EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000011898 (Gene tree)
Gene ID: 102181846
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 5494 bases
Position: chr5:100002942-100008435
Accession: 102181846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000008849	APOBEC_N	PF08210.11	8.9e-29	1	1
ENSCHIP00000008846	APOBEC_N	PF08210.11	1.6e-23	1	1
ENSCHIP00000008849	APOBEC_C	PF05240.14	1.6e-22	1	1
ENSCHIP00000008846	APOBEC_C	PF05240.14	2.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000016613	APOBEC1-202	726	XM_018048507	ENSCHIP00000008849	241 (aa)	XP_017903996	UPI000D191667
ENSCHIT00000016610	APOBEC1-201	699	-	ENSCHIP00000008846	232 (aa)	-	UPI000D1978BB

Gene Model

Click here to download ENSCHIG00000011898's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000011898's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000011898	APOBEC1	56	37.624	ENSCHIG00000026580	-	61	37.624
ENSCHIG00000011898	APOBEC1	51	34.109	ENSCHIG00000012409	AICDA	65	34.109

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000011898	APOBEC1	96	73.160	ENSG00000111701	APOBEC1	98	73.160	Homo_sapiens
ENSCHIG00000011898	APOBEC1	98	74.576	ENSAMEG00000007098	APOBEC1	100	74.576	Ailuropoda_melanoleuca
ENSCHIG00000011898	APOBEC1	76	37.430	ENSACAG00000028578	-	98	37.430	Anolis_carolinensis
ENSCHIG00000011898	APOBEC1	96	75.758	ENSANAG00000027743	APOBEC1	93	75.758	Aotus_nancymaae
ENSCHIG00000011898	APOBEC1	96	90.476	ENSBTAG00000014683	APOBEC1	98	90.476	Bos_taurus
ENSCHIG00000011898	APOBEC1	92	74.208	ENSCJAG00000005398	APOBEC1	100	74.208	Callithrix_jacchus
ENSCHIG00000011898	APOBEC1	96	73.593	ENSCAFG00000013901	APOBEC1	98	73.593	Canis_familiaris
ENSCHIG00000011898	APOBEC1	94	72.566	ENSCAFG00020003511	APOBEC1	95	72.566	Canis_lupus_dingo
ENSCHIG00000011898	APOBEC1	58	72.143	ENSTSYG00000029141	APOBEC1	99	72.143	Carlito_syrichta
ENSCHIG00000011898	APOBEC1	93	60.930	ENSCAPG00000015882	-	100	63.256	Cavia_aperea
ENSCHIG00000011898	APOBEC1	96	61.638	ENSCPOG00000033068	APOBEC1	98	61.638	Cavia_porcellus
ENSCHIG00000011898	APOBEC1	96	75.758	ENSCCAG00000022258	APOBEC1	98	75.758	Cebus_capucinus
ENSCHIG00000011898	APOBEC1	96	75.325	ENSCATG00000021613	APOBEC1	93	75.325	Cercocebus_atys
ENSCHIG00000011898	APOBEC1	93	64.732	ENSCLAG00000014645	APOBEC1	97	64.732	Chinchilla_lanigera
ENSCHIG00000011898	APOBEC1	79	76.842	ENSCSAG00000009817	APOBEC1	99	76.842	Chlorocebus_sabaeus
ENSCHIG00000011898	APOBEC1	95	38.889	ENSCPBG00000017398	-	98	38.889	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	86	42.574	ENSCPBG00000014328	-	86	44.949	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	83	47.291	ENSCPBG00000014329	-	56	47.291	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	89	38.889	ENSCPBG00000014327	-	84	38.889	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	95	37.607	ENSCPBG00000014331	-	94	37.607	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	78	48.421	ENSCPBG00000014335	-	77	48.421	Chrysemys_picta_bellii
ENSCHIG00000011898	APOBEC1	95	74.348	ENSCANG00000038359	APOBEC1	100	74.348	Colobus_angolensis_palliatus
ENSCHIG00000011898	APOBEC1	95	65.502	ENSCGRG00001011130	Apobec1	100	65.502	Cricetulus_griseus_chok1gshd
ENSCHIG00000011898	APOBEC1	95	65.502	ENSCGRG00000008644	Apobec1	100	65.502	Cricetulus_griseus_crigri
ENSCHIG00000011898	APOBEC1	96	71.552	ENSDNOG00000010926	APOBEC1	98	71.552	Dasypus_novemcinctus
ENSCHIG00000011898	APOBEC1	88	63.551	ENSDORG00000023717	Apobec1	100	63.551	Dipodomys_ordii
ENSCHIG00000011898	APOBEC1	95	70.435	ENSETEG00000004867	APOBEC1	97	70.435	Echinops_telfairi
ENSCHIG00000011898	APOBEC1	99	78.151	ENSEASG00005015951	APOBEC1	100	78.151	Equus_asinus_asinus
ENSCHIG00000011898	APOBEC1	79	80.000	ENSECAG00000017163	APOBEC1	99	80.000	Equus_caballus
ENSCHIG00000011898	APOBEC1	94	59.361	ENSEEUG00000009112	-	98	62.273	Erinaceus_europaeus
ENSCHIG00000011898	APOBEC1	88	50.490	ENSEEUG00000007530	-	97	53.431	Erinaceus_europaeus
ENSCHIG00000011898	APOBEC1	96	74.892	ENSFCAG00000009350	APOBEC1	98	74.892	Felis_catus
ENSCHIG00000011898	APOBEC1	62	45.517	ENSFALG00000007257	-	71	45.517	Ficedula_albicollis
ENSCHIG00000011898	APOBEC1	89	50.242	ENSFDAG00000018470	APOBEC1	99	53.140	Fukomys_damarensis
ENSCHIG00000011898	APOBEC1	89	39.070	ENSGAGG00000021744	-	84	39.070	Gopherus_agassizii
ENSCHIG00000011898	APOBEC1	94	35.426	ENSGAGG00000021745	-	78	37.838	Gopherus_agassizii
ENSCHIG00000011898	APOBEC1	74	45.087	ENSGAGG00000004947	-	82	47.287	Gopherus_agassizii
ENSCHIG00000011898	APOBEC1	78	42.623	ENSGAGG00000006624	-	63	45.604	Gopherus_agassizii
ENSCHIG00000011898	APOBEC1	89	47.143	ENSGAGG00000011837	-	88	50.000	Gopherus_agassizii
ENSCHIG00000011898	APOBEC1	95	60.870	ENSHGLG00000001495	APOBEC1	97	60.870	Heterocephalus_glaber_female
ENSCHIG00000011898	APOBEC1	95	59.565	ENSHGLG00100002187	APOBEC1	97	59.565	Heterocephalus_glaber_male
ENSCHIG00000011898	APOBEC1	93	56.279	ENSSTOG00000021971	APOBEC1	100	74.490	Ictidomys_tridecemlineatus
ENSCHIG00000011898	APOBEC1	93	70.536	ENSJJAG00000022108	Apobec1	98	70.536	Jaculus_jaculus
ENSCHIG00000011898	APOBEC1	93	71.749	ENSLAFG00000030837	APOBEC1	100	71.749	Loxodonta_africana
ENSCHIG00000011898	APOBEC1	96	75.758	ENSMFAG00000000277	APOBEC1	99	77.368	Macaca_fascicularis
ENSCHIG00000011898	APOBEC1	96	75.325	ENSMNEG00000029670	APOBEC1	98	75.325	Macaca_nemestrina
ENSCHIG00000011898	APOBEC1	96	75.325	ENSMLEG00000036301	APOBEC1	98	75.325	Mandrillus_leucophaeus
ENSCHIG00000011898	APOBEC1	90	66.204	ENSMAUG00000022167	Apobec1	97	66.204	Mesocricetus_auratus
ENSCHIG00000011898	APOBEC1	96	72.294	ENSMICG00000043645	APOBEC1	98	72.294	Microcebus_murinus
ENSCHIG00000011898	APOBEC1	96	62.931	ENSMODG00000018004	APOBEC1	98	62.931	Monodelphis_domestica
ENSCHIG00000011898	APOBEC1	95	65.351	ENSMUSG00000040613	Apobec1	99	65.351	Mus_musculus
ENSCHIG00000011898	APOBEC1	95	65.789	MGP_PahariEiJ_G0022580	-	99	65.789	Mus_pahari
ENSCHIG00000011898	APOBEC1	95	65.351	MGP_SPRETEiJ_G0029857	Apobec1	99	65.351	Mus_spretus
ENSCHIG00000011898	APOBEC1	96	72.727	ENSMPUG00000017532	APOBEC1	98	72.727	Mustela_putorius_furo
ENSCHIG00000011898	APOBEC1	93	69.196	ENSNGAG00000022607	Apobec1	98	69.196	Nannospalax_galili
ENSCHIG00000011898	APOBEC1	96	73.160	ENSNLEG00000005342	APOBEC1	98	73.160	Nomascus_leucogenys
ENSCHIG00000011898	APOBEC1	96	59.307	ENSMEUG00000013406	APOBEC1	98	59.307	Notamacropus_eugenii
ENSCHIG00000011898	APOBEC1	75	59.444	ENSOPRG00000009508	-	99	59.444	Ochotona_princeps
ENSCHIG00000011898	APOBEC1	96	70.130	ENSOCUG00000025736	APOBEC1	87	70.130	Oryctolagus_cuniculus
ENSCHIG00000011898	APOBEC1	98	69.915	ENSOGAG00000026415	APOBEC1	100	69.915	Otolemur_garnettii
ENSCHIG00000011898	APOBEC1	97	98.291	ENSOARG00000002072	APOBEC1	98	98.291	Ovis_aries
ENSCHIG00000011898	APOBEC1	98	68.220	ENSPPAG00000027657	APOBEC1	100	68.220	Pan_paniscus
ENSCHIG00000011898	APOBEC1	96	74.892	ENSPPRG00000012182	APOBEC1	98	74.892	Panthera_pardus
ENSCHIG00000011898	APOBEC1	96	74.892	ENSPTIG00000020280	APOBEC1	98	74.892	Panthera_tigris_altaica
ENSCHIG00000011898	APOBEC1	96	74.026	ENSPTRG00000004614	APOBEC1	98	74.026	Pan_troglodytes
ENSCHIG00000011898	APOBEC1	96	74.892	ENSPANG00000021027	APOBEC1	98	74.892	Papio_anubis
ENSCHIG00000011898	APOBEC1	57	48.624	ENSPSIG00000012791	-	73	48.624	Pelodiscus_sinensis
ENSCHIG00000011898	APOBEC1	80	44.041	ENSPSIG00000012568	-	81	44.041	Pelodiscus_sinensis
ENSCHIG00000011898	APOBEC1	95	64.629	ENSPEMG00000023841	Apobec1	100	64.629	Peromyscus_maniculatus_bairdii
ENSCHIG00000011898	APOBEC1	96	61.472	ENSPCIG00000023973	APOBEC1	98	61.472	Phascolarctos_cinereus
ENSCHIG00000011898	APOBEC1	96	72.294	ENSPPYG00000004228	APOBEC1	93	72.294	Pongo_abelii
ENSCHIG00000011898	APOBEC1	77	70.968	ENSPCAG00000008733	APOBEC1	99	70.968	Procavia_capensis
ENSCHIG00000011898	APOBEC1	99	68.996	ENSPCOG00000013957	APOBEC1	98	72.523	Propithecus_coquereli
ENSCHIG00000011898	APOBEC1	96	58.874	ENSPVAG00000010709	APOBEC1	98	58.874	Pteropus_vampyrus
ENSCHIG00000011898	APOBEC1	95	64.912	ENSRNOG00000015411	Apobec1	99	64.912	Rattus_norvegicus
ENSCHIG00000011898	APOBEC1	96	74.026	ENSRBIG00000031161	APOBEC1	98	74.026	Rhinopithecus_bieti
ENSCHIG00000011898	APOBEC1	96	74.026	ENSRROG00000033576	APOBEC1	99	75.263	Rhinopithecus_roxellana
ENSCHIG00000011898	APOBEC1	77	69.832	ENSSBOG00000030587	APOBEC1	97	75.000	Saimiri_boliviensis_boliviensis
ENSCHIG00000011898	APOBEC1	94	61.674	ENSSHAG00000008925	APOBEC1	99	61.674	Sarcophilus_harrisii
ENSCHIG00000011898	APOBEC1	55	66.667	ENSSARG00000011972	-	100	66.667	Sorex_araneus
ENSCHIG00000011898	APOBEC1	71	66.082	ENSSARG00000000032	-	99	66.082	Sorex_araneus
ENSCHIG00000011898	APOBEC1	91	39.556	ENSSPUG00000009044	-	86	39.556	Sphenodon_punctatus
ENSCHIG00000011898	APOBEC1	96	77.489	ENSSSCG00000000668	APOBEC1	98	77.489	Sus_scrofa
ENSCHIG00000011898	APOBEC1	62	45.833	ENSTGUG00000013118	-	99	48.611	Taeniopygia_guttata
ENSCHIG00000011898	APOBEC1	95	65.158	ENSTBEG00000010043	APOBEC1	94	67.873	Tupaia_belangeri
ENSCHIG00000011898	APOBEC1	75	77.348	ENSTTRG00000014015	APOBEC1	97	77.348	Tursiops_truncatus
ENSCHIG00000011898	APOBEC1	98	74.262	ENSUAMG00000011636	APOBEC1	97	74.262	Ursus_americanus
ENSCHIG00000011898	APOBEC1	98	74.262	ENSUMAG00000016552	APOBEC1	97	74.262	Ursus_maritimus
ENSCHIG00000011898	APOBEC1	96	73.593	ENSVPAG00000001343	APOBEC1	98	73.593	Vicugna_pacos
ENSCHIG00000011898	APOBEC1	96	73.593	ENSVVUG00000010522	APOBEC1	98	73.593	Vulpes_vulpes