EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000011454 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 1347 bases
Position: chr18:1404136-1405482
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000008188	Smg4_UPF3	PF03467.15	1.9e-25	1	2
ENSCHIP00000008188	Smg4_UPF3	PF03467.15	1.9e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000015945	-	1200	-	ENSCHIP00000008188	399 (aa)	-	UPI000D19493D

Gene Model

Click here to download ENSCHIG00000011454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000011454's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000011454	-	89	35.593	ENSCHIG00000008682	UPF3A	81	38.257
ENSCHIG00000011454	-	92	63.470	ENSCHIG00000000247	-	91	65.068
ENSCHIG00000011454	-	89	62.763	ENSCHIG00000018011	-	85	71.053

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000011454	-	84	38.619	ENSG00000169062	UPF3A	84	39.750	Homo_sapiens
ENSCHIG00000011454	-	92	62.824	ENSG00000125351	UPF3B	90	64.706	Homo_sapiens
ENSCHIG00000011454	-	87	37.772	ENSAPOG00000012775	upf3b	92	40.047	Acanthochromis_polyacanthus
ENSCHIG00000011454	-	98	62.667	ENSAMEG00000000163	UPF3B	90	65.176	Ailuropoda_melanoleuca
ENSCHIG00000011454	-	92	35.814	ENSAMEG00000004259	UPF3A	88	38.119	Ailuropoda_melanoleuca
ENSCHIG00000011454	-	51	47.881	ENSAPEG00000005545	upf3b	92	40.898	Amphiprion_percula
ENSCHIG00000011454	-	84	39.409	ENSATEG00000018742	upf3b	93	40.783	Anabas_testudineus
ENSCHIG00000011454	-	90	46.336	ENSACAG00000003625	UPF3B	91	48.227	Anolis_carolinensis
ENSCHIG00000011454	-	85	39.440	ENSACAG00000001540	UPF3A	94	41.476	Anolis_carolinensis
ENSCHIG00000011454	-	84	37.500	ENSANAG00000021713	UPF3A	84	39.401	Aotus_nancymaae
ENSCHIG00000011454	-	92	61.190	ENSANAG00000025598	-	72	81.250	Aotus_nancymaae
ENSCHIG00000011454	-	56	53.036	ENSANAG00000033169	-	78	57.547	Aotus_nancymaae
ENSCHIG00000011454	-	92	63.529	ENSANAG00000021894	-	86	73.469	Aotus_nancymaae
ENSCHIG00000011454	-	50	48.069	ENSACLG00000001649	upf3b	92	40.995	Astatotilapia_calliptera
ENSCHIG00000011454	-	58	68.421	ENSBTAG00000035615	UPF3B	85	68.750	Bos_taurus
ENSCHIG00000011454	-	92	63.529	ENSCJAG00000004975	UPF3B	86	73.469	Callithrix_jacchus
ENSCHIG00000011454	-	84	37.150	ENSCJAG00000019102	UPF3A	56	47.529	Callithrix_jacchus
ENSCHIG00000011454	-	89	36.429	ENSCAFG00000006504	UPF3A	50	49.784	Canis_familiaris
ENSCHIG00000011454	-	95	60.667	ENSCAFG00000018426	UPF3B	90	64.563	Canis_familiaris
ENSCHIG00000011454	-	95	60.970	ENSCAFG00020004074	UPF3B	90	63.723	Canis_lupus_dingo
ENSCHIG00000011454	-	69	32.609	ENSTSYG00000001918	UPF3A	87	34.848	Carlito_syrichta
ENSCHIG00000011454	-	92	63.357	ENSTSYG00000014690	UPF3B	86	73.469	Carlito_syrichta
ENSCHIG00000011454	-	90	45.946	ENSCCAG00000029813	-	88	46.524	Cebus_capucinus
ENSCHIG00000011454	-	84	37.340	ENSCCAG00000018406	UPF3A	84	38.500	Cebus_capucinus
ENSCHIG00000011454	-	92	62.824	ENSCATG00000017506	UPF3B	86	73.469	Cercocebus_atys
ENSCHIG00000011454	-	84	38.325	ENSCATG00000029733	UPF3A	84	38.861	Cercocebus_atys
ENSCHIG00000011454	-	98	61.111	ENSCLAG00000003260	UPF3B	90	64.000	Chinchilla_lanigera
ENSCHIG00000011454	-	84	38.000	ENSCSAG00000017388	UPF3A	84	38.537	Chlorocebus_sabaeus
ENSCHIG00000011454	-	92	61.187	ENSCSAG00000018348	UPF3B	91	62.785	Chlorocebus_sabaeus
ENSCHIG00000011454	-	91	45.412	ENSCPBG00000020685	UPF3B	92	47.183	Chrysemys_picta_bellii
ENSCHIG00000011454	-	61	73.469	ENSCANG00000029220	UPF3B	86	73.469	Colobus_angolensis_palliatus
ENSCHIG00000011454	-	68	62.581	ENSCGRG00001013643	-	83	62.295	Cricetulus_griseus_chok1gshd
ENSCHIG00000011454	-	98	56.291	ENSCGRG00001006858	-	90	60.422	Cricetulus_griseus_chok1gshd
ENSCHIG00000011454	-	90	56.905	ENSCGRG00000007627	Upf3b	100	60.238	Cricetulus_griseus_crigri
ENSCHIG00000011454	-	83	39.599	ENSCSEG00000002046	upf3b	84	42.000	Cynoglossus_semilaevis
ENSCHIG00000011454	-	84	39.901	ENSDARG00000000489	upf3b	87	41.872	Danio_rerio
ENSCHIG00000011454	-	98	59.179	ENSDNOG00000008665	UPF3B	91	60.959	Dasypus_novemcinctus
ENSCHIG00000011454	-	76	40.643	ENSDNOG00000034391	UPF3A	60	46.970	Dasypus_novemcinctus
ENSCHIG00000011454	-	92	57.920	ENSDORG00000006077	Upf3b	90	61.229	Dipodomys_ordii
ENSCHIG00000011454	-	86	35.556	ENSETEG00000010110	UPF3A	86	38.741	Echinops_telfairi
ENSCHIG00000011454	-	92	63.723	ENSEASG00005012919	UPF3B	90	64.286	Equus_asinus_asinus
ENSCHIG00000011454	-	91	38.242	ENSEASG00005021884	UPF3A	83	40.816	Equus_asinus_asinus
ENSCHIG00000011454	-	92	63.723	ENSECAG00000016947	UPF3B	90	64.286	Equus_caballus
ENSCHIG00000011454	-	91	38.480	ENSECAG00000017141	UPF3A	83	40.554	Equus_caballus
ENSCHIG00000011454	-	53	50.826	ENSELUG00000020389	upf3b	54	49.615	Esox_lucius
ENSCHIG00000011454	-	92	62.529	ENSFCAG00000004388	UPF3B	90	64.403	Felis_catus
ENSCHIG00000011454	-	84	34.615	ENSFCAG00000014602	UPF3A	82	36.667	Felis_catus
ENSCHIG00000011454	-	97	43.096	ENSFALG00000001569	UPF3B	89	47.439	Ficedula_albicollis
ENSCHIG00000011454	-	98	59.645	ENSFDAG00000018869	UPF3B	90	62.824	Fukomys_damarensis
ENSCHIG00000011454	-	84	37.778	ENSGMOG00000001621	upf3b	88	40.436	Gadus_morhua
ENSCHIG00000011454	-	91	47.086	ENSGALG00000008618	UPF3B	89	50.350	Gallus_gallus
ENSCHIG00000011454	-	81	39.250	ENSGACG00000017435	upf3b	89	42.029	Gasterosteus_aculeatus
ENSCHIG00000011454	-	91	47.674	ENSGAGG00000001219	UPF3B	92	49.302	Gopherus_agassizii
ENSCHIG00000011454	-	86	35.106	ENSGGOG00000041219	-	88	35.450	Gorilla_gorilla
ENSCHIG00000011454	-	84	38.131	ENSGGOG00000015428	UPF3A	84	39.259	Gorilla_gorilla
ENSCHIG00000011454	-	92	62.824	ENSGGOG00000023995	UPF3B	86	73.469	Gorilla_gorilla
ENSCHIG00000011454	-	83	35.616	ENSGGOG00000043074	-	81	35.262	Gorilla_gorilla
ENSCHIG00000011454	-	50	48.069	ENSHBUG00000017393	upf3b	92	40.995	Haplochromis_burtoni
ENSCHIG00000011454	-	56	42.800	ENSHGLG00000001544	UPF3A	55	47.391	Heterocephalus_glaber_female
ENSCHIG00000011454	-	81	58.967	ENSHGLG00000011189	-	82	61.224	Heterocephalus_glaber_female
ENSCHIG00000011454	-	98	60.889	ENSHGLG00000019582	-	90	63.294	Heterocephalus_glaber_female
ENSCHIG00000011454	-	56	42.800	ENSHGLG00100013244	UPF3A	55	47.391	Heterocephalus_glaber_male
ENSCHIG00000011454	-	98	60.317	ENSHGLG00100002042	-	90	63.043	Heterocephalus_glaber_male
ENSCHIG00000011454	-	81	59.615	ENSHGLG00100001889	-	82	61.947	Heterocephalus_glaber_male
ENSCHIG00000011454	-	84	39.646	ENSHCOG00000017004	upf3b	86	41.457	Hippocampus_comes
ENSCHIG00000011454	-	90	39.907	ENSIPUG00000019249	upf3b	92	40.371	Ictalurus_punctatus
ENSCHIG00000011454	-	98	60.667	ENSSTOG00000001101	UPF3B	90	62.824	Ictidomys_tridecemlineatus
ENSCHIG00000011454	-	98	57.616	ENSJJAG00000000053	Upf3b	90	61.593	Jaculus_jaculus
ENSCHIG00000011454	-	51	49.576	ENSLBEG00000028689	upf3b	55	49.004	Labrus_bergylta
ENSCHIG00000011454	-	84	40.541	ENSLACG00000008691	UPF3B	87	47.317	Latimeria_chalumnae
ENSCHIG00000011454	-	51	50.000	ENSLOCG00000015238	upf3b	92	42.584	Lepisosteus_oculatus
ENSCHIG00000011454	-	91	39.243	ENSLOCG00000002665	upf3a	90	39.573	Lepisosteus_oculatus
ENSCHIG00000011454	-	92	61.882	ENSLAFG00000001267	UPF3B	90	63.059	Loxodonta_africana
ENSCHIG00000011454	-	92	62.588	ENSMFAG00000045414	UPF3B	86	73.469	Macaca_fascicularis
ENSCHIG00000011454	-	87	35.427	ENSMFAG00000045016	UPF3A	85	37.288	Macaca_fascicularis
ENSCHIG00000011454	-	92	62.588	ENSMMUG00000020222	UPF3B	86	73.469	Macaca_mulatta
ENSCHIG00000011454	-	81	37.632	ENSMMUG00000007449	UPF3A	86	38.000	Macaca_mulatta
ENSCHIG00000011454	-	86	37.250	ENSMNEG00000036402	UPF3A	81	38.155	Macaca_nemestrina
ENSCHIG00000011454	-	92	62.588	ENSMNEG00000039794	UPF3B	86	73.469	Macaca_nemestrina
ENSCHIG00000011454	-	86	37.000	ENSMLEG00000014726	UPF3A	91	37.905	Mandrillus_leucophaeus
ENSCHIG00000011454	-	92	62.824	ENSMLEG00000010999	UPF3B	86	73.469	Mandrillus_leucophaeus
ENSCHIG00000011454	-	50	48.069	ENSMZEG00005007871	upf3b	92	40.995	Maylandia_zebra
ENSCHIG00000011454	-	80	42.931	ENSMGAG00000007728	UPF3B	92	49.304	Meleagris_gallopavo
ENSCHIG00000011454	-	83	35.476	ENSMGAG00000014837	UPF3A	97	38.974	Meleagris_gallopavo
ENSCHIG00000011454	-	98	55.211	ENSMAUG00000008705	Upf3b	90	59.242	Mesocricetus_auratus
ENSCHIG00000011454	-	61	71.429	ENSMICG00000001743	UPF3B	86	71.429	Microcebus_murinus
ENSCHIG00000011454	-	98	54.701	ENSMOCG00000017893	Upf3b	91	57.991	Microtus_ochrogaster
ENSCHIG00000011454	-	90	50.824	ENSMODG00000010232	UPF3B	99	52.235	Monodelphis_domestica
ENSCHIG00000011454	-	88	37.192	ENSMODG00000003159	UPF3A	98	39.762	Monodelphis_domestica
ENSCHIG00000011454	-	50	47.639	ENSMALG00000008042	upf3b	94	40.275	Monopterus_albus
ENSCHIG00000011454	-	99	55.556	MGP_CAROLIEiJ_G0032999	Upf3b	100	61.776	Mus_caroli
ENSCHIG00000011454	-	74	39.130	MGP_CAROLIEiJ_G0030848	Upf3a	65	45.091	Mus_caroli
ENSCHIG00000011454	-	99	55.556	ENSMUSG00000036572	Upf3b	99	61.776	Mus_musculus
ENSCHIG00000011454	-	99	55.120	MGP_PahariEiJ_G0031543	Upf3b	100	61.004	Mus_pahari
ENSCHIG00000011454	-	99	55.556	MGP_SPRETEiJ_G0034152	Upf3b	100	61.776	Mus_spretus
ENSCHIG00000011454	-	89	63.107	ENSMPUG00000001531	UPF3B	90	64.078	Mustela_putorius_furo
ENSCHIG00000011454	-	88	36.228	ENSMPUG00000009139	UPF3A	85	37.653	Mustela_putorius_furo
ENSCHIG00000011454	-	83	38.931	ENSMLUG00000015905	UPF3A	93	40.967	Myotis_lucifugus
ENSCHIG00000011454	-	92	63.294	ENSMLUG00000010821	UPF3B	90	64.471	Myotis_lucifugus
ENSCHIG00000011454	-	81	37.119	ENSNGAG00000019314	Upf3a	54	48.261	Nannospalax_galili
ENSCHIG00000011454	-	98	54.705	ENSNGAG00000008231	Upf3b	90	59.906	Nannospalax_galili
ENSCHIG00000011454	-	84	38.107	ENSNLEG00000007563	UPF3A	84	39.250	Nomascus_leucogenys
ENSCHIG00000011454	-	92	63.059	ENSNLEG00000014897	UPF3B	91	64.941	Nomascus_leucogenys
ENSCHIG00000011454	-	64	63.226	ENSMEUG00000015615	UPF3B	79	62.712	Notamacropus_eugenii
ENSCHIG00000011454	-	98	58.636	ENSODEG00000002186	-	90	62.740	Octodon_degus
ENSCHIG00000011454	-	50	50.211	ENSONIG00000002536	upf3b	89	42.512	Oreochromis_niloticus
ENSCHIG00000011454	-	73	34.161	ENSOANG00000006985	-	55	45.581	Ornithorhynchus_anatinus
ENSCHIG00000011454	-	89	46.154	ENSOANG00000002594	-	99	45.139	Ornithorhynchus_anatinus
ENSCHIG00000011454	-	98	60.345	ENSOCUG00000010213	UPF3B	91	63.014	Oryctolagus_cuniculus
ENSCHIG00000011454	-	85	38.168	ENSORLG00000010911	upf3a	83	38.945	Oryzias_latipes
ENSCHIG00000011454	-	85	38.144	ENSORLG00020014317	upf3a	82	39.186	Oryzias_latipes_hni
ENSCHIG00000011454	-	97	53.468	ENSOGAG00000033003	-	90	56.145	Otolemur_garnettii
ENSCHIG00000011454	-	99	61.488	ENSOGAG00000004643	-	90	64.471	Otolemur_garnettii
ENSCHIG00000011454	-	90	35.782	ENSOARG00000009004	UPF3A	83	38.875	Ovis_aries
ENSCHIG00000011454	-	92	62.812	ENSOARG00000016051	-	91	64.626	Ovis_aries
ENSCHIG00000011454	-	92	79.597	ENSOARG00000007869	-	100	79.597	Ovis_aries
ENSCHIG00000011454	-	92	62.824	ENSPPAG00000040390	UPF3B	86	73.469	Pan_paniscus
ENSCHIG00000011454	-	84	38.107	ENSPPAG00000042267	UPF3A	84	39.250	Pan_paniscus
ENSCHIG00000011454	-	84	34.663	ENSPPRG00000025062	UPF3A	83	36.432	Panthera_pardus
ENSCHIG00000011454	-	92	60.890	ENSPPRG00000023536	UPF3B	90	64.706	Panthera_pardus
ENSCHIG00000011454	-	92	58.998	ENSPTIG00000015264	UPF3B	86	69.388	Panthera_tigris_altaica
ENSCHIG00000011454	-	86	33.333	ENSPTRG00000041187	-	88	35.185	Pan_troglodytes
ENSCHIG00000011454	-	92	62.824	ENSPTRG00000022228	UPF3B	86	73.469	Pan_troglodytes
ENSCHIG00000011454	-	84	38.107	ENSPTRG00000006073	UPF3A	84	39.250	Pan_troglodytes
ENSCHIG00000011454	-	86	33.154	ENSPTRG00000041835	-	88	33.514	Pan_troglodytes
ENSCHIG00000011454	-	92	62.824	ENSPANG00000000900	UPF3B	86	73.469	Papio_anubis
ENSCHIG00000011454	-	89	37.440	ENSPANG00000004346	UPF3A	84	38.614	Papio_anubis
ENSCHIG00000011454	-	91	39.815	ENSPKIG00000019226	upf3b	94	41.492	Paramormyrops_kingsleyae
ENSCHIG00000011454	-	81	38.522	ENSPSIG00000007468	UPF3A	93	42.216	Pelodiscus_sinensis
ENSCHIG00000011454	-	98	56.608	ENSPEMG00000012352	Upf3b	90	60.748	Peromyscus_maniculatus_bairdii
ENSCHIG00000011454	-	91	48.235	ENSPCIG00000028914	UPF3B	89	50.356	Phascolarctos_cinereus
ENSCHIG00000011454	-	51	44.749	ENSPCIG00000019590	-	69	50.633	Phascolarctos_cinereus
ENSCHIG00000011454	-	61	73.469	ENSPPYG00000020675	-	82	73.469	Pongo_abelii
ENSCHIG00000011454	-	84	38.363	ENSPPYG00000005536	UPF3A	84	39.500	Pongo_abelii
ENSCHIG00000011454	-	98	59.827	ENSPCAG00000009464	UPF3B	91	61.416	Procavia_capensis
ENSCHIG00000011454	-	92	62.207	ENSPCOG00000021960	UPF3B	86	71.429	Propithecus_coquereli
ENSCHIG00000011454	-	92	49.315	ENSPVAG00000014075	UPF3B	91	52.740	Pteropus_vampyrus
ENSCHIG00000011454	-	83	35.052	ENSPVAG00000005656	UPF3A	62	41.497	Pteropus_vampyrus
ENSCHIG00000011454	-	50	48.069	ENSPNYG00000009846	upf3b	92	40.855	Pundamilia_nyererei
ENSCHIG00000011454	-	91	39.636	ENSPNAG00000021528	upf3b	95	40.547	Pygocentrus_nattereri
ENSCHIG00000011454	-	98	56.291	ENSRNOG00000039994	Upf3b	90	60.890	Rattus_norvegicus
ENSCHIG00000011454	-	77	63.277	ENSRBIG00000037219	UPF3B	92	65.537	Rhinopithecus_bieti
ENSCHIG00000011454	-	85	38.182	ENSRBIG00000034007	UPF3A	53	50.216	Rhinopithecus_bieti
ENSCHIG00000011454	-	92	62.824	ENSRROG00000041031	UPF3B	86	73.469	Rhinopithecus_roxellana
ENSCHIG00000011454	-	83	38.462	ENSRROG00000012212	UPF3A	80	40.053	Rhinopithecus_roxellana
ENSCHIG00000011454	-	92	63.294	ENSSBOG00000019740	UPF3B	86	73.469	Saimiri_boliviensis_boliviensis
ENSCHIG00000011454	-	76	32.258	ENSSBOG00000029989	UPF3A	77	35.777	Saimiri_boliviensis_boliviensis
ENSCHIG00000011454	-	88	36.118	ENSSHAG00000009895	UPF3A	96	39.312	Sarcophilus_harrisii
ENSCHIG00000011454	-	85	51.613	ENSSHAG00000008634	UPF3B	84	53.102	Sarcophilus_harrisii
ENSCHIG00000011454	-	86	42.579	ENSSFOG00015005614	upf3b	91	43.614	Scleropages_formosus
ENSCHIG00000011454	-	83	39.259	ENSSMAG00000012913	upf3b	85	41.294	Scophthalmus_maximus
ENSCHIG00000011454	-	50	47.186	ENSSDUG00000005682	upf3b	92	39.671	Seriola_dumerili
ENSCHIG00000011454	-	86	37.288	ENSSLDG00000003130	upf3b	92	39.671	Seriola_lalandi_dorsalis
ENSCHIG00000011454	-	81	32.723	ENSSARG00000007262	UPF3A	54	47.297	Sorex_araneus
ENSCHIG00000011454	-	90	55.787	ENSSARG00000004147	UPF3B	100	58.333	Sorex_araneus
ENSCHIG00000011454	-	97	41.009	ENSSPUG00000013082	UPF3B	90	45.455	Sphenodon_punctatus
ENSCHIG00000011454	-	51	50.424	ENSSPAG00000009989	upf3b	90	40.678	Stegastes_partitus
ENSCHIG00000011454	-	92	64.706	ENSSSCG00000012617	UPF3B	90	65.882	Sus_scrofa
ENSCHIG00000011454	-	76	37.356	ENSSSCG00000024679	UPF3A	66	46.296	Sus_scrofa
ENSCHIG00000011454	-	90	46.479	ENSTGUG00000003413	UPF3B	99	49.061	Taeniopygia_guttata
ENSCHIG00000011454	-	83	39.221	ENSTGUG00000009493	UPF3A	98	42.597	Taeniopygia_guttata
ENSCHIG00000011454	-	87	41.119	ENSTRUG00000010645	upf3b	92	42.271	Takifugu_rubripes
ENSCHIG00000011454	-	90	40.000	ENSTNIG00000015763	upf3b	93	40.821	Tetraodon_nigroviridis
ENSCHIG00000011454	-	84	33.943	ENSTNIG00000014973	upf3a	98	34.574	Tetraodon_nigroviridis
ENSCHIG00000011454	-	92	46.396	ENSTBEG00000003229	UPF3B	79	57.233	Tupaia_belangeri
ENSCHIG00000011454	-	69	33.654	ENSTTRG00000015414	UPF3A	65	35.577	Tursiops_truncatus
ENSCHIG00000011454	-	92	59.434	ENSUAMG00000024565	UPF3B	72	81.250	Ursus_americanus
ENSCHIG00000011454	-	91	58.670	ENSUMAG00000002150	UPF3B	91	61.483	Ursus_maritimus
ENSCHIG00000011454	-	85	61.369	ENSVPAG00000009971	UPF3B	99	62.836	Vicugna_pacos
ENSCHIG00000011454	-	82	36.292	ENSVVUG00000013538	UPF3A	77	38.342	Vulpes_vulpes
ENSCHIG00000011454	-	92	62.053	ENSVVUG00000011594	UPF3B	90	63.962	Vulpes_vulpes
ENSCHIG00000011454	-	83	38.281	ENSXETG00000002572	upf3a	90	36.316	Xenopus_tropicalis
ENSCHIG00000011454	-	87	41.667	ENSXETG00000007440	upf3b	80	59.783	Xenopus_tropicalis
ENSCHIG00000011454	-	91	37.757	ENSXMAG00000013680	upf3b	87	40.909	Xiphophorus_maculatus