENSCHIG00000011018	UPF1	100	82.555	ENSXETG00000013602	upf1	100	82.291	Xenopus_tropicalis
ENSCHIG00000011018	UPF1	97	90.000	ENSXCOG00000015275	-	96	89.907	Xiphophorus_couchianus
ENSCHIG00000011018	UPF1	92	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSCHIG00000011018	UPF1	100	90.242	ENSXMAG00000001703	-	100	90.152	Xiphophorus_maculatus
ENSCHIG00000011018	UPF1	100	92.308	ENSXMAG00000002540	-	100	92.218	Xiphophorus_maculatus